Array 1 90414-89165 **** Predicted by CRISPRDetect 2.4 *** >NZ_SAGF01000001.1 Escherichia coli strain TZ30_3P scaffold_0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 90413 29 100.0 30 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCG 90354 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG GA [90350] 90291 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 90230 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 90169 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 90108 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 90047 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 89986 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 89925 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 89864 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 89803 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 89742 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 89681 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 89620 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 89559 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 89498 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 89437 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 89376 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 89315 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 89254 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 89193 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.7 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 117255-115963 **** Predicted by CRISPRDetect 2.4 *** >NZ_SAGF01000001.1 Escherichia coli strain TZ30_3P scaffold_0, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 117254 29 100.0 32 ............................. GCGTGCCAACGGAATGCACCCTCATTGGTGAT 117193 29 100.0 32 ............................. TCACTGTATACCCAACTATTGGAGATCATGTA 117132 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 117071 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 117010 29 96.6 32 ..A.......................... CGCCGCATTAATATTGATGACCAATATTCATT 116949 29 100.0 32 ............................. ACAATCAGGGAACGATTGTTGACACTGTAAAA 116888 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 116827 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 116766 29 86.2 12 ...............C.A.C....G.... CAAACAGAGCCG G [116740] Deletion [116726] 116724 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 116663 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 116602 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 116541 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 116480 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 116419 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 116358 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 116297 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 116236 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 116174 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 116113 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 116052 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 115991 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.8 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //