Array 1 325297-326467 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JTLY01000002.1 Haemophilus haemolyticus strain ATCC 33390 QR74_0002, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                      	Insertion/Deletion
==========	======	======	======	================================	=====================================	==================
    325297	    32	 100.0	    35	................................	TCTACAACAGGATTCGCTATTGCCGCCGCAGCATT  	
    325364	    32	 100.0	    34	................................	CACCTAAAAATGTTTCCAACACCATAAAATTTAG   	
    325430	    32	 100.0	    35	................................	GGTATGCCCTAACGAATAAAAGAAATCAGGCAATA  	
    325497	    32	 100.0	    34	................................	TTTTGGTTATGAAACACCTGACGGAATTAATAAG   	
    325563	    32	 100.0	    34	................................	GATTTAGCCCTAGAAACGACTTGTCCGCAATGTA   	
    325629	    32	 100.0	    34	................................	CATTAGATGCTGGCAATCCAGTAGCCGGATTAAT   	
    325695	    32	 100.0	    37	................................	ATCATAGGGATGATTTTGATCTCGATATTCGGGGGCG	
    325764	    32	 100.0	    35	................................	TGAGGAACGCAATTTAGACGACAGCCAAAAACGAG  	
    325831	    32	 100.0	    35	................................	TCCAATAAAGGCGGAGGAAGTGCGGGTGCAAGCCT  	
    325898	    32	 100.0	    34	................................	ATCGGATTAAGTTTTTTGCCATAACTTATGTCTC   	
    325964	    32	 100.0	    35	................................	CCGATGTGTGAATGATAAAAAATAAAAATTCGTTT  	
    326031	    32	 100.0	    34	................................	ATCTAATCGTTGCGCAAGTGAGCTGTGAGATAAG   	
    326097	    32	 100.0	    35	................................	AGAAAAGTCAGCGTAAAATCGCAATCTTCCGAAAA  	
    326164	    32	 100.0	    35	................................	ATGATCTAAAATGGCGAGAAGTGGAAAGAATAGAC  	
    326231	    32	 100.0	    37	................................	AGCTTGTTTGATGATGACACCAATCGAGCTGTTGCAG	
    326300	    32	 100.0	    35	................................	GATGTCTGGCAAGAATACGGCACATTTTTTCGTAT  	
    326367	    32	  81.2	    37	......A...T..G.T.....A..A.......	AGCTCATACTTTCGCATACGTTGGTTGGCAAGCTCGA	
    326436	    32	  78.1	     0	......AG..T..G.TA.A.............	|                                    	
==========	======	======	======	================================	=====================================	==================
        18	    32	  97.7	    35	GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC	                                     	       

# Left flank :   TTGATGAGATAAACTATGTTAATTCTGATTACTTACGACATTTCTTTTGACGATCCAAACGGGCAAGCGCGATTGCGCCGCATCGCAAAACATTGCTTAGATTACGGGGTTCGGGCACAATATTCGGTATTTGAATGCGATGTCACGCCTGATCAATGGGTTATGTTGAAAAACAAACTGTTGGAAACCTACGACTCTACATGTGACAGCCTGCGTTTTTACCATTTAGGAAGTAAGTGGCGTAATAAAGTGGAGCATCATGGGGCAAAACCGGCAGTGGATGTATTTAAAGATGTGCTTGTCATTTAGTTCGCTAACCTGGTGTTCTCATTAAAACCCTGATGGGATAGCGATCCTTATTTTCTTTAACAATTTGGATGAATTAATCTATTTGTATAACGACGATATGGCCGTTATACTTACTAAACTCCTTATCATAAAATCAGTTAGCGAAATACGGTGTTTAATACGCTGATTTTTCTTGCTTTTTTATGTAGGGG
# Right flank :  CGCTCACGCATTAAGCCAAGGGCAACCCTTACAACGCAGCTGTTTTAGCCAGCGTGCGTTAAAATAGTTCTGTTTTTTATTATTCAAATGTTATTTTTTTGTTAAATATATTTTACTTGAGTATAATGCTCAACATTATTCCTCACGGAAGAGAATCCGTAGAATAATGAGATTAATCGTAAATATAAGGAATAAAAATGGATTTCAATAGAATTATCGCTCACATGAATGATCATCACCAAGATGATATGGCTGCCCTTTGTAAAAAATTTGGTGGTGTAAATGAAATTACGGATGTGACATTAGTTAATGTAGATTTTGGTGGTTTAGATTTTAAATATAATGATGGCAAAACATTACGCGTAGAATTTCCGCAACAAGCTGACGAAGGTTCAATTAAACAAGCGATCATCAATCTTTGTGTAGAAAATAAACCAGTTGCAAATTACGATCGTATCAAAGCTAAAATTGATGAATTTCGTCAAGAGTTTAAAAGCTGT

# Questionable array : NO	 Score: 6.15
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [4,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GCAGCCGCCTCCGCGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-4.70,-4.40] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-13] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [65.0-46.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.55,0.37   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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