Array 1 40358-41809 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQUJ01000023.1 Halomonas ilicicola DSM 19980, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 40358 28 100.0 32 ............................ CCACCAAGCACGAGCCAAGCGCAGCTTGTCAG 40418 28 100.0 32 ............................ GATGATGTGCGGTCCCTGGTCGATGTGCATGA 40478 28 100.0 32 ............................ TGGTCGAGTGGGATCGGTGAGGGTGTTTGTCC 40538 28 100.0 32 ............................ ACGATGACGATGCCGCTCCAGAGCAGCAATTT 40598 28 100.0 32 ............................ AGGCGTGTACCGATCTCGTTGATGGTAATTGC 40658 28 100.0 32 ............................ AAATTGTGAAAGGTGCGACGTTTTGTCTGTAA 40718 28 100.0 32 ............................ ACCGCCATTTGAGGGTGTCGATGTTGATTGGA 40778 28 100.0 32 ............................ ACGGCTCTGACCAATGCGGGAACCGCCATCGC 40838 28 100.0 32 ............................ AAGCACCAGACGTGAACATCCGAAAGCACCGC 40898 28 100.0 32 ............................ ATCACGCACCTTCGATGCCGGGAGGTTCATAA 40958 28 100.0 32 ............................ ACGGCTCTGACCAATGCGGGAACCGCCATCGC 41018 28 100.0 32 ............................ AAGCACCAGACGTGAACATCCGAAAGCACCGC 41078 28 100.0 32 ............................ ATCACGCACCTTCGATGCCGGGAGGTTCATAA 41138 28 100.0 32 ............................ TGGCTTGGTGACGCGCATCAATTCTCGAACCA 41198 28 100.0 32 ............................ ATCCCGCTGAGGCGCATTTTCTATCTGGAGAC 41258 28 100.0 32 ............................ AATAGCTTTCCTTGAGTTCGACCGCAACAGCC 41318 28 100.0 16 ............................ AGGTGGNNNNNNNNNN Deletion [41362] 41362 28 100.0 32 ............................ AGGTGGAGTTGTCGGGACGAGTTATTGAGGGC 41422 28 100.0 32 ............................ AAGGCGCATTTTTCGCTGCGCTCAACTGCGCA 41482 28 100.0 32 ............................ AAGACGTCGACACCAACGTGCGGCGCCCCGAG 41542 28 100.0 32 ............................ AGCGAGGCCACTCGCGCCAATATCGACGACAC 41602 28 100.0 32 ............................ ATACCGGCGCAGAACTAGGAGACCCACCATGA 41662 28 100.0 32 ............................ TCAAGGCGCACCCAGGGCGACTCAGGGTCGCC 41722 28 100.0 32 ............................ TACAAAACGAGTCATATCCAAAGATAAAACAG 41782 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 25 28 100.0 31 GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : AAAGGCTCGAGCAACTGATGGAGAGTGACTGGCTAACCGGTATGCGCGATCACGTCACGTTGAGCAATGTGCAAGCGGTACCCGAAGGAGCAGCCCACGTTGAGGTAAAGCGTCGGCAGTTCAACACAGGCAGCGAAAGCCGCGCCAAGCGCTATGCGAAACGCCACGGTGTAAGCCTGGAGGAAGCGCGGCGGTTATACGCCACACCGGCCTCACGCCGCATCGAGCTGCCGTTCGTGAAGATCAATAGCCGTTCAAGCCAACAGCGCTTCTGCCTGTTTATCGACCATGGCAAGCCGCAGAAGGAGCCCGTGCAAGGTGCGTTCAACCACTACGGTCTAAGCCACGATGCCACGGTACCCTGGTTTTGACCCTTTTTTGCAAGGGATAAATGAAGGGCGGTAAAACAACGGGTTAGCGGTGTCGTCTTTAAAAGGGTGATACCGTGCCTTTTACAGGAGGCTCTTTAAAAATCAGACAATTAGCGCTATTTTCTTCTA # Right flank : AGGAGAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 6-874 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQUJ01000033.1 Halomonas ilicicola DSM 19980, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6 28 100.0 33 ............................ AGGATTACCAGCTAGGCGCGGGCGGATGATAAC 67 28 100.0 32 ............................ ACCTACGACGCGCCTCAAGGTGAGCGCTCGAT 127 28 100.0 32 ............................ GAATGAAGAGTTCACCTTTGCGCCGCAAAACG 187 28 100.0 32 ............................ TGAACGGGAACGGGCGCGTGCAGACCCTGCAA 247 28 100.0 32 ............................ ATAGGTCCAGCCATCGGGGAAACGCCCAATCA 307 28 100.0 32 ............................ CAGTGCTGCTCAAGATGCTATGCAGGCGATGC 367 28 100.0 32 ............................ AAATAGCAAAGGCCCTAAAAGTAGACCCCCTA 427 28 100.0 32 ............................ AATTCGTCGACGCGGGTGCAGATGATGTCGTC 487 28 100.0 32 ............................ AAATAGCAAAGGCCCTAAAAGTAGACCCCCTA 547 28 100.0 32 ............................ AATTCGTCGACGCGGGTGCAGATGATGTCGTC 607 28 100.0 32 ............................ AGTTTGGGCGGCGTGCTTGACGGCCTCGGTCG 667 28 100.0 32 ............................ AAAACACGGGAATTGGGGCCCCCGAATTAGCG 727 28 100.0 32 ............................ GGGGGAATCAAATGATGGCTGTCCTCCCTGGG 787 28 100.0 32 ............................ ATAAGCGCCCAGACGAACCTTGCGGCCGTCGA 847 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 15 28 100.0 32 GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : ATCGAG # Right flank : AGTTCCCGAGAGATAAAATCCCCGGCCGGAAAAAGTTCGCTGCCGCCCACGCCGAATTCCCCACGCCCGTGGGGATGCTCCTAAACAGGCGCTCAGGACGTGAGAGAATCCTCACCGTTCCCCGCAGGCGCGGGGACCAACCGGCGCTGGCACGGATTATCCGCGGCGAGGATGGGCCGTGCCTCACAGACGCGGGATCAACCGCCGTCGAGGCCTTAGCCGGGCCTCGGGAGGCGTTGGTGCCTCAGTGCGTCTGTTCCATATCGCGCACCGCCCGCTCGATGACCTCGGCGGCGACGCCTCGTGCTTTCAGCGCCTCGACCAGGCGCTGCACACCATCATCGAGATACTGCGCCTCGTCGCGCCGCAGCCCCTCGCTGACGTAGGCCTTCAATAGCGTTTGATAACCCTGGAAGCCTTTCAACGGCGCGATTGCCTTGAGCGTTTCCACCACGTCTTCCGGCATGCGCAGGGTCACCGTCGTCATGGGGCGGTCCTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //