Array 1 724317-723990 **** Predicted by CRISPRDetect 2.4 *** >NC_010628.1 Nostoc punctiforme PCC 73102, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 724316 36 100.0 38 .................................... GGCCAAAGCCAAACCTTTACCTTTGAAGACACGCCGTT 724242 36 97.2 36 .C.................................. TATAAAGGTTTTGTTTTAGCAAGTCAAGTAATAAAA 724170 36 100.0 36 .................................... AAAGATTATAAAATCTCCTGTAAGTATTCCTGAATC 724098 36 91.7 37 ....C............A........A......... TGCCGAAAAATACGGTGCAGCAAAAGCGATTGAAGTT 724025 36 97.2 0 ..........................A......... | ========== ====== ====== ====== ==================================== ====================================== ================== 5 36 97.2 37 GTTTGAATCCCTATCAGGGATGAGGTGTTTTGCAAC # Left flank : CTCGACTCTTGGATATTCGTTATGAATCCACCATACTTTTACTCTATTAGCCTGTGCAGGTGCGCTACCTGAGATTGAATATCCTGCTTGAGTCATTAAGGTTTCAAAAGTATTTGAGTCGAGAACTGTACAATTAAAAGCTGCTAGCCCCTGTATTTGATGTCTGTTTAGGGTCATAGCTACCCTGGTAAGTCGTAAAAATTCTATATCCTGGTAATACTAACGCAATTCCAGTGTTACTGTGAATTTTACCGGGATATTTATAGGGAATATCATCTGGTATGTTCCCACCAAGGCGAAAACTAAAACCAAATAGCCATATATACAAACCAGGTAATAGTAAATCCATGCTATATGTAATAGCTCTCATTGCCTCATTTTCTTTGAAAGAAGAAAAATTTCTAGCTATAGCGAATTTTTTGGAGATATTTTTCAGGTTTGTGGTTTCTAACATAGGTCTTAATTTCAATCCCCAATAGGGATCTTAATAAGTTTCAAGC # Right flank : GGCTGACCTTTGAAAGCTTTGCTGTATTAGGATTTTAAGGTTTAGTTGCGCGGATGTGTACATAATAGCAAAGTTTTCAAGCTCTTGTAAGAGTGGAAAGCCTTTAAAATACTTATACCCCAAGGTGCGCGACAGTTAATCGAAATAGAGTTTTTGAGAGCATTTTTATTATCAGCCAAAAATTAGCGATCGCTCTGTAACAATGGGAACAGTACCTTTAAATGGTTAACTTATGCTTGTGTTTCTGCTGCACTATTTGTTTCTTAAGACTTAACTTTGTTTGAGCTAACCGCAAGTGAGTTTAAATGTGAGGAAAATCAAACTACCGACTTTGATATTAATTAGTTTGGCAATGGTTTTGTGGTTGAATTTGCGTTCTTCAACACAGTCAATATCAACTGTTGTATCTTCACCACCAAAAAGTATCCGCTACTTCGAGCGCACATTACCCCAAAGCATCGCTCACGTTCTGTTTATTCCAGTTAATAGCAAATTTTTGG # Questionable array : NO Score: 2.84 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAATCCCTATCAGGGATGAGGTGTTTTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 1228880-1229486 **** Predicted by CRISPRDetect 2.4 *** >NC_010628.1 Nostoc punctiforme PCC 73102, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 1228880 37 100.0 35 ..................................... AATCTTTTTTGCTGATTATATCAAATCATTAGATG 1228952 37 100.0 34 ..................................... TTTACATGTACCCTAGTTGATACACCGTCCACAT 1229023 37 100.0 33 ..................................... CTTACCGCACTTGATTGGGTATACAAAGCCAAT 1229093 37 100.0 33 ..................................... TCTATTATGTATACTTCTGCCCGGACTACGAGA 1229163 37 100.0 34 ..................................... CTAGGGCTTTTTAGTGACTTTCTAAATCTAAAAG 1229234 37 100.0 34 ..................................... ATATTGGGAACCCATACACCATCTGTCTTAGGTT 1229305 37 100.0 36 ..................................... TACTGCCGCCACTGCCTCAGAAACAATTTTAGGATT 1229378 37 100.0 35 ..................................... TCCGTATTTTTTCCCGATATGGCCCCTGGTTGCAA 1229450 37 97.3 0 ............................A........ | ========== ====== ====== ====== ===================================== ==================================== ================== 9 37 99.7 34 ATTGCAATTTATCAAAATCCCTATTAGGGATTGAAAC # Left flank : CTCTACTGTTCATAGAATTAACAGACATGATACGTAATTCTTCGCTGGAAAGGGGAACGAAAGAGGTTTTGATTAAAACAGCTTTTAGAGAGTTTGCTTGTGCAATAACAGACTTTGAAGACGTTGGCAAATAAAGTCAATCATGAGGGTGCTGGTATTCTGTAGGTGTAGCCCACCCCGGCAACACTCTAACTAATCAAGTAGGGTATTTATAAATAAGCAGCTTTCCAATCAGATTAGTTTTTTTGTTAAATGCGCGGATGGGTAGGTATTGGGGAGGGGGTAACTAGAAAAATGGCTGAACTGTGCTATGTGCAAGAACTGGGGAGCGATGCCTGCGGTGGGCTACGCCTACGCATTTCAATCCATCCGCGCACCTTATGGAGAGTAGTTTTCAGCCATTTGCCTCTAGCCAATTCACAATTCATCGTGTTATCATTTCAGCATTCGCGTAACCGAACCTTGAAAACCAAATAGGGCAAAGCTTTCATAAGCCAGCG # Right flank : CGAATGAGAAAAGGGTGGGCAAGTAGCCCACCCTAAACCATTATTTAATTAGTACTACTTGACTGGTGCTTCAGTAGCAGTCTTACCAACAAGCATTGCGGTATTTTCATCGCTTTCGAGAATACCGAATTCAATCAACAACTCTTCTAACTCTTCCATCTCAATGGGGGTGGGAACAGCTAGCTTGTCGTTGTCGATGATCTTTTTAGCCAGTATCCGATATTCGTTACTTTGATTGCTATCTGGTGCGTACTCGTTAACAGTCATCCGACGCAATTCTGCGTGTTGTACAATGTTGTCACGAGGTACGTAGTGAATCATTTGGGTGTTCAAACGTTTTGCCAAGGTTTCGATTAAGTCGATTTCTCGGTCAACGTTACGGCTGTTACAAATCAAACCACCCAAGCGCACGCCGCCAGTGTGAGCATATTTGAGAACACCACGAGCGATGTTGTTAGCTGCATACATCGCCATCATTTCACCAGAGGTAACGATGTAGA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTATCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 3 1605869-1601611 **** Predicted by CRISPRDetect 2.4 *** >NC_010628.1 Nostoc punctiforme PCC 73102, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 1605868 37 100.0 34 ..................................... GGATATGGCGATCGCTATTCATACAATTGATAGA 1605797 37 100.0 34 ..................................... GCAATCAGAATCATGAAAATAGCAGAAGCCTGTG 1605726 37 100.0 34 ..................................... TCTGGTGAGGATATCAAAATAGCCTTCAATATTA 1605655 37 100.0 35 ..................................... TAATGTCGCTATGAACCCTAAAACTGCTTTAGATA 1605583 37 100.0 36 ..................................... TCTTTTAGGATGTCGATGACCCTGCTGGCCGCCAAC 1605510 37 100.0 34 ..................................... TTTCGGAATACTCGCCAGCACTCCATACTTTATA 1605439 37 100.0 36 ..................................... ATGAATAATCATTTTGGAATGCCTCAATGCCGCAAT 1605366 37 100.0 38 ..................................... CTTTAACTCTTTATCTTTAGCAAGTCTTGACATGTAAA 1605291 37 100.0 34 ..................................... TTAGTCATAAAGTGCAATCTTCGGTTGCAATTAC 1605220 37 100.0 35 ..................................... CTAGGAAACTTCCCCGTAGTAGAATCTTTTTTCGC 1605148 37 100.0 33 ..................................... GCTTGGCGGGAAAGTAGCAAGCGATCGCAAGTG 1605078 37 100.0 41 ..................................... AGATGCATGGTGAATATGTTGAGGTGGGAGGATACACTAAG 1605000 37 100.0 36 ..................................... GTATGCAGCTGCGGTAAAGCACACACTTGCAAATAA 1604927 37 100.0 35 ..................................... CTAACGAGGGGGCGTGGCAGAGGCAGTTGAACGGT 1604855 37 100.0 36 ..................................... TGATGGGCGATCGGTCAGAATGACAGTTGATGCCCG 1604782 37 100.0 38 ..................................... ATCCATCTTTTTCCCAATCCAGTCATTGGGAAGGGCAG 1604707 37 100.0 36 ..................................... TTGGATAAATTGGGGCAGTCCTGGGGTGTAACCCTT 1604634 37 100.0 34 ..................................... AAGAAACTAAAACTTAAAGATATTGAGGAGGAGA 1604563 37 100.0 36 ..................................... TCCTTAGCTCACAGCGATCGCCTGCAAGCTAAATTT 1604490 37 100.0 36 ..................................... GAGTATGACAATGATGCTGGTGATACTATTAAAAAA 1604417 37 100.0 40 ..................................... GAGGGCGATCGCCCTGCACCCTTTTGATTAGCTCTATTAA 1604340 37 100.0 35 ..................................... CAATACGTCCCCAGACGGAATACTCCGAGGATTCT 1604268 37 100.0 37 ..................................... AAAATTCCACGATCGCAGGAAGGAAATCCCCTGGGTG 1604194 37 100.0 34 ..................................... TTGAGGGTATAGGGTTTTGTCAGGGCGGATTAAA 1604123 37 100.0 37 ..................................... TTTGATAGCAACTAGCTCACTCCCCTCTGCACCGGGG 1604049 37 100.0 36 ..................................... TTTATAGCTATTGTTGCTACTTGGATGGTCGTTAAT 1603976 37 100.0 34 ..................................... ACATCGCAGTGAACGACAAGGTGAAGATGTAAAG 1603905 37 100.0 36 ..................................... AGGTGTTTTAGACGCTCAGTCTAACTTTAGTCTCCG 1603832 37 100.0 33 ..................................... AAGAATTGCCTCAGCACAAAAACAAAATGTAAT 1603762 37 100.0 33 ..................................... AGGTAAATGACGGGGACAGCAGCAAAAATCATC 1603692 37 100.0 35 ..................................... GTGTCGGTAGTGAAGGTGAAACGGATCGCTATAAG 1603620 37 100.0 33 ..................................... AACTGATAAGCTTCCTCGCGGGGCTTTCGAGTT 1603550 37 100.0 35 ..................................... ACAGTAGCCTGACGAACAGCAGCTTGAACTGACAA 1603478 37 100.0 35 ..................................... ATTCAACCATACCACACAGTGGGGGGAGGGGTCAA 1603406 37 100.0 37 ..................................... AGACGTGACAGACTTGATTGTACAAAGTGACATTCAA 1603332 37 100.0 33 ..................................... ATGGCAAAGCTTCAGTTTTCTGAGTTTGAAATG 1603262 37 100.0 35 ..................................... ATCTCTTGGGCCTATCTACCTTTGGCACATCAGTG 1603190 37 100.0 37 ..................................... TGAACATAACGGGGAAATGCTCGAACCGCGATCGCGT 1603116 37 100.0 36 ..................................... CTCACTACCAGAAGTGTAGCGAAGCCAATACGCAGG 1603043 37 100.0 37 ..................................... TTACATCAATACCCGCATCTTTTCTTTGAAATAAATA 1602969 37 100.0 37 ..................................... TTTTAGCGGTATGCTGACTCTTGCTGATGTTGACCTT 1602895 37 100.0 36 ..................................... TTAGCTGCGATCGCTAACAAGCGAATGAAACGCGGA 1602822 37 100.0 35 ..................................... CCAGTGCTTAAATGCTTCGCGGTGCAATTATCCAA 1602750 37 100.0 41 ..................................... CTGGCTTTGAACAACTCAACGAAGCAGAACGCGCTTGGATG 1602672 37 100.0 41 ..................................... AAGGACAAACCAATTGTTCGATTATCTGAAGACCTGCGGAC 1602594 37 100.0 36 ..................................... AATCACTAGTTGACGTGCTTTTTACAAAAAACCAAT 1602521 37 100.0 35 ..................................... AAATTCTTAGGCTCAGGTAAAGATGGATGTAATTG 1602449 37 100.0 34 ..................................... TTACTAGAAGGCATCCAGCGATCGACCACTACGA 1602378 37 100.0 31 ..................................... ACTCTTTACAGCCCAGATGGGCGGCGTTCTC 1602310 37 100.0 37 ..................................... ATATTCTTGATTTGCCCTAGCTGTGGGCTAAGAAGAT 1602236 37 100.0 43 ..................................... GGATTTTATGAAGGGAACTAGCCCTGAAGCCTCACCATATAAG 1602156 37 100.0 38 ..................................... CCAAGGCTACCTTTGTGCCCCTGAGTTTTACCAAGCCT 1602081 37 100.0 36 ..................................... ACTGGAACTTCATCAAATCAGACGCGATCGCTCCTT 1602008 37 100.0 39 ..................................... TTATTCTGCTGAATAGGACACCCTGACCATCCACTAGGG 1601932 37 100.0 34 ..................................... CTTATTCAAGTCCTATACCGCCTTGGGGGACAAA 1601861 37 100.0 34 ..................................... AGGATAGTAAGTGGGAACAGGATGACAAGGAAAG 1601790 37 100.0 35 ..................................... TCAAAGGAGCGATCGCATGGCATCAGAGCAAACTT 1601718 37 100.0 34 ..................................... TATCTTGATATTGATAGCCGTATTTTTCTTGGGA 1601647 37 97.3 0 ..........A.......................... | ========== ====== ====== ====== ===================================== =========================================== ================== 59 37 100.0 36 ATTGCAATTTCTCAAAATCCCTATTAGGGATTGAAAC # Left flank : ATTTCTTTCATCATCTCTACCCTAAATTGGCGGAAACTTTATTGTTGGTTATCAGTACAGTAGTACAACAACAAATATTACAATTTATGAATTAGTTTACCGTAATATTTTAGATTCGTTTGCTGTCCAAATGTTTCTTCTATATGGCTTTTGTCAGAGAAAAGCTGCCTGTATTGGCAAAGAATAAGCCACGGGACTAAACAATTTTCTCTACTGAGTTACCTTTTGGCTAGGTTCCCCTATCTCAAATGCGCGGAAGGGTAGGTGTACAAATTCTACAGTCCCAAAAAAGTACTTCTATTCCAGATACAGTAAGGTTTTCAACCAATTAGCCGCCTAATCCTAATCCGCGCAATCTCTGAAATGCTTACCAAAAGACGATTTCAGCCTTTAAATTTTTTGGCACTCTTTCCAAACAAATTCTCTAATGCTATGATTGCCCTTGAATCGCGCAACCGCACCTTGAAAACTAAATACAGCTTGGGTTTCAGGCTCCCGCT # Right flank : TGGTTTACAGTCCGTTTGGGGTTCCTGCTGGCTGGGGATTGCAATTTATCAATAGTAAAAACTAAAAGTTGTGTAGTAGCGCAGCAAGCTTAATTTGTTGGGTTGAGTCATCAGAGAATATTTTTTTTGTTGGTGTATTTTCTAGATTGTTTTAACCCAATATTTTAGGCTTGCCGCGCTACTACTATTTTTCTTAACTGAACGATATTGATTTATAGTGCGATCGCTAATCTTCTAAAGCGAGTGGACGTTAGAAAGTATCAACTTGCAAAAGTCAGTTTTCTGAAAAGGAAAAAACAGATGAACACTGATAATTTCTCTGTGTTCATCTGTGATTTTCTAGTGTCGATACCTGGGAATTAAACGATTAGGCGGGTTTTATTTCTGGATTACCATCTGTAACTACAAATGAAGCCTTTTTGCTAATCGTGCCAAATGGAGTTTCCACCTCTGACACCGCAAGATAATCTGTCTTCCAGGTTGTGGGAGTCACATTACAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCTCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 4 3341198-3338173 **** Predicted by CRISPRDetect 2.4 *** >NC_010628.1 Nostoc punctiforme PCC 73102, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 3341197 37 100.0 34 ..................................... GGCTTGGAAGACATCGTAAAAATTGAAGAATAGG 3341126 37 100.0 36 ..................................... TTAATACTCAATGGCGCCGGATCATTGTTGATTCAT 3341053 37 100.0 35 ..................................... CGTACTGTGTCCGCTTGTGTTCCCAGTCGTCTTTT 3340981 37 100.0 34 ..................................... GCCACAACAACATCACAAACAATTGATGGTGCAA 3340910 37 100.0 37 ..................................... TTTACGGAAACAGATACGAAATGAGGCACAGAAATGG 3340836 37 100.0 36 ..................................... CACGCCGCAGAGGCTTGCCACCGGGGCGACGGTAGG 3340763 37 100.0 36 ..................................... CGCAAGCAATAATACTAGGGGCGCTCCCTAGAAAGG 3340690 37 100.0 40 ..................................... TCATCGAAATACTCGCGATCGCCATCAGCAGCACGGTAAA 3340613 37 100.0 35 ..................................... AACAAAAGCATTTAGAACCATTACGGGAGTGCCAA 3340541 37 100.0 35 ..................................... AGGTACTGGAAGCATTGGAATTATTCAAACCAAGA 3340469 37 100.0 39 ..................................... TTGTTCTAACCTACAATACAATAGCCTCGCAACATATAG 3340393 37 100.0 36 ..................................... CACTTCCTGCTGGACTAACTGCCCATTCAGCGAAAG 3340320 37 100.0 32 ..................................... TTTTATTGTAGAGACGTGAGCAGATCGTGAGC 3340251 37 100.0 39 ..................................... GAGTTTGACTATCCTACTCCTGATAGTTTATCTGATAGA 3340175 37 100.0 34 ..................................... CTTCAAGTTTTGCTTCAAATACCAGCATATTTAC 3340104 37 100.0 37 ..................................... ATTTGTCGAGATTCGCGGGGAAGCACCACAAACTCAG 3340030 37 100.0 36 ..................................... CAAGGGAAGGAATACTTGCAAAAGAATTATGGAAAA 3339957 37 100.0 33 ..................................... TGAAATAATCCCCAGACTCAACTGCGAGTAAGT 3339887 37 100.0 37 ..................................... AAATGGCTGCAAAGCTTTGGGCGGATAAGTTGCGCGA 3339813 37 100.0 37 ..................................... TAATGCTTTTTTTGGACTTTGAAACAACAACAATAGA 3339739 37 100.0 39 ..................................... TAATTATATTCCTGACTGCACATATCATATCTGCAATAA 3339663 37 100.0 34 ..................................... AGATGGAGTACTGCAAGCATGGAAATCACAATGC 3339592 37 100.0 35 ..................................... TTGTGAAGCAAAAGGAACAGCAGCAATCAAAGGGA 3339520 37 100.0 34 ..................................... CCGCCAATCCTTCTCAGTGTCCGGCTTATTGGTT 3339449 37 100.0 35 ..................................... AAGCCTACATGGGCTACCCTGCCACAAGCTATAAG 3339377 37 100.0 33 ..................................... CTGAAAAAATGTATAAGTAGGGCATTCATGAGA 3339307 37 100.0 35 ..................................... GCGAAGCCAATACGCCGGACATTGCCCAGGATTAG 3339235 37 100.0 37 ..................................... AACGGTGCCATCAGAATTCAAACCAGGGCGGAATAAA 3339161 37 100.0 38 ..................................... TTGGAACTGTTCACGGAATTGATTTAGCCCAGGCTTTT 3339086 37 100.0 37 ..................................... TTGGCAACTCTTGAAAATAGAAAAAGTCAAACCAGAA 3339012 37 100.0 35 ..................................... AGATTGACCCTAATCTTTTCTGGCATTTAGTTTAT 3338940 37 100.0 34 ..................................... TGGTACTGGAGGTGGAAGAATGGTTATGCCGAAG 3338869 37 100.0 35 ..................................... TTTTCAGCTGAATACAGTTGGATGGAGATATGCAA 3338797 37 100.0 34 ..................................... GTGCATATCCAGCATCCCACAGCATACGTTGCTG 3338726 37 100.0 36 ..................................... CAGCATATTACAACAAAGTAATTCAAGTAACACAAA 3338653 37 100.0 35 ..................................... ATCTAATGGGACTATTTGACGGATTAAGTAACAAC 3338581 37 100.0 40 ..................................... AAATACTAAATTCTGTTTCAGATTACCTCTTCCCCAAAAA 3338504 37 100.0 33 ..................................... ATGGTCAAAAAAATCAAAGATGTTTCTGATTTC 3338434 37 100.0 40 ..................................... CTAGCAATATTTGGGTATCGGCAAAGCAGACCAGTTTAAC 3338357 37 100.0 37 ..................................... TAAACCTTTAGCGTTTTTACCAGTTGTGAAATAATAT 3338283 37 100.0 38 ..................................... CAAGTTGCTGAACGGTGGCAGAGCCAGAGGAAGGAGGA 3338208 36 91.9 0 ........................T....-......T | ========== ====== ====== ====== ===================================== ======================================== ================== 42 37 99.8 36 ATTGCAATTCATCAAAATCCCTATCAGGGATTGAAAC # Left flank : CCTTTCTTTTTATCTCCTGTTTCATCAATAATTAAAATGATTGGTCTTCCTTTTAGTACCTCTAAAATTAGTTGTAATCGCAAAGCTCTTAACTGTTCTACTGACCATGATGGTGTAGTTAAGAAATGATGTAGTCCTTGATAGTTATCTAGCCCGACAATTTTCGCTATTTCAGGTAGACTTTTCCGTTTTAAATCGGAAATACATCCTATATGTAGATATTTGAAAGCTTCAAAATTCCTAACATCTGAAAACAGGTTTTTATACCATAAGCAATATTCATCCACAAACTTGACGGTTTTTATGGGTGAACGAGGCTCTACCATGCTTTATGTCTTGGTTCTAGGCTTTGTACATTATTATACTACCGCGATAGTGACACAAGAGGGTTAAAGTTTCCTGGCGCTCTTTCCAAACGAATTCTCTAATGCTATGATTGCCCTTGAATCGCGCAACCGCACCTTGAAAACTAAATACAGCTTGGCTTTCAGCCTCCCGCT # Right flank : AGTTGCAACGGCTCCCTGCCCCCTGCCCCAATTAACGGTATAGCCAAACACGCAAGAGTGAAAGCAGTTGTTCAGTATCTACGGGTTTGGTGATGTAGTCTGATGCACCCGCTTCAATACACTTCTCGCGATCGCCTTGCATGGCTTTAGCTGTCAGTGCAATAATCGGCAAAGATTTAAATTGCTCGTTTTGGCGGATTAAGCTTGTTGTTTCGTAACCGTCCATTTCTGGCATCATTACATCCATCAAAACGACATCAATATCTGGTGTATTTTCTAATACGTTAATCCCCTCTCTGCCATTTTCAGCGTATAACACTTGTATTTGATAACGCTCCAGCATACTTGTCAGCGCGAAAATATTACGCACATCGTCGTCTACAATTAGCGCTTTCTTGCCAGCGAGTAAGTAATCTATGGAATGCAATTGTTCAAGTATTTGTCGTTTGGGTGCAGGTAAATTTGCTTGGACTCGGTGTAAAAATAATGCTGTTTCATCG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCATCAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 5 6983555-6982737 **** Predicted by CRISPRDetect 2.4 *** >NC_010628.1 Nostoc punctiforme PCC 73102, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 6983554 37 100.0 33 ..................................... GCGCTACTCAGGGGATAGCAGATGCGATGGGAT 6983484 37 100.0 36 ..................................... CCAATGTGTGTATTTCGCTGGCATTGCACTCCTAAT 6983411 37 100.0 33 ..................................... AGTAACGACGGCATGTTCCACAACGGTGCGGAA 6983341 37 100.0 34 ..................................... GATAGATTACCTGAATTTGCTACAGCACTTAATA 6983270 37 100.0 35 ..................................... CAGAACTTTTCGCGAATACCTTTTTCGTTACGTCC 6983198 37 100.0 33 ..................................... AGGATGTCACTTTTGATGAGAATAAGCTTACCG 6983128 37 100.0 34 ..................................... TTGTTTTACTGCTGAGTGTATTGGTAATCCTGGT 6983057 37 100.0 34 ..................................... GGCGAACTTCAAAACATCCGGGAAGAAGCTCTGC 6982986 37 100.0 35 ..................................... TGATTAATATTCCGATGCCCCAAATAATCTTGAAT 6982914 37 100.0 34 ..................................... ATTGGATTCTATCTGGCGGATGGCGATTAATGGT 6982843 37 100.0 33 ..................................... AACCATCCATCGGATTCCTCTAGATGCCTCCTG 6982773 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 12 37 100.0 34 GTGGCAACAACCCTCCAGGTACTGGGTGGGTTGAAAG # Left flank : AGCAAAGGAATTAGCACTTTCTGCTTACCATGATCGGCTAGCTAGGCGAAGTTGACAAATATCTGAACCTTGACAATAGAATATTAATAGCGCCGCAATTCATGCTGCTTGCAGCCTCTGAACTGTGTTAAATGAGGGTTAGTTTGACTGTAGCAATATAGTCTTGCTTTCTGACCCTAGTAGCTGCTCACCCTGATGCTGCTGTCTTTATGACAGGATAGGTGCGCTCCCAGCAATAAGGGCGCGGATGTACTGCTGTAGTGGCTACTGAATCACCCCCGATCAAGGGGGAACCCTCCCCAATTCTTCATTTGAAGGACTAAAATCAAGGCAAAATTTCTAAGAGTTTCGCGCAAGTTCCAAATACCTTGCCCCGTCTGAATTTATCGTTTTTCCATACAGATATGATTCTTGTGACTGAGGCTCAAATAGGAAATTGGGAAACATACGCGCTGAGGAAATCTAGAAAAGTTGCCCTACAATATTTTGAAACTGAGTGG # Right flank : GCAAATCTGAAATCATTACGCACGCATACAAAAATGTTTTAATAACCTGCCAGGTACTAGGTGGGTTATCATAATTTTTATTAGGGAGGGTTGAAAGAGAGCGCTACGTTGACATTATCGCTATAGTCTCTGTAAATAAATGACATTAATCTGTCACTGGCACCTAAACGACATCAATTCGTCCCGACGACAGTTAATTAGTCCCAACGACATTAATCTGTCACCGACGACAAATAATTAGTCACTGTACAAAAAAAATGGACGTAACTGGATTCGAACCAGTGACCTCTACGATGTCAACGTAGCGCTCTAACCAACTGAGCTATACGTCCTTAACCACACGAATATTGATAGTAGCATATACTTTTGCGATCGCACAAGATAAAGACCCAAGCTTTTTAAGGGGGTTTTAGATTTTGAGTGCGTAAATCCTAATTTCAAATAAAATCCTTATTATTTCGTTACAATCAGCTTGTGCGTTAAGCATTCAAGAGTTATCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCAACAACCCTCCAGGTACTGGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.80,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 6 7771304-7769881 **** Predicted by CRISPRDetect 2.4 *** >NC_010628.1 Nostoc punctiforme PCC 73102, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 7771303 37 100.0 36 ..................................... GAGCGCTTTGGCTAGTTGCCCCATAGCTAATCCCAT 7771230 37 100.0 47 ..................................... AAAACCGCATGTGCTTTCGCGGCGCAACTTGCCGAAATTTGGCATAC 7771146 37 100.0 35 ..................................... AAAACCGCAGGAGTGAAACGCAAAAAAGTACCGGT 7771074 37 100.0 34 ..................................... TCGCTGGACAGAAGGAGGGAGGGTCAAAAGTAAA 7771003 37 100.0 36 ..................................... AAAAATAATAGATGCACTAACAATAGCAAAAATCAC 7770930 37 100.0 34 ..................................... TCTTCCTGTAAAGACTGTTCGCCTTCCTGAAAAA 7770859 37 100.0 34 ..................................... ATTGGGAAGGGCAGCACTAGAAAACATTATCCTC 7770788 37 100.0 34 ..................................... GCTTAGAATCGCGCTCAAGACGAGAGAGAAAACT 7770717 37 100.0 37 ..................................... ACAGACACTTTCCGCAAGCGCAGGAAGCGAAATATAA 7770643 37 100.0 35 ..................................... AGAAGAAGATGTTGCCTCTGCAATTGAAAAAGCCA 7770571 37 100.0 33 ..................................... GGCAATCCCAGCGATCGCTCTCCAATTCGCCAC 7770501 37 100.0 33 ..................................... TTCATCCGAACATCAGTTTGGAGTCGCTCAAAC 7770431 37 100.0 34 ..................................... TCAAGCCAATCGGTTGGTGATTCCGTATCATCTA 7770360 37 100.0 34 ..................................... GAGTGGGTAGGCTTTTGAATGATTAGTTACCCAT 7770289 37 100.0 34 ..................................... TTGTCACTGGAGCTATTGATTTTGTAGATAGAGA 7770218 37 100.0 40 ..................................... TATCATCGCGAATCCATTCTTTTTGTTTAGCATCCCAAAA 7770141 37 100.0 34 ..................................... TTGTCACTGGAGCTATTGATTTTGTAGATAGAGA 7770070 37 100.0 40 ..................................... TATCATCGCGAATCCATTCTTTTTGTTTAGCATCCCAAAA 7769993 37 100.0 39 ..................................... GACTGCTAGGGCATAATCTCTTTTCTGTTGTAGTGGGTG 7769917 37 97.3 0 ................................A.... | ========== ====== ====== ====== ===================================== =============================================== ================== 20 37 99.9 36 ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Left flank : CCTTCTTTTTCGATCCCAATTTCGATGTAGAAGTGAAGCCGATTGAATTAGATAATTATAGTAGCGAATGATAATATAGGCGATCGCTGGGATAACGCTAACATTCATGATTTTCGCGGAACTTATGGTGATTATGTGTTGAATAAGGTGTCTAAGGTTTTTCCAGAATTGCGGCGAACAGTATTATAGGGTTTTAAGCTATTTCTTCTTTGCTGAGTCACCTTTTAGTTAGATTCCTGTATGTAAAATGCGCGGAAGGGTAGGTGTACAAATTTCACAGTCCCCAAAAAGTACTTCTATCTCAACACCAGCAAGCATTTCACCTCACCAATCACCCTATTTTCATCCGCGCAATCTCTGAAATGTTTGCTAAAGATGGATTTCAGCTTTCAATCTGTCTCGGCACTCTTTCCAAACAAATTCTCTAATGCTATGATTACTCTTGAACCGCGCAACCGCACCTTGAAAACTAAATATAGCTTGGGTTCCAGGCTCCTGCA # Right flank : TAGCTGTTTCTACTTTTTGCAATACCTTACATTCTATATTGAAACCCAAAAATTGCTGGTAATACTGGGGAGAGAAGCAAAAATGTATGAGTCAATGGGTTTATAATTGGAAACTGTGACTCGGCGAGAAGTTTGCTCTAAGGCATCCCTGGCTCAAATCTCCTTCCAAGGGGAAATGCTAAAGGCGAACGGTGACAATTCATAATTGGAGCGAAGCAACTGGTGAGCAGTTTATTACAAGGAGTTAACTTGTACTTAATTGGCATGATGGGCGTTGGTAAGACGACAGTAGGGCCCTTACTAGCAAAGCATCTGGGTTATGGGTTTTTGGATCTTGATGGTGTCATTGCCAAAGCTACAGATAAATCTATCAATCAGTTATTTGCCGAAGAAGGTGAAGCAGGGTTTCGCCAAATAGAAAGTGATGTACTTTCACAAGTTTGTGCTTTTACAAAATTGACTATAGCAACCGGTGGGGGCATTGTATTACGGCGAGAAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA //