Array 1 41534-43021 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRYQ01000012.1 Holdemanella biformis strain AF15-20 AF15-20.Scaf12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 41534 36 100.0 30 .................................... TTTTAGCCAATTTAAACACCCCCTTTTAAG 41600 36 100.0 30 .................................... GCGGTCGTGGAATTGGAAAAACTTACGGGT 41666 36 100.0 30 .................................... GGTAACTTTGCTTATGATACAAATGATTTT 41732 36 100.0 30 .................................... ACTCTTGGTGGATTCCTTGCACGTTGTCTT 41798 36 100.0 30 .................................... ATATATCCAGTATCTTTATCTCTTACATAA 41864 36 97.2 30 .........T.......................... CCACAAGTTATTGAGTTAGCACAAACTACT 41930 36 100.0 30 .................................... AAAATCAAAAATTTGTTAACGAGCAATTAA 41996 36 100.0 31 .................................... ATTTAAACTTAACATTTGCAAATACGTGTAA 42063 36 100.0 30 .................................... TATAAAATTCATAGAAGATGATAATTCTCT 42129 36 100.0 30 .................................... CGAAATGAGACGACCGCGATGCGGAACTGA 42195 36 100.0 30 .................................... AGCATATGTGATAGCCTCACCTAATGCGTA 42261 36 100.0 30 .................................... TTATAATCATTTACGGAAGAAAAAAAGACA 42327 36 100.0 30 .................................... TGAATGTGGTACTAAATGCATAGACGGAAA 42393 36 100.0 30 .................................... AAAGTTTAGAGGAAAATACTAAGACGAAAA 42459 36 100.0 30 .................................... CTTTAGACAAGTTTAGTCGGTTTTTTGGGA 42525 36 100.0 30 .................................... TTAAGTCTAACAAATTACGTGACGGATTGT 42591 36 100.0 30 .................................... GTAACTTTGCTTATGATACAAACGACTTTA 42657 36 100.0 31 .................................... AAAAGCGTTATTAAACAATGAATTATGTAAG 42724 36 100.0 30 .................................... GGCGCAAAGCAAACCCAGCACTAGGAAGTA 42790 36 100.0 30 .................................... ACAATGCACACTCAGTGCATACACGCAACC 42856 35 97.2 30 .........................-.......... TTTATTGTTAATCATTATTCTTTACACCAC 42921 36 100.0 30 .................................... ATGATATCATCAGCTTCTTTTACCATTTCA 42987 35 94.4 0 ................................-..T | ========== ====== ====== ====== ==================================== =============================== ================== 23 36 99.5 30 GTTTTGTTACCATAAAGATTTTTGCTAGAACAGAAC # Left flank : AAACAATTGATAAAAATGTTATCACCATATTACGAAGACGAATTACAAAAAGATGAATTTGATTTATCAAGAGATGAATTGATTTTGTTTCAATTAGATTTGATAGAATACATTTCCAATCATAATTCAAAATATGATAATATCTTTGTCTTTGGCAAACTAGATAATTTAAGTGATAAAATTCTTCAGAAAATCAATAAAATTGAGAATGTTAAATTGATCATATTTACAAATTGTTATAACGATTTAATGGATGTACAAAATACATCTTTATTGCAAGATAAAATAATAGATTTTGCAGACATGGAACAAATTTATTACGACCTATCGCAAAAATCACTTCAAACATATACGTTACAGGAGGTAGAACAAATGACAATTAATTATTTACAGCAAATATACACTCATAAAACACATGATATTTATCAAGAACTAGATCATTTTTCAATTAAATAATTAGTATTCTATTACATTCAAAAATGTGCTACCATATTTTTGAG # Right flank : TTTAAAATATAAAAACGGGAGTGACACCCCGCCAGAAAGGGCAGAGGGGGGACTCCCACCTACATTTTATTGTGTAAATGTTAATTGTCCAATGAAGAATATAAATATTTTATAATACAATACAAATAAATTTAGTCCATTTTGTTACTGTATATTTTTGCTAGAATATCGTTTATTTCTCTTGTTTGACATTAACTACCACATACTCACATATACCCTCTGTTCTTGTTGGAAAACCCCAACCAACAAGGCCTGAGCTAATGATCTTTGTATAGTGCATGAATGTTTCTTTTCCGTAATTACCCGCAAAATCTGGTTGTAAATGGTAAGAGTAAGAGAGTGGAAACATTTGTCCGTTATGGGTGTGTCCGCTGAGTTGAAGGTCAACGTTGTTTTTAATGTTTTCTTTTGTTCCTTGTGGTTGATGGTCTAAGATGATGTTGTAGGTTTTATTTGTTAGATGGCAGTCTTTTGTTTTCTTTCGGTTTTTGTTTGTGTAG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGTTACCATAAAGATTTTTGCTAGAACAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 27320-26745 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRYQ01000006.1 Holdemanella biformis strain AF15-20 AF15-20.Scaf6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================== ================== 27319 31 96.8 38 ............................T.. CCCTTTCTTTCTACAATTTTATGCAAACTGTCTATTCT 27250 31 96.8 40 ............................T.. CTATGATGTAGGAGTATCAAATAATTCAACAAGTATCAAT 27179 31 100.0 35 ............................... TTGAATTCGTCAACGCTTGCCATCACACAGTCGTA 27113 31 100.0 36 ............................... AGGCTAAAACTTTACCACATTTTTTACATCGAACTT 27046 31 96.8 35 ..A............................ TCGATACGATTTTTATACTTGTTTTTCACTTTTTC 26980 31 96.8 36 ....C.......................... TAACCTACCTCCCGATTTTTGTTCTAACTGCTATGA 26913 31 100.0 36 ............................... ACAATGTTCTTGATGAACTCTATGGTTGCCATTACA 26846 31 100.0 40 ............................... TAGCTACCTTTTAACTTCTGGTCTGCCTTAGCTCCTTCCA 26775 31 87.1 0 .........................G.TT.G | ========== ====== ====== ====== =============================== ======================================== ================== 9 31 97.1 37 GGGAAATATGATACTTATAAAGGATCGACAC # Left flank : CATAATAACATGGGCTTTAGGAAATGGAGGATTAGATTTTTCTACAGTATTCTTTATGTTTCCAGGACATATGATGATATGTTCAATGATTACTGAAATGATATTTACTGTTACGCAGATCTCTTCAGTTATTCGAGAAATTATAATAGAGAAGAATAGAAAAAAGGCTATTCAGAAAAGGAAAGAAGAGAAAATTGCAGATGAAAGAAATATGTGTTCAGATGATATTAAGTATATAGAAAGCATATTAGAAGATTGTGGTTTCTTTGATGCGGGTTCAACATCTAAATAGAACTCTGACATTAAGAATAAAAAAATACTGTATATGGTTATAAAAACGAAAATCAAAAAGTATGAATTTTCGACCATCACCTTAATTTGAGCTAATTTAAGCACTGAAAATAGTCAAAAAACAGGAGGTGGTCGAAAAATATATGCCAAAATCGATCGTTTTTCAACATTTTCAGCAATTAAAGTCCAAAATGTGCTATATTTAGTAA # Right flank : ATAGTGGATTGAAATTTATTTAAAAAGTCTGTTTATTTAAACAGGCTTTTTAACTTTTGTTACACTTTTATAGGATTATTATTAGATTTATTGGGAATGGCTATAAATTATTTAATGAATAGAATATAATTTGGTTATATTTGATTATAAATAAAGGAGTTAGACATGAATGTAGATAATTTGAAAGTCTTTGAGGACTTTATTAAACTTGAATCCGTAATAAAAGAATTAGAAGAATTTATTGTTTATGTTAAAAACGATTTAGGCGATGACATGAAAAAGGTCTATCCAACTATGTTGGTGGTCGCAAAGGATGAAGAGCAGGCAGCGTTGTTTGCGCAAGGGGTCGCAAAAATTTTAAAAGAACAGAAAATAATTTCTACTTATTTAAATCGTCCATCATTCTTATGGGAGAGTGCAATTGGAAAAGAATTTGACTGTGTGCTTGTAGATGATTTTGATGATCGTCCTGCAACAAAGGTTGAATTGGAAAGAGTTGA # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGAAATATGATACTTATAAAGGATCGACAC # Alternate repeat : GGGAAATATGATACTTATAAAGGATCGATAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 30637-30126 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRYQ01000006.1 Holdemanella biformis strain AF15-20 AF15-20.Scaf6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ========================================== ================== 30636 31 100.0 42 ............................... TTGTCAAGTCATCTAACTTGGCCTGAATCTGCTCTGGAGTTT 30563 31 100.0 37 ............................... CCCATAACTAGGGAACATTTGTCCACCAACATACCAA 30495 31 100.0 35 ............................... TAAAGTGTTTAGATATGAATTCTTTAAGCTATCTA 30429 31 100.0 38 ............................... TCTAATGCCTTCTTTTCGATATAATTTGTTTCCATGTT 30360 31 100.0 36 ............................... TCTAAACTGACTTCGTTTGCTTTCCATCCTAAATTT 30293 31 96.8 38 ............C.................. ATTTCATCTGCTGTTTTGATTTCATTCAAGTTGATTTC 30224 31 96.8 37 .........................T..... TTTTTTCGAATAGTGGTTTTTACGACAGGTCTTGAAG 30156 31 96.8 0 .............................G. | ========== ====== ====== ====== =============================== ========================================== ================== 8 31 98.8 38 GGGAAATATGATACTTATAAAGGATCGACAC # Left flank : GAATGTGCATTTCCATTTTTGTTTCGAACAAACCCAAATTCAACCGCATCCTGGTCCAACTTCTTACACATCTCTTCATCTACATATATATTTGTGGTGTCATTTCCACTATAGTAATTTTGTTGATTCTGTTTTTCCTCTACATATTTATCATTCAATTCACTATCAACAATATCTTTATATTGAAACCGTTCAAGTTTAATTTTACTAGAACAATAAGGACATTTTATTGTTGCCATATTAGGTACCTCCTTGTGATTACTTATATTTAAAGTGTAAACAATATTCTTATATAATTCAAACAAGAGTTTAAAATAATGATAGATGGTTATACATTTACAACCAGAATATGACTAAATTTTCGACCATCACCCAAATTCGAGCTGATTTAAGCATAAAAAATAGTCAAAAAACAGGAGGTGGTCGAAAAATATATGCCAAAATCAGCTATTTTTCAAAATTTTTAGCAATCAAAGTCCAAAATGTGCTATATTTAGTAA # Right flank : TAGTAACTGTTACCGGCCATTGGATTAACTATATTTGGAAACTATGCTACTTATAAGAAGTGATTTTTGGAGGTTTGATCTCCAATTTTTTATTATTGTTTTTACGTGAATTCGTTTTAATGATGAAATATATGCTGTTTTATGTGCAGAAGTATGTTGTGTTGTAATGATGTCAGTAAGAACATGGGTTTATAGATTTTTTTGTTAAATGAATAATTGTGATTGTAATTGAAAATGCTATCTAGATTGATTAGGTAGCATTTTTTATTTGTCTAAAATTCAGAATTTTTAATATCTTAGTTAATTCAATGAAATATCAAGACATATAAGGGTTGGAAATAGAAAAAAGAGGTGTGTTCATATAAAAAGTGTTCGTAAATAAACTTAAATAGTTGTTTAATACATTGAAGTACGATGTGAAAGGGTATCTTTGTTTAACGATATTGAACATCGTTGAAAACATGGATTCGATTTAATATATAAGAGGTTCAAGAAAGAGC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGAAATATGATACTTATAAAGGATCGACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 3 68871-68425 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRYQ01000006.1 Holdemanella biformis strain AF15-20 AF15-20.Scaf6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ========================================== ================== 68870 31 96.8 35 .........................T..... GTGAACATCTGGAGAACCTTTGACCATTTCTGTCA 68804 31 100.0 40 ............................... TCGCTGATCCACAGATTTGTTCCGTCAAAGGCTTCAACAA 68733 31 100.0 39 ............................... AAACGTTGTTATCTCTCTGGAAAAGGAGGATAACAAAAG 68663 31 96.8 37 ......................A........ TTTTGTCAAAATAAATTTTATTTTCATTTTTTCAATT 68595 31 100.0 42 ............................... TTTATTAAATTCTTTCATGTTCTACCTCCTCGCCACATGTAA 68522 31 100.0 36 ............................... AATCCATGATAATTAAGAATAGTCATGTTTTAACCT 68455 31 83.9 0 ................G........T..TTT | ========== ====== ====== ====== =============================== ========================================== ================== 7 31 96.8 38 GGGAAATATGATACTTATAAAGGATCGACAC # Left flank : TAGTTCAGACCCAGATAATCGTAGACCAACAAATTGGCAAGAACCAAAAGAGTCTTATGAAGACATTTATTATATGACTCAATTATTGATAAAACTTAGAAAAGAACATCCAGTATTAGCTAATGAAGGAAACATTGAATGGATCCATCATAATGAATTATTAATTATGAAACGAGCTAATGAAAATGAAACACTCTATATCGTAGTCAACACAAAAGAGTATACACTTAATACAATGTTGCCAATGCAAAATGAATTTATCAATATTATCAATAACGATACAATCTATACAAATATAGAAATACAAAGACTAGGCTTTATGATTTTAAAAACAATTCACGAATAATTAAACCTATATTTTTCGACCATCGACCTATTTTGACGGATTTTGAGCACCAAAAACACCACAAAATACTGAGGTGGTCGAAAAAAACAGGTCAAAATCAGCTGTTTTTCAATATTTTTATCAACTAAAGTCCAAAATGTGCTATATTTAGTAA # Right flank : ATTGAATACTAGAAATAGTATTCTTTTTTTATGTCTTGTTTTTGTTTTACTGGTTAATTTATTACTTTCCTTCGACATTTAATAGTAGTAAAGGAGTGATAAGTAATGGCTTATGTATTTCATAATCGAAATGAAAATAAAGATAAATATGATGGATTAGTAAAAGAGGCTCGTGGTATTCGTAATATGGGGATCTTGTTGACTTTGGGTTTGATTGTTTGTGTGATGATGGTTCCGTTTTCTGTAGTGTCTTGGTGTGTTGAGCTTAGTGTATTTAATGTATAAACATGGAAATGTGATGAATGAGGCTGGAATTTTGGCTAGTGGAGTAAGTGGTGAGAATAGGGTGTTTAATACGTTGCGTCAATTGCCAGATGAATATGTAGTGGCAACAAATGTTCCTGTTTCTTATGGTGAGAATCATTCGGAGGTAGATGCTTTAGTGATGAGTCCTTATGGAATGTATGTTGTGGAAGTGAAAAATCATAAGGGATTAATTG # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGAAATATGATACTTATAAAGGATCGACAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.80,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 4 79838-79997 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRYQ01000006.1 Holdemanella biformis strain AF15-20 AF15-20.Scaf6, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =========================================== ================== 79838 25 100.0 42 ......................... GTTCCCTCTTTTTAGAAGAAAGAATTGAGTCATTGAGAAATG 79905 25 100.0 43 ......................... TTCCCCCAGACCCAAACAATAGAAGTAACTATACTGCTCCTAT 79973 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= =========================================== ================== 3 25 100.0 43 GTGTCGATCCTTTATAAGTATCATA # Left flank : CTGGATCCCAGTCGCATTGATCATATCCCAAATAATATGTTACTTTGAAATATCTAGCACCTTTTGAAAATAAATAGTCTACCATAGCTCTGAAATTTTCTTCCGGACTTTTGGATTGACTTTGGGTATCCAACACATATCGAGCATGGACTGCTTTTTGCGTTGAATAAGCCTTTGTTTGAATTAACTGCATATTCTTGTCCTTTCTAGACACTTTCAAAAGAAGAGATGTCGGCTAATATTACTTTTACAATTAGCCTTATTTATATTTATTTGAAATTAATTCGACTTGTATATAGGTCTTCATTTTCAGAATAATTCAAATTTGAAAGAAATACATCCCGAACAGCACTCTGAATATTTTCTGCCAATTTGATTTTATCTTCTGTGCTTATATTAGTGTTTCCTACGTCGATATGAATATCTACCGGTATGTTAAGACGAGGCAGCTCCATAACCCTTTCCATAATTCCGCAAAAAATCGTAGATTCTGGATACTT # Right flank : ATTCCCCTTACTAAATATAGCACATTTTGGACTTTGATTGCGAAAAATGTTGAAAATCGGGTGGTTTTAGCTTATTTTTTCGACCACCTCGCTTTTTTTGGTATTTTTAGGGCTTAAAATCCTTCAAATTAGGTCGATGGTCGAAAATTTTAATGGTTTGGTTGAATTATTGGCTTGGTTTTAACACACAATTGATGATTGATTAAAGAAAACTTATATCTTATTTATTTCTCCTCCCTTCTTTTTTTGTGTAGGATTCCTACAAGTCCTAGACCTGCTACCATGCTTGTTAACATGGATCCCATTACATTTGTATCAACGCCTGTATGTACAGATTCTTTGTTAGTTGTAACTTCAGTTTCTTTGGTTGATTGTGAGTTCAAGTAGTCATTTAATGCTTGCATAGCCTTATTGTAGTTGGTATCGGCATCTGTTTTTGCTTTCTTGGCATCTAGATACAACTCGTATTTTGTTTGATAATTTGCCTTGGCAATTTCTAG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTCGATCCTTTATAAGTATCATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //