Array 1 14975-17062 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS990394.1 Helicobacter cinaedi CCUG 18818 = ATCC BAA-847 strain CCUG 18818 supercont2.4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 14975 36 100.0 30 .................................... TTAAAACTTTATTTGAAATATAGAATTACT 15041 36 100.0 30 .................................... ATTAGAAAAAGAAAACTACGAACGACTTTT 15107 36 100.0 30 .................................... GCTTAGCATACTTGCTCCAATCACCGCTCC 15173 36 100.0 30 .................................... ATAAGAAACAGCATTCCATTACACTTTAGA 15239 36 100.0 31 .................................... TAAAAATTTCAAAAAGGAGAATCTAAATTAT 15306 36 100.0 31 .................................... TAAAAATTTCAAAAAGGAGAATCTAAATTAT 15373 36 100.0 30 .................................... GATGAAGTTATCGACAAAAGCAAATCAAAA 15439 36 100.0 30 .................................... AGGAAGCGGTATATATCCCCACGAAATGTA 15505 36 100.0 30 .................................... GATACACTCACACATTCCACACCTAGAATC 15571 36 100.0 30 .................................... CTTCCAAGAAAATGAAAAGATTCTCCAATT 15637 36 100.0 30 .................................... AGCGACATCGGGGATTGCACCGAGTCCAAG 15703 36 100.0 31 .................................... TTTAGACATCCGCGACCTCCGCCTTGCTTCT 15770 36 100.0 30 .................................... ATGCAAAACAACATTAACTCTTTGATCAGA 15836 36 100.0 30 .................................... GAGGTTCTTTTTGCAAAAAAACAAATCGGC 15902 36 100.0 30 .................................... AAGCGCAGGCATTGTATCTGCCCTTAATTT 15968 36 100.0 30 .................................... GCTAGTGATTGTTTGACTCGCAGGACTCCC 16034 36 100.0 30 .................................... ACGTACGACTACGACTTGGACATTGACAAT 16100 36 100.0 31 .................................... GTCCCACCTGTATTTTTTAGTAGTAACATAG 16167 36 100.0 30 .................................... ACAAAGTTACTATAATGCTTATCAAAAGGA 16233 36 100.0 30 .................................... AAATCATTCTGATGGCACATTAAAGCTTAG 16299 36 100.0 31 .................................... CAAAATCCCCGCTGATGTCCTCCCATATCTC 16366 36 100.0 30 .................................... ATAGGAGCAAGAGACTCAAATAAATCCTCT 16432 36 100.0 30 .................................... CTATTTGAGAATTCTACTCGTAATGATTTT 16498 36 100.0 30 .................................... ATATGTCTCATCATTTATAAATGTGCGTAT 16564 36 100.0 30 .................................... ATGACACAAATAATTATAATAGCGGGATTA 16630 36 100.0 31 .................................... CACAACATCGGGGATAGCACCAAGTCCAAAA 16697 36 100.0 30 .................................... GCCGAAATCGCTCATCTTATTGGAATTTGT 16763 36 100.0 30 .................................... CAAGAGCTTTATGCTACAAAAGACAACAAA 16829 36 100.0 30 .................................... TATCGCCGCCGAAGGCGTCGTTTTTCTTTT 16895 36 100.0 30 .................................... CATCATTGGTTCGTCCCTTATCGTCTTTTA 16961 36 100.0 30 .................................... CCACCGACACTTCCATTACCGGCTTTTCTA 17027 36 97.2 0 ...................................T | ========== ====== ====== ====== ==================================== =============================== ================== 32 36 99.9 30 ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Left flank : CTTTTTTATGATGCAATTTAGCGTGTATATGAAAATATGCAAAGGGTTAAGCTCGGCAAAAAGCTCTCTAAATGTTGTAAAAAAGGTGCTTCCACCTTATGGTAATGTCCGCGCACTTATCATCACAGAAAGACAATTCGACAATATAGAAATATTATTAGGAAACCCATCATTTAATGAGAATGTTAATGAAGATAAAAATCTTGTGCTATTTGACTTTGACGAAAATGCGGGTGATTACCGCTATGGTATGGAGTATCAAAAACAAGAAGAATTGAATACAACTACTACACAACCAAAACAAAAAATCAAAAATAGGCAACCAAGCCTATTTGAATTCTAGGGTTTTGATAGGGATATGATTTACCCTGCGGAAGACCCCTTACTCCCTTATTTTAGTCCCTTCTTAAACTTCTATGTCGCGAATTATAAAGGATTTCAGGTAATTTCCAGCTTAAAATCCTTTGAAATCCCTATCTATAGGCACCAACAGAGAGCCT # Right flank : TTAGTGAGATTGAAGCCAATTGGATACGAATAATGGCAGAGCTAGAGACACAAGATGGCGATAGTAACACTTCATAGAGTGTGGTTGAGTCAAAGCAGAATTTTAATGCCCTAAATGACTTTAAAAGTTATGCTGATGAAAATCAAAAGCAAACAACAAATGGCTTTTCATTTGGCTCTGCGTTTTCTAAATTGAAAGAAAAGGGCATTGAAGCAAAAGAAGCCATTGAAAAAAAGCAGAATGCTAGATAAGGTTAAAGAAAAAACAAGTGAGCTGACAAACAAAGGACTTGAAAAAGGCAAAGGATTGATTGAATCTCAAAAACAAAAAGGGGCTAACAATGAGCGAGATTAAGAATAAAACATTTGAAGATAAGTACAATTTGTTGGGCAATACACTGCTAAAAGTTAATGATATTTTATCTAGTGATTTTAGGAGAGAGCTAGAATCTTTGAGTCCTTCTTCTATGAGTATGGATAAAAAACTTTTATTGTTTTCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTAGCATATAGAAGTTTAAGAAGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //