Array 1 345888-346710 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGSXW010000001.1 Lactobacillus crispatus strain 5.1 scaffold00001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 345888 29 100.0 32 ............................. AATTCTTCTTTGACCTTGTTTCATCTCCCAAT 345949 29 100.0 32 ............................. ACACAAAAGCAATATGATCCTGAAAAAGCAGT 346010 29 96.6 32 ............................C TTAATCAAAGCTTCCTCATCAGAATTATTCCA 346071 29 100.0 32 ............................. TCCAGTAAATTCGATTTTGCCAATCTTTTCTT 346132 29 100.0 32 ............................. ATACCAAGCCAAGCACCAATGTGCCGATACAA 346193 29 96.6 32 ............................C AAGGCTGAAATTTCGGTTAGCGGTATTTTAAA 346254 29 100.0 32 ............................. TAATTACTCGTTCAAATTTTAAATCTAAAAAT 346315 29 100.0 32 ............................. GATCCTTCAGCATTCATGCATATCAAGTTAGA 346376 29 100.0 32 ............................. ATTATTCATGGGATTGCACGAAACACTGATGA 346437 29 96.6 32 ............................C CCGAATAGCCCACGTCCCATTTTTTCTATAAG 346498 29 100.0 32 ............................. GAGCGCCGGTTTTCCACGCCGGCTAAGAGCTA 346559 29 96.6 32 ............................C TAAAGTCGAAAACACGCTGCATGATATGCAGG 346620 29 100.0 32 ............................. AACTGATTTAGTGGGTGCAGTTCTGGATTGAG 346681 29 82.8 0 ...........AC....T......T.A.. | A [346702] ========== ====== ====== ====== ============================= ================================ ================== 14 29 97.8 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : TGGTGGTTGATAAACCAACGCTTGAAGTTAATAATGCAGTACCTAACAAAGAAATTATTAATTTACGAAATTTCATTATAAAAACAAACCAGATAAGATCTGATTTTTGTCTCCTCTCTTAATTCACGTACACTATTGTAGCTCAGCAGTTTTACGATAAAGTTACAATTAAATTTCGATTAATAACAAAAAGTTAGTATAGGTATATGTGAATATGCTTTTGGTTAGGCTAGTTAAAAGCGGATGATAAAGCAGTGTCATGGCTAAAGTGTTTGGGTGAAATTCTTAATTGTGAGCAAGAAAGATTGGCAGACAAATAATATTTTTGTTTAGGAGGAATCATAGCAGAATGATATTATGATTCCTCTTTTTATTTGAATATTATGTCCAGCAGATATTGTCTATTTAATAAAAATCGATATACTTGGTAGTAGGATCAAAGTGATGAAAAAATGGTGTTTGCGTATTTTCATTTGGCGCTATAAAGGGATTTGTTTACT # Right flank : TGTCCTTGAGCGCACAGATAAATAGCCTGTAAACGCCGGTATGCCAGTATTTTTGATAGATGAAAAGTGTACTAATTCCTCTTTTGGTGATTGGAATTAGTACACTTTTTGCTTGTTGAGCTAGAGGGTCGAGTGGACAACGCGCTGGATTTTTAGGTTGTATAGATAAGTGTCCTTTTGGGGAGTTGAGTTGGTTAAGTTGATGAGAGAAGCAGTAATGGTTGATATGACGATAAGATAATGGATGTTAATTATTAAAGATATTTATAATCAAAGATTTAATCAATTTTTGTAAAATGCTTTTATGCTAGATTTATATCGCAATAATCAAATGGAAGGATGAGAAATATCGTTGACTATATTGCAAAAATCAAACCAATAAATGCGGATAAAATTGAAACACAGGCGCATGGAATAGCAATATTCAGTGAAAATGGTAATAGCCTTCATATTCATGTGGAAATGTTTGATACGCCTGCCAATATTGAACATTGGGAACA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2107-853 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGSXW010000034.1 Lactobacillus crispatus strain 5.1 scaffold00034, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2106 29 100.0 32 ............................. ATTGTTTTTCTTTGCCAATTTTGCGACCCGTT 2045 29 100.0 32 ............................. GTCACTTAATGCAGCACCTAAACCTTTAGCTA 1984 29 100.0 32 ............................. TAGATTTCATGAAATGCTACAAGATAACTATA 1923 29 96.6 32 ............................C ATTCTACCAGGATCATAAAAAATAATTGAGTG 1862 29 100.0 32 ............................. CACGTTGTCTCTTATATCGGGAACAAATTGTG 1801 29 96.6 33 ............................G CATTCTTTACTCCTGAGAAAAGATAAGCATATT 1739 29 100.0 32 ............................. TAAAGTACCTGTTGACATTGGATGCATTCTTA 1678 29 100.0 32 ............................. AGCACTGCCTTTATGATCTTCAGAACCGAAGT 1617 29 100.0 32 ............................. CCAATAACATCATTTTGCAAATTAACGATTTG 1556 29 100.0 33 ............................. GCTTCTTGATATTTAGTCATAACCAAAACCACA 1494 29 100.0 32 ............................. TATTTTACCTGAAACTGGGAATGGAGATTCTG 1433 29 100.0 32 ............................. ATGCTGACGATGAAGAAAATGATATGGCCATT 1372 29 100.0 32 ............................. CATGTACAATCTACAACTAACAGAGCTAAAGG 1311 29 100.0 33 ............................. TTATGAAAGGTGGTTCCAAATGGGAATTAATGA 1249 29 100.0 33 ............................. TTATGAAAGGTGGTTCCAAATGGGAATTAATGA 1187 29 100.0 32 ............................. GATGGTTAAGCTCGTAATCACCAAGCAACTGT 1126 29 100.0 32 ............................. ATATCATGCAATTAATCGGCAAATATAAATTT 1065 29 100.0 32 ............................. TACGCCGGGCTTGTGGGCTTTTAGGGACTTAC 1004 29 93.1 32 ........A...................C TTAAATCTTTGACTCATAGAAAAAATAAAAGT 943 29 96.6 32 ............................C GGCGAGTGTGGGGTTTGGGGCTAGCCCCAAGA 882 29 89.7 0 .........................AA.A | C [856] ========== ====== ====== ====== ============================= ================================= ================== 21 29 98.7 32 GTATTCTCCACGTGTGTGGAGGTGATCCT # Left flank : GTATGTTTAGGGAGACAAGAAAATTCTATTCGTTGGATGACTAATGAGACAGAAATAGATACAATAGTAATTGACAAAGTGATGAAATTTTGGGATCTATTGTTTTGTGATTGTTGTTATATTGGGATTTGTTTAC # Right flank : GCAGTCTTTTTGTACTATAGACTATTTATGATATTATGATATCTTCATCAGAATATCTATAAAAAATTAATTTTAAATACTAAAGGAGTCATGATATGGCACGTGAACTAAAAGAAGTTCAGGGTATTATCTTTAAAAGGCAGAAATATAAAGAAGCAGATTTATTAGCCAAAATTATGACTAAACAAGATGGAATTATGACTCTGATTGTTAAAGGAGCCCTGAGGCCTAAATCACGATTAAGTGCAGCAACATTAAATTTTTCTATTGGTACTTACGTAATTTATACGAGCGGAAAGGGCTTAAGTAATTTACGCACATATAAAGAGGCAAGGCAGTTTGATGGCTTATATAATGATTTAACCAAGAACGCTTATATTTCTTTTATTTTTGATTTAATTGATCACGCCTTTGTAGAATATCAGCCAATTGGTAAATATTATGATTTAGCTTTATTTGCTTTAAAAAAAATAGATAGTGGCGTTGATGCAGAAATGATT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTGTGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //