Array 1 2030-136 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZMW01000011.1 Helicobacter cetorum isolate 138563_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 2029 36 100.0 41 .................................... TCATAGTCATTTCTTACTCCTTTAAATAAATTTCTTAGAGT 1952 36 100.0 39 .................................... TCTAATCCCATAGTTCTTTTAAAGATACTATCTATATCT 1877 36 100.0 40 .................................... TTGAAGCTAGGAAGTTACTTGAGCAAGGAGTCTATGATAA 1801 36 100.0 45 .................................... TTAAAAGATAGAGCTAATAGTATAGATACTCATAAGGCTATTTAT 1720 36 100.0 44 .................................... TTTAAAAAAGAGTTTTTAGAAATGGCTAATAAGAAACTTAAAAC 1640 36 100.0 38 .................................... TAGATTCTTCTAATATCTTTTTCTCATACGCTTGAATT 1566 36 100.0 45 .................................... TTTCTTCTCCTTTTTCGTCATTTATGACGATGTCCTCGTGGCCGG 1485 36 100.0 46 .................................... TCTTGACTGAAAGTAAGAATATCAGAATTCTGAAAGATGAATTTTC 1403 36 100.0 39 .................................... TCTTTTTCATAGATACCACCTCCATGTTCATGCATATCG 1328 36 100.0 45 .................................... TCCCTATCACTCAATACCCATCTCATTTTAACTCCTTTAATTGAG 1247 36 100.0 42 .................................... TCTGGTGTAATTATGATAATGCTAACCAATCAGACTTTGAAT 1169 36 100.0 42 .................................... TACACAATTGCAAATTTTGCCTTCAAAGTTTGCCGATACGAT 1091 36 100.0 40 .................................... TGTTCAAATGGTTGGTCTCCTTGGACTCATTTAACTGGTA 1015 36 100.0 42 .................................... TTGATTATGACTAAAGAGATTCCTTATTTACTTTCTATCGTA 937 36 100.0 43 .................................... CCTCTACGCCTTAGAACGCTATTCAATTTAAAGGCTTTCTTAG 858 36 100.0 42 .................................... CCTAAATCAAGCCCTATCGCTTGTTTAAGAGTGTTTAAGCAT 780 36 100.0 43 .................................... CACTTTCATACCAGAAAATACTCAAATACTAGTAGGAAACTAT 701 36 100.0 39 .................................... CTTAATGAACTGGCATTTTGGATCACCGCCTAGAGTATC 626 36 100.0 40 .................................... CAAAGATTAATGAGGATTTAGCTGGAAGAGTTTGGAGTGA 550 36 100.0 43 .................................... TTAGAAATTGGTTTACAATGTGGCAATTACAATAATGTTGTCC 471 36 100.0 41 .................................... TACTTTTTAGGAGTTTTAATACGGTTTATTATATAGCCCAC 394 36 100.0 38 .................................... TGCCCAGTAGAAAAGATATCTTCCCATACGAACGGTAT 320 36 100.0 39 .................................... TTAACTTTATCAGTTAGTTTCTCTAAAACCATACTAGTA 245 36 100.0 38 .................................... CAAAGATTAGAAAAGTCTATCATAGATTCAGAGATTGA 171 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================== ================== 25 36 100.0 41 ATTTATTACAGATTGACCCGTTCAAGGGGATTGAAA # Left flank : GCTTTGAGATTGGCGAAAAACGAGGTATTTTTAAACCCTATGATGATTTCATTTAAACACTTAATGATTGCCAAAATGATTTGCAAAATGATAAAGGGTTTTTGCGAACTTTTTAAGTTTTATTTGCAAGCTTGTGGTGTAAAATAAGAGCATTTTAACCTAAAGTATTATATTTTATGATTTAGAATGATAGGCTTTTGCGAACTTTTAGTTTTGATTAAGTTTTTAAAGGCGCTCTTTAGGGGTTTATGAACTTTAAAAAAGGCTTAAATTTCTCAAATCATTGCAAAATAAGCTTTTTAATGCCTTTAAGCTTCGCATAAAGAGGCTTGAAACTTTCGTATTTTAGGGGGTCTTTGAAAGTTTGTTGTTGATTAATTAGCAAAACTTTTATCTTAAATAGGGGGATTTGCGAACTTTTTCTAAAAAGCTCGTATTTTAGGAGGATTTAAGGGATTTTTGAATAAAATCAAAAGTCTTTAAACTCTGTGATAAAGGCT # Right flank : ACATAATATCCGCTGTCTCTTATCCACATCTCCGAGCCCACGTGACTAAGGCGAATTTCGTCTGCCGTCTTCTGCTTGCAATAACAAAGAAGTCAGCAGTCTTCTTCTAGGACTTATCATCATGTGCCATTACACA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTATTACAGATTGACCCGTTCAAGGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 1 14167-13657 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZMW01000037.1 Helicobacter cetorum isolate 138563_8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 14166 36 100.0 46 .................................... AGTTCAATGGTTGGTCGGTATCACCAAGTCTTGCAATCTTATTCAA 14084 36 100.0 46 .................................... TCAAGGTCTAATGCCACGCATTGTTTCAAACTTTTAAGACAGCACT 14002 36 100.0 40 .................................... CATTATCATTTGCTACATTGTCAGTAACCCACTGATTTCC 13926 36 100.0 42 .................................... TCATATTCCTTAAGATTTGAGCATTCTCAGGGTTCATATAAA 13848 36 100.0 42 .................................... ATAAACTAGTAGAACTGATTTTAAGATTTTGCTCTTCTACCA 13770 36 100.0 42 .................................... TTGGTACTGAAACTCACCCCGTGATAGCTGAGGCTTTAGACA 13692 36 97.2 0 .................G.................. | ========== ====== ====== ====== ==================================== ============================================== ================== 7 36 99.6 43 TTTATTACAGATTGACCCGTTCAAGGGGATTGAAAC # Left flank : TTCAAGGGGATTGAAACTTTATTGTTATCTACTGAACCAACCACATGCTCAGTAGATAT # Right flank : ATGAAATATTTAAGCAATTTTTAAGGAAAATTACATTTTAATTACGGCTAAAGATTTTTTTGTGTTGATGAGGCTAGGATTTATATTCATTAGTATAATCAACTATGCATAATGTTAGATAAAGCCTTACTTATAGTTGGTTTAGTTGTTAAATCAACTAGATAAAAATGATTATAGAATATTGTAATATAGTAGGAGTTGTATGGCTTCTATTTACTAATTTTATCTTTTATTACTAAGGAGATCCTATGGGAATTTCGGGAAGATTTGGTTAGTAGTTCTATTATTGAACTTATTTGGAAATGGTTTAATGGCTGATGACTTTAGTATTGATGTGAATACTAATACTATTGTTTTAGAGATTATAAAAGATTTTCATGAAGATGGTCTTTATGATAAAATCGCTAATAAGTTACTTAGCAGGTTGGCATTAAATATTGATGAATATGAGAGCACTTTGGATTTCAATATTTATAGCAAAGGAAAAGTTGATGTTGACT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTATTACAGATTGACCCGTTCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA //