Array 1 3208871-3206891 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040506.1 Hungatella hathewayi WAL-18680 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 3208870 30 100.0 34 .............................. TGTCCGGCAGCTCCCTGTTTGTCGCCATAATATC 3208806 30 100.0 36 .............................. TCAATATCATATGCGTATAAAGAATCCGGTTATAGC 3208740 30 100.0 35 .............................. ACTCTTTTAGAGTTAAAGACCAAGATGGACAAACT 3208675 30 100.0 34 .............................. TAGGTCTGTCCTTCCTGATTGACACCGGTATACA 3208611 30 100.0 34 .............................. GCTATCGGATTGATTAAGAAGACAGACATGCAGT 3208547 30 100.0 36 .............................. CACGGAAGCCACCCTTCTAACCGCCATGGAGAATGC 3208481 30 100.0 35 .............................. ACATAGCTGCACTCATACCCGCAGCTGATTTCCCT 3208416 30 100.0 36 .............................. AATTTCCTGTTTCGGCCAGTTATTTTACCTTGAGAC 3208350 30 100.0 36 .............................. GAATCTCCTTCTCCATCGGCATCCCCTCCCTTCTTC 3208284 30 96.7 36 ..A........................... TTAAGGATATGACCGGTATAGGGGTACTGGTACCCG 3208218 30 100.0 35 .............................. TGCACTATATGGTAAGTTGGTCCGGTGGAAAAGAT 3208153 30 100.0 36 .............................. GGTACCGGATGATGATTTTGTTCTGACCCAGGTCCT 3208087 30 100.0 36 .............................. ACGAACGGTATTGCAACGCTGTCGGTTATCTTTATC 3208021 30 100.0 36 .............................. TCCATGGTAAAGTGCAGGTAAAGAAGTTTCTTAATT 3207955 30 100.0 36 .............................. GCAATATTGCGTCTGGAATCAACCAGATTTCAGCAT 3207889 30 100.0 35 .............................. GAAAGAGTGTTTGTTGTTGCAGGAGTAAATGAAAA 3207824 30 100.0 34 .............................. TCCTTTCTGTTGCGATATCGCAATTTGAGTATAA 3207760 30 100.0 36 .............................. TGTAATTTTTTTCCCATGATATAAGATGGGTCATCA 3207694 30 100.0 35 .............................. AACTACGCAAGATGGATGTGTGGAAACTTTGGAAC 3207629 30 100.0 36 .............................. TCTTTGATAAGTTTTGTATTCCTTCGTCGAGGATGT 3207563 30 100.0 35 .............................. CCAGTCTCCTCATCGGCGCCGGTCTCCGTCTGTTC 3207498 30 100.0 34 .............................. CAACAGTCACTTGAGGAAACAGCGGTTTTCAAAG 3207434 30 100.0 34 .............................. AACGGTGCAGCCTCTACCGAGCCATTTGACCATG 3207370 30 100.0 34 .............................. TAATACCCCTCTTTATTTTTGTATTTCATATCCT 3207306 30 100.0 35 .............................. GTATAATTGCCAACCACCAAGCCGTCCCCATTTTT 3207241 30 100.0 35 .............................. TTGCATACAGAAAAATGGTTTCCAGGACCTTATGG 3207176 30 100.0 36 .............................. GGAGGTAGCAAAATGAGAACAAAAAGCGAGATATTG 3207110 30 100.0 34 .............................. CATTTGAGATGTATGCTGGACTTGGCAGCAATAA 3207046 30 100.0 34 .............................. GATAAGGTTTTTGGAGGCATTGTGAAAGGAGCAA 3206982 30 100.0 33 .............................. TAGATGCCGTATGGGTCTGCGTTGTCGACATGG 3206919 29 96.7 0 .........................-.... | ========== ====== ====== ====== ============================== ==================================== ================== 31 30 99.8 35 GTTGAAGAAGAACAGTAGCTGTATTTAAAT # Left flank : TCCATTTTCTCTGAAGGAGGGAAAGTAGATGGGGAAATCAATGAATTATAATTATGCATTTGTGTTTTATGATGTGGGAGAAAAGCGGGTGCAGAAGGTGTTTAAAATTTGTAAAAAATATTTATCGCATTTTCAGTATTCAGTTTTTAGAGGTGAGATGACTCCATCAAAATTGATTTCTTTAAGGAGCGATTTGAAGAAAGTAATAGATACGAAGGAGGATTTTGTTTGCATTATAAAGTTGATGAATGATAATGTTTTTGGTGAAGAAATATTAGGAGAGGCAAATGGGTTGACTGGGGAAGAGCTTATTCTTTAATGGATTTTACCAGATGGGGAGTTGGAAAGAATTGGCGGAAGCAGCATGGATACTGGTTAAAATGAGAAGATTGGGAGATGATTTGGAAGGAGGGGGAGTGGCTGGTAAAAAAGTTGAAAAGTGTTGATTTTATATAAGGATATGGTATTATTGAGGAATGAAGAATGTAGTAAATGCGTGG # Right flank : AAGTATTTGTGAATGAAGATGACCTTGATAGGTTAAAAAAGTACTAGCATATTTAATTTCTCACAGTATATTATATTTTAGAGAGTTTTAACTGTATTGCTTAAAAGGTATCTCAAATCCTATAATAATTTGAGATACCTTTTATTCTTCTGTTATATCAGGTTCATATACTAGGATTTCTTCGATTCTGCAGTCAAGAATTTCACAAAGTTTGTTTAGGATGATTGTTTTTACGACTTCATTTTTTCTGAGGCGCTGGAGTTGGGCTTTATCGATGCCGTAATCTTTGATGAGTTTATATTGACTGATATTTCTTTTTTTCATGGTTTCCCAAAGGGGGTCATATTTTATCACGATATAAATTCTCCTTTATACTTGTATTTTATAGGTTGAAGCATTATAATAATATGGTGCGTGTACACACCATATTTAAGCGGATTTATATAAGAAAAAGAGAGGTATTTCATGGATAAGGTAAGAGTAGAGTCTAAAAATACAGA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAGAAGAACAGTAGCTGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 3219836-3219087 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP040506.1 Hungatella hathewayi WAL-18680 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 3219835 28 100.0 38 ............................ TTAAGAAATCGACAGTAACATTAAAATAGTCGGCTAGG 3219769 28 96.4 38 .............A.............. GGAGGTTGTATACCGCAATACAGGTGAGCGCCTTCCGG 3219703 28 100.0 39 ............................ GATATTGATTGATGATTACAAAGCGAAACAACTTGCAGT 3219636 28 96.4 36 .................A.......... GAAATGCTAAAAGCACCACCAGAACAATCAATCCGT 3219572 28 100.0 37 ............................ GCTGGTAAGGTGCAGATTGAGTATCACTCTGATGGGT 3219507 28 100.0 37 ............................ TCTGCTGTGGAGATGCCTGGGAAATAGGTTGTATGGT 3219442 28 96.4 37 ..........T................. ACAACATGGACCCGGACAGTCCCATGGGCGTCGCGGT 3219377 28 100.0 39 ............................ TTCATGGCCCGTAGATGCCCGTTGACAGTGGATGTACGT 3219310 28 96.4 38 .............A.............. TATAGGCCCTGGAGGAGACAGGGCGGCCATCCGGAGGG 3219244 28 96.4 37 .............A.............. TAAATTTTTGCAAGATATACAAGGGCATGGACATTAG 3219179 28 100.0 38 ............................ CCTTTGGAATTGGTTATTGTTTCGGTGACCATTCTAGT 3219113 27 75.0 0 ....A.....T.A..T-..A...G.... | ========== ====== ====== ====== ============================ ======================================= ================== 12 28 96.4 38 TGAAGAAGAACAGTAGCTGTATTTAAAT # Left flank : CACAGACGGTTGGGTATTTGGCTGGAATCGAAGGATATCCAGAGTCAGAAATACCGGAAGTACTGCCGGTGATTGAGGAGGAGATGCTGGTTATGAGAGGTTTTACCAGCAGGAGGATGGATGAACTGCTGATGAATCTGAGAAAAGCCGGGGTGCCGAAGATTGCGCTGAAGGCTGTGGTGACGGAGAGTAATTGCGGGTGGTCGTTTTATCATTTGTATGAAGAGATTAGGGAAGAGCATAAGAAGATGAGTTTATGATATGGGGATAAAAGTGGAGAATTGCTTTAACAGATACTCTTCATGGGAAATATTTAAATATAAATTTACCAGGCAGAAAAGTCTGGTAAAAGCTGAAAGACTGCATAAATGCTAGTTTCTGAAGGGAATTAGAAGAGATATAATAAAGTGCGGGGACAGCTTGGTAAAAAATTGAGTATATGTTGATATTACTGGGGGATATGGTATTATAAAGGGAAAAAATGCTTTAGATATGTTGGG # Right flank : AAATCACAGGTCTAGAGTATAATATAAATAGTGGACGAGGTGGTTTTGCCTTATTTAGGGAGGTTGGCTATGATTGAGAAATTGATTGCAGAAGCAACTGAGTGTGATTTCAAGGTTGCTCTTGAAACTAGAAGGCCTAAAAGCTGGTTGAAAAGTGTCAGCGCTTTTGCTAATGGTATTGGTGGAACCTTATTTTTTGGTATTGATAATGAGGGTAAAATTACAGGGATTGAGGATATTCAGTCTGACGCAGAAGCGATTAGTCGTTTTATTAAGGAACGTATAACGCCATTGCCTCAATTTGTTCTTACTCCTGTCAGGGAGGGTGATAAAGATATATTGTTGCTGTCAATTGCTGCCGGCCGAACAACGCCATATTATTATAAGGCGGATGGCATAATGGAAGCATATATTCGTGTTGGAAATGAAAGTGTGGTGGCACCGGATTATGTTGTTAATGAATTAATTTTAAAGGGGTCTAATCGCTCCTTTGATACATT # Questionable array : NO Score: 2.96 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGAAGAAGAACAGTAGCTGTATTTAAAT # Alternate repeat : TGAAGAAGAACAGAAGCTGTATTTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //