Array 1 34720-37946 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZS01000104.1 Fischerella thermalis WC1110 NODE_173_length_55060_cov_37.270412, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 34720 36 100.0 38 .................................... CCTGTGCAATCGCAGCCAGAGTGCCGGGATGGGCAGAA 34794 36 100.0 36 .................................... CCAAAATTCCGTTGCCCGGCTTTAGAGCAAAGGTGG 34866 36 100.0 40 .................................... CCGGCTATCTGCTGCTCTTGCTCTAGCACGATGGCTCGGA 34942 36 100.0 34 .................................... CTCGGCAATCTTTTCATCCGATTGCGCCACCAGC 35012 36 100.0 42 .................................... CGCCAAGACCTTGCTGCCGGACATTTACCGGTGTGTCGAGAT 35090 36 100.0 36 .................................... CTTCTCTTGGGAGAGGATACTGCACAGAACTTCCTA 35162 36 100.0 39 .................................... CATGTTATCCCTGTAGTACATTTGTGGTCTCCTAATTAA 35237 36 100.0 38 .................................... CCGCCTATATCATCAAGTCCCGGCAACTCGGCGTGACC 35311 36 100.0 37 .................................... CACTATCCACGCCGACATTAGATCGAAGAATCGGTTT 35384 36 100.0 35 .................................... CGGCGATCTTAATCAGGGATTTGACCAAACCACAC 35455 36 100.0 35 .................................... CTTAAGGGTGCTTGCCCTTTTCTTTATATTTTTAG 35526 36 100.0 34 .................................... CTTTCACAGTTGCTTGATTATGGCTTACAAAGAC 35596 36 100.0 39 .................................... CTTGGAGTTTCTGTGGAGTGTCTTGCGGCGTACTTACTC 35671 36 100.0 34 .................................... CGAAAAGCCGGATGGATTGCCTCCGCTCCAGGAC 35741 36 100.0 38 .................................... CCTTAGCCCCAATTCAGAGATGATCTGCCGTCCAGTGA 35815 36 100.0 44 .................................... CGCTTNNNNNNNNNNCCCCCATCCTTGCACCCAGATACTGGGTG 35895 36 100.0 36 .................................... CACTATTAATGAGATGTACGAAAACAACGTGACTCA 35967 36 100.0 35 .................................... CTTAGAAATCAATCCCCGTACCACTGCACTGTTTT 36038 36 100.0 34 .................................... CGTAAAATAATCCACCAAATAGAGATCCGAAGAG 36108 36 100.0 37 .................................... CCACTGAATGATGTATTAGACAATCTGGCAAACACCA 36181 36 100.0 37 .................................... CCTAGCTCATCATCGATAGCTACAAGTTTGTCTATGA 36254 36 100.0 35 .................................... CTGGAAATACCAACTAGGGCAATGTGCTTGTTGTA 36325 36 100.0 37 .................................... CTCCTCTTGGGCTTGTTCCCAAGTTATCTTACCTTCC 36398 36 100.0 38 .................................... CAACACTTTTACTCCAGGCACTACACTTAGTATCACGA 36472 36 100.0 37 .................................... CAACCTGGTTTCCTTTAGGTTTGAAGACCGGGCGTTG 36545 36 100.0 34 .................................... TTTCGATCCTTTGATTGTCGAGCTACTTGATCTC 36615 36 100.0 37 .................................... TAGTCGCCAATGCGCACAGGATAGCCTTGGACTGGCA 36688 36 100.0 36 .................................... TTTGGCGGTCGCCTTAGCCACCCTGAGCAATGACAA 36760 36 100.0 36 .................................... TGTTGTGATCTTGGGTCTGGAGGTTGCGGGAGCGGG 36832 36 100.0 33 .................................... TGGGGCTGGTTTCTGTGATCTACTGGCGCACGA 36901 36 100.0 44 .................................... TAGGTACTTAGCGACTCCGCTCTTGCCCACCCAGGGATGGGAGG 36981 36 100.0 35 .................................... TCCAATTGTCCCAACGAGCCAGTCGTTGACAAAGT 37052 36 100.0 37 .................................... TTGGCTACCCATATGCGCCGTAGCCATGAGCCATAGA 37125 36 100.0 37 .................................... TGAGGCTCTTGGAGTTTCTAGAGGTGTCGCCAAAGCC 37198 36 100.0 36 .................................... TTAAACCTGAGAAGCATCCTAGGGGCGCAAATGGAC 37270 36 100.0 34 .................................... TGGTGACATATCGTCCTATCGAGGGGATCTCGAC 37340 36 100.0 35 .................................... TAGACACAAGGTCTTTACCAAGCACCTTAGACCAG 37411 36 100.0 35 .................................... TGGCACCAGCCAAGTCGTAGCTGAGCAACTCAAAG 37482 36 100.0 36 .................................... TGGGACAAATCGTGAGACAGATTTACAGAAGTGTTT 37554 36 100.0 34 .................................... TCCTTCTTTATTAATGCCGTGAAGGGATTATCCG 37624 36 100.0 35 .................................... CATGTGGTGTTACATGTGCCATCAGGTGAGATGAC 37695 36 100.0 33 .................................... CGGCGCTATACCTGTGGACTTTCTCGGCGATCG 37764 36 100.0 34 .................................... CCTAGAAATTCAGCAGCATGTTGAGGTCGCCAAA 37834 36 100.0 41 .................................... CGCTTGGCGCAAGTGCTTTGACAGGTGCTTTAATCGGTGGA 37911 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 45 36 100.0 37 GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAA # Left flank : AGGTGGTGTGGAAGCAACGCCAAAAGTCTGGGATCTAGCCGCTGCTTGGGTAATAGTTAAGGCTGCGGGAGGAAGTTGGATCTCACTCAACTCAGAACCTTTTGCTTTATCTGCTGGTGTTGATTATAGCGATCGCTCTTTCCCCACTTTGGTTGTCAGTCGTCCAGAATTGGTGTCTACATTTAAGCCATATTTAGAAAATTTAAAGATTTGAACTTTGGCGTTCTCCAAGTTGCTTGGTTGACTTTATGGTGCAGATGGGTAGGTGTAGAAATCAGTTAGCCCATAAAAAGTACCTTAATCCCTGTAACAGCAATAGTTTCATCGATTAAGTAGCGAAAATAGGTCTGCACCAATAGCAAAACGCTTACTATACAAAGCTTTCAGGCTGAAATTTTGAGAGGCTCTCTTGTCACCTAATGGCTGAAATGATATTATGATGACAGGTTTGCACCACTGTACCTTGAAAACTAAATACTGTAAGGGTTTAAGTTTGTAGC # Right flank : AGTGGTGAGATTTACGTATAGCACTTTAAAATTAGGAGACTAAAAAAACCAAACTTATACGCAAAACCTTACTTAAATCTATAATTTAAAAATAAAATCAGCGATCGCCACCTCATCTTTACCTGTTATAGCTTCTTGGGGAGGACTCAGTAAAACAGATCGCTGCATTAATTTCTGACTTTCAAGACGACGTTCAACCCGGCTAGGAATTCCGTAACCGTAAACAATATGTCCTTGTCCAGCCAATACTGCGACTTGATAATCTGGATTAGCTTTGACAAACTTTGCAATTCCTTCTGCCATTGTTTCATCCCATAACACTTGCGCCAAAAAAAAGCGTTCAGCACCAGAACTATTACCGTGTCCAGCATTTTGATGCTGTTGAAAAGCTTGTAGTGATAACTGTTGATACTTTTGGTTATCAGTACGAATTTCTGAAAAAGGCGGAATAAATTTCCTTTCGGATGCAGTGAGACTTTCTAGACCTTGACGTGCAACTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATCAACTAAAATCCCTATCAGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.50,-6.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 1964-1348 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZS01000117.1 Fischerella thermalis WC1110 NODE_224_length_1922_cov_28.631113, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1963 37 100.0 36 ..................................... TAGCAAAGATTTCGATAATAGCCCTAAACTCAAGTG 1890 37 100.0 33 ..................................... GATGTCGAGCAGGAGATCAATCCTGCCCGCGTT 1820 37 100.0 34 ..................................... CCAGCGATCGGATTCAAAGCTCCGAAGGCGGAGA 1749 37 100.0 37 ..................................... ATTTACGGAGAGCGGTGTAGTGAAATCCCTCTCCCCG 1675 37 100.0 33 ..................................... CTTTTCTCTGCGCTTGAGCTTGGGCTTGGGTGC 1605 37 100.0 35 ..................................... ACAAGCCGACAAGTTCGTGGGTGCGATCGCGCTCC 1533 37 100.0 35 ..................................... CTTCGGAAAGCGATACGCGATCGCAGCGATCGCAC 1461 37 100.0 40 ..................................... AAGGCAATCGACGACATGGACTTTATTCGGCTCGGCTGTC 1384 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 9 37 100.0 36 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : | # Right flank : GGGATGCGCCCCCCTTCGCCGGCATCTATGCGNNNNNNNNNNTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCGCTATTCTTCGGGCAGAGAAATCTGCACACTTTTTGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCAGACGCTTCTCCATCCCGGAAGGGCACTGGTTTTCGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACGCATAGTAGTATTGGTGCCACTGATTTACTACTTCCAGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCGCCTACTGCTCGCTCTCTGCCAAATTGCGCAGGATTTGGTTGCAACTTCAATTAATCCCTATTAGGGATTGAAACCGATCGACTTCACCCATTCGGCATTTATCCCCGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [35.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 1 116259-115568 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZS01000121.1 Fischerella thermalis WC1110 NODE_293_length_270470_cov_37.788891, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 116258 37 100.0 36 ..................................... AAAGGGCAGGGTAGTTGTCACGCCATTGCGGGATGC 116185 37 100.0 34 ..................................... TTCTGAATCAATGATTTCATTTTTCGATAATTTT 116114 37 100.0 35 ..................................... TTTGTGACCCAGAGGTGCGATCGCGCGCGATCGCA 116042 37 100.0 40 ..................................... CTCGATATTCCTGGTCGAATTGTTAGTCTGTGTCGCATAG 115965 37 100.0 32 ..................................... AACATCAATTCCGAACCTAGCGCGATTGCTCA 115896 37 100.0 37 ..................................... GAGAGAGACCCATTTAACCGACTGCGATCGCGCCCAA 115822 37 100.0 38 ..................................... CATTGAATGTATTAACAGTGTGTTGTGTGGTTTGGTCA 115747 37 100.0 35 ..................................... GATGAAACCAACCTCACAGTCCAAAACCTGCACCC 115675 37 100.0 34 ..................................... AATGGACTGGAACCATTTGGCGACGATCTATTGA 115604 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 10 37 100.0 36 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : CCACCTGAAAATAATCGTCAACAGTGGCGGTTACGATACCACTCTACTCATTCAAGGGCCAGACAATAACACTATTCGCTGTGGTGATGATACAGGTAACAGTAAAGATGCCAGTATTGACGACAAAGACTGGAAAGCAGGAACTTATAAAGTTTGGGTAGCAACCTTTAACTCTCAAGTCAAAAAGAACTACACACTTTCTGTTGAGGAGTAGGGATCGGGGTGGCGAAAGGGGAAAGGGAAAAATACTAACCACTAACGACTAACTACTAACAACTAACAAACAACAACCAACAAATATTAAGATAGAGTGTAGCTTGTTTGGCAAAACAGGAGGTTAGTCAATAGCTAATATTTTGCTAACAATAGGTTATATATACCAACCAATGCTCATATAGTGGTATGGNNNNNNNNNNTCAAAAGCTCTTTAGATTTTCTTTACGAATCACCTCTTAGGGATTGAAACTCTCTTCGTCCTAGACCAACTGGAGCGTTCGCGG # Right flank : AAAAATCCATTAGATGTAACCAAACCACTCACAATGAGTAACTAAAAAATTACGTCGAGAACCAAGAACAACCAAAACAATGATTCGCTACGCTCAGTTTTATATTGGTCGCAATTCATCTGCCGTTAACTCTTTCGCCTTATATCCCGCCACTGATTCGGAGTACCGAATTCAGTGGGGGACGAGGGCGCGAAAGAGTTAAACATGAAATGCTCTACAACGCGATCGCCTCTAATACCAATTTAATGTGAAGCCGCACCAAATGACTAACCCTCCACTCTTGGCGTTCTTGGCTTCTTGGCGGTTTGTTTTTTAATATTCTGTACATCTTCATAAATAATTGCATTTCGTAAGTTCATAGCGAAATGTTTGCACAAAGACTCCGCGTCCCTCTGCGTTTCAAATCGCTACTTTTTCATGCAGTTTTCAGGCCTACTTCTATTTCTTCCGCCCGCCAAGGCGAATAGGCAACTACTTCCTAGATATATGCTTCTTCTAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 1 142011-145328 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZS01000122.1 Fischerella thermalis WC1110 NODE_321_length_146057_cov_37.705299, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 142011 37 100.0 32 ..................................... TGGGATATCCTTCTCAAAGCAGTTCTTCGGAA 142080 37 100.0 32 ..................................... CCAACTCCTCCTCCTCCGACGGGTGCGCAGAC 142149 37 100.0 44 ..................................... AATAGTTTTTGGAAGATTTTTGATCAGAGCTTCGCGATCGCTGG 142230 37 100.0 40 ..................................... GCGACCCACACATCCCTTATCCACTTGATTATCGCCACGA 142307 37 100.0 33 ..................................... CAATCGGCAGACTCTATCTTTGAAAATGTCCTT 142377 37 100.0 35 ..................................... GTAGTATTTGTGCCACTGGACGACCGTCTCCAGGA 142449 37 100.0 34 ..................................... AGATAGTTGCGGATGTGGCTCCTACCTGATGCCG 142520 37 100.0 34 ..................................... GCTGGTGACCACAAGGTATTGCCAGGCGTATTCG 142591 37 100.0 37 ..................................... GCAGCAATAGGGCTTGGGCACGGTCAGAGACTCGTCG 142665 37 100.0 36 ..................................... GGGACGCAGTATGGCGGCAGATTCAGCGATCCAGCG 142738 37 100.0 47 ..................................... CAATCNNNNNNNNNNACAGAAGCTCCAACTCATCCGGGCTGTCTTTG 142822 37 100.0 37 ..................................... TTCTCCCCATCCCAGCTAGCGATCGCGCTGCAAGATC 142896 37 100.0 37 ..................................... TTCCCTTGATGGGGAGGGGATTCAGGGATTCAGCCGT 142970 37 100.0 34 ..................................... CACCATTTCTATCGAAAACGGCAACACGATTACA 143041 37 100.0 34 ..................................... GACCTCCCTCCGACGATCGCTCCTAGTGCCCAGC 143112 37 100.0 36 ..................................... CTTCGGCTCGATTACTCTTGGATCGTATCTGCGCTG 143185 37 100.0 35 ..................................... CGGGACGAGCGGCAAAGCCACGCTGGCTGCCTTGG 143257 37 100.0 36 ..................................... TGAAGAGATCATCCGGCTCAAGGGGGCGGATTATCC 143330 37 100.0 35 ..................................... GACTTAAAGTGACCAGACAGCTAGGATGGGGAATG 143402 37 100.0 33 ..................................... CCTCCGAGGGAGGACAAAAACCTTTTCTCTCGC 143472 37 100.0 42 ..................................... GAAGATATCCTGAAAGGTTGCAGCGACAACCTTATTATTTAC 143551 37 100.0 43 ..................................... CTTCNNNNNNNNNNCTGATCCCGTCTTCGTGACGATGATGTCG 143631 37 100.0 34 ..................................... AGTACGCGATCGCGCCATACCCATACAAAAGGAG 143702 37 100.0 33 ..................................... TTCGCCCAGAACTTCGGGTAAAGTGCTGAGAAA 143772 37 100.0 35 ..................................... AATCAGTGATCGCAAATTCAGTTCGAGTAGAATCA 143844 37 100.0 34 ..................................... GCGGAGGAGGGAAGAATGCCTAAATACGATGTAG 143915 37 100.0 34 ..................................... CTCCCCACCCGGAATGCCGAGCTAAAACTCTGGG 143986 37 100.0 34 ..................................... TTAACAAAGCATCATCGATATCCAAAACAATGGA 144057 37 100.0 33 ..................................... TGCCAATATCTGCTGCCCATCGTATCCAGCCCA 144127 37 100.0 34 ..................................... AGTTCCCAGCGGCGCAAATCATTTTTGATAAGCT 144198 37 100.0 44 ..................................... CGGTGCGCATCCGGTGGATGAGCAATCGGAGAGCGAGATCGGAG 144279 37 100.0 36 ..................................... GGGGCGGATCAAGCGATCGCCGACCATATACCCCTT 144352 37 100.0 38 ..................................... CACGGCTTGATCCACGCCGTAGATCTGAGCCTGATCGA 144427 37 100.0 39 ..................................... GCTAGCTCCTGGCAGAGGCGAGGGAAGCTCTGCCTCCCC 144503 37 100.0 36 ..................................... ATGAGAAGGTAGCGAATACTCGCGGCGCGGCAGTAG 144576 37 100.0 32 ..................................... GGCTCTCTCCTACGAGCGAGGGCTTCGAGGTG 144645 37 100.0 35 ..................................... AAGCTGCTCTCTTCACCGTCAACGACGTGCATAGT 144717 37 100.0 34 ..................................... TTTGGATCAAATTCAAAATTGGGAGCCATCGCAT 144788 37 100.0 35 ..................................... CCTCGGCGACAATCCCTAGCTCTCCGAGCAGGGCA 144860 37 100.0 35 ..................................... GGCTAGCCTGGAGAAGCAGCTCAAGGAGGCACAGG 144932 37 100.0 36 ..................................... CGGACTCTTCTCTCACTCTGCCGCGATCGCCATCGA 145005 37 100.0 39 ..................................... ATGAAGTGAATATTTTCGTTAGTCTGCACAGTCCAGGTT 145081 37 100.0 34 ..................................... TGGACAGACTAGCCCTCGGTAGGAAGCCCTTAGG 145152 37 100.0 32 ..................................... GGAGTGCGATCGCGCCAAAAAGAAAGCCCGGA 145221 37 100.0 34 ..................................... CCACGCCCCCGCCCAATGACCCCTCCCGTGGAGA 145292 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================== ================== 46 37 100.0 36 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : CCCGAAGATAAACGTCGTACCAAAATCCACAATATTCTCAAGTCTTATGGACAGTGGATGCAGTATTCTGTATTTGAGTGCAACCTAACTGAAACTCAGTATGCTAAATTGAGGTCGCGGCTAGCAAAACTCATTAAACCTGATGAAGACAGCATCCGCTTCTATTTTCTTTGTGCTTGCTGTCAGGGTAAAATTGAGCGCATTGGTGGCGAAATGCCAATGGATACTACGGTGTTTTTTGCTTGATGATGGTGCAAACCAGTAGGTGTAGAAAAAAAGCAATCAATTTTTGGGGCTGAAATGCTGATTCTGTCTAAGTTAGAGACTGATTTGATGGCAAATGAGGTCTGCACCTTTTCTGTAAATCTTACCCTGACTAGATTTGAGCCATTTTATACTCGTTTGCTCTTGACAGTGCGATCGCTCAAACGCTATATTTAATCTAGGTCTGCACCACTGAACCTTGAAAACCAAATACAGCAAGGCTTCTGAATTGAGCC # Right flank : CCTGTCGGTGGTGCATTTGCCGACGAGAAAGACGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGTTGCGATCGCGAAGGGTGAATAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACTTAAAAAAATAGTTGCCAAGCCGCCAAAAACGATCAAGGAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACAATTCCTCTAAAAGACCTCCGATCTCAGAATCCGAGTTGCAACTTAAATTAATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 2 145660-146072 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZS01000122.1 Fischerella thermalis WC1110 NODE_321_length_146057_cov_37.705299, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 145660 37 100.0 40 ..................................... TTAAAAAAATAGTTGCCAAGCCGCCAAAAACGATCAAGGA 145737 37 100.0 35 ..................................... AATTCCTCTAAAAGACCTCCGATCTCAGAATCCGA 145809 37 100.0 36 ..................................... GCCAGGGAATTGAAGCGCGGACACATCAACGCTTAT 145882 37 100.0 35 ..................................... GTAATGCATCTTTTGTGTTTCCATTTTTCGACATT 145954 37 100.0 46 ..................................... CCCTCGCCGACCACCGCCAGATGGGCTGGCGGTACCGCGGACAGGA 146037 36 86.5 0 ...........................A.-C...TT. | ========== ====== ====== ====== ===================================== ============================================== ================== 6 37 97.8 39 GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Left flank : TTAAATTAATCCCTATTAGGGATTGAAACGGAGTGCGATCGCGCCAAAAAGAAAGCCCGGAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCCACGCCCCCGCCCAATGACCCCTCCCGTGGAGAGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAACCTGTCGGTGGTGCATTTGCCGACGAGAAAGACGTTGCAACTTAAATTAATCCCTATTAGGGATTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGTTGCGATCGCGAAGGGTGAATA # Right flank : GTAAAGTAAATATTAAATAGCCAATCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:0, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 26561-26741 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZS01000123.1 Fischerella thermalis WC1110 NODE_330_length_70752_cov_39.428185, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 26561 36 100.0 37 .................................... AAACCATCAACGACGGCAACACACCAAACGAAACCAC 26634 36 100.0 36 .................................... TCTGCGTGGGCCATGCTTTTGATTGGCTCCGCCTGT 26706 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 3 36 100.0 37 CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC # Left flank : TGTAATATCTAATTCTCGGCTATATCTAAACAATAGTTCTGGCGAACAGTTACTAAAGAACAGCTAGGATTAGCATCACCCTGCTCTGGAATTCTACTCATTCCCTGTAAGCTTTGCGGCTTTGCAATAAAGAAGCCTACAAAATAATTTTGTACTGTCATTAGTTAATTTAAAATGCGGATGAAAGGACTTGAACCTTCACGCCTCGCGGCACTAGAACCTAAATCTAGCGCGTCTGCCAATTCCGCCACATCCGCATCAGTTCCTTATCATAGCATAAAAGTTGTCTAGAGCAATAATTTTTACGAATTAAGAGCAACTACCGAAGTTCAGCCCAAATTCTGCAAATGCCTATTTTTGTGTTGTGAACTTCGGTTGTTTAGTACATAAGGGTTTTAGGCTTTTTGTTTGGAGGAATTGAGATGTTTTTGTCTGTAAATTATCTGAACTTCGGAAATCGGCTCTGGAAATCTTACTGGGTAACGGTTTAAAATAGGACT # Right flank : CTGAATGGAAACAATGGGAACCTAAATTACACCGACACGAGGTAATCGATGCTTGAATCCGCAGAGAATTTCCCAAGAAATTGTGTTTAGTTGATTTGCCCAATCATCAGCGGAGATTTGTTGTTTGCCATCTTGACCTAGTAGGGTGACTACCTCACCTTCTTGTATATCTGGTAAGGCACTGATATCTACCATCAGTTGATCCATTGTAATTGCGCCGATCTGTTGTACTCTTTGACCACGAATTAATACCTGCATTTTGTTGGAAAGATTGCGTGGAACACCATCGGCATAACCAATGCCAACAACAGCAATTCGCATTTCTTGCTTGGCAATAAATTGATGACTGTAACTCACACCAGTCCCAGCAGCAATGGTTTTGACTTGGGTGACTCTGGCCCTGACTTGCAAAACAGGTTTCAGGTTAATTTGCGATCGCAAATGTGTGGCTGGGTAAAGTCCGTAAATGAGTAAACCTGCACGCACCATATCATAGTGTA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCCACTCGCTGGGGAAACTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.50,-1.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 2899-7655 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZS01000128.1 Fischerella thermalis WC1110 NODE_459_length_9900_cov_33.238182, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 2899 37 100.0 35 ..................................... CCTTTTGGCTGCCACTCGACGAGGAATGGGAGAGA 2971 37 100.0 30 ..................................... GCTTTCTCGAAGAGTCCGCGCCTCGGATGG 3038 37 100.0 37 ..................................... CGAGGCATCTTCGCTGATGAAGCCGCTTTCTACGACT 3112 37 100.0 38 ..................................... CAGATTTCTCTCTGGGGAGAATACTGCACAGAACTTCC 3187 37 100.0 35 ..................................... TTTGCTCAGTCTAGCACAGAAAAGAAAAATGGCTC 3259 37 100.0 33 ..................................... GTCGAGGGGTGGGACTGCCTCGCCATAGGAATG 3329 37 100.0 40 ..................................... AGAAAGCTTTAATGGCGCTTAAAGCTTTAATGACGCTTAA 3406 37 100.0 33 ..................................... TAGCTTTGGAAGGCGTGGTGGGAGGGAGCATCA 3476 37 100.0 40 ..................................... GGCGGCGCATTCGTCGAAATGCAAGACAATTACCTCAAAA 3553 37 100.0 33 ..................................... GTCTGCTGGGGTCGATTCGGGGCGCATAGCCAA 3623 37 100.0 34 ..................................... ATCGAAATCTTCTCTAGGCATCATACTCTGATCC 3694 37 100.0 34 ..................................... ACAGCATCCGACGGAGCCACCCTGACCATCAGCC 3765 37 100.0 36 ..................................... ATTTTTGCTTTGATAAAGCTCTTGGTGTCCCAAGAG 3838 37 100.0 36 ..................................... TGCCGGACGAGCTGCCCGGAGCCATCGAATCCTAGC 3911 37 100.0 35 ..................................... AACTAAGGAGGTAGCCAAATGAAAAAAGATAAAAA 3983 37 100.0 41 ..................................... GNNNNNNNNNNGTAGTAAGCCAGTGCCTTATCCATAGTCCA 4061 37 100.0 35 ..................................... GAGTGAAGTAGCCGGACAACGAGTCCGGCTCTTTT 4133 37 100.0 35 ..................................... CTATGAGGCGGTTCTGGACTTGCCTGCGGATATTC 4205 37 100.0 38 ..................................... AAAGAAGGCTTCCACTGCCTCTGACAACTTTAAGCCGT 4280 37 100.0 36 ..................................... CTCCGAGATGACCAGGAGACCTTTCCCCTCTCTAAC 4353 37 100.0 36 ..................................... ATGGGTGCAATGGGGAGCGATCGCCACTAAGACGCG 4426 37 100.0 34 ..................................... CAAGGGGTGGGGACGATCCCGCAACCAACGAGCT 4497 37 100.0 33 ..................................... CTAGTATCCGTGAATATCAGATCACGTCCGGCA 4567 37 100.0 41 ..................................... GGCGTATTCGACCTCGACTGGGGCTTTCCAGTTCTTCGTGA 4645 37 100.0 37 ..................................... AATGCCGAAGTCGCCGCATTGAACCGAGCTTTGGAAG 4719 37 100.0 35 ..................................... CCAGTCTGGCGATCTTTTGGATGTAGTCTGGGTTG 4791 37 100.0 41 ..................................... AAACATCAGATCTGTCCCCGCTGCCGGGAGCGTAGCGGGGA 4869 37 100.0 33 ..................................... TATAGTGGATATAGTGGATATATCGGAGATATG 4939 37 100.0 43 ..................................... AAANNNNNNNNNNATTAAACAATCTCAACGCAGATATTATTGG 5019 37 100.0 33 ..................................... CATACCAGAGTCGCCCAGCCCGTCCCCTCTTAG 5089 37 100.0 34 ..................................... CCCAGGATCCCCGCCCAACTCCCCGCAAAGACGA 5160 37 100.0 34 ..................................... TCTTTTCTTTTGATAAAATCAAATTGATCACCAT 5231 37 100.0 33 ..................................... TGATAACCCCATCCTCATAGTAAACCTGATCAA 5301 37 100.0 33 ..................................... CGAGGGATTTGGGGGTGCTGCCGCTCGAAGAGT 5371 37 100.0 34 ..................................... GTGGCTGCTTGCTGACTCGCCGGCACAGCCAGAT 5442 37 100.0 34 ..................................... GAGATTAGCAGTATTCTGAGCGGTAGCACAATAA 5513 37 100.0 34 ..................................... ACTTTGATGGCGATGGGCAAGATGAATTGTTGTT 5584 37 100.0 40 ..................................... CTTGTTTTTGCGATTGCGTGAAAGTGTTCCACTCGGCGAT 5661 37 100.0 33 ..................................... CAAAATTATGCCAATCTCTTGCATTTTTGGATT 5731 37 100.0 34 ..................................... CTGAGCCAAGCCGCATACCACTCTCTGTACTATC 5802 37 100.0 34 ..................................... AGCCCACAGAACATCATTGAACCCATCGCTGTTC 5873 37 100.0 37 ..................................... AACTGGCGATCGCGGGCTGCACACTTTTTCCTATATA 5947 37 100.0 34 ..................................... GAGGATCAATGGAGCATGAAGGAGAAATCCAGTG 6018 37 100.0 32 ..................................... CGTGGATGATAGCCGCCACCACGCCTTCGAGC 6087 37 100.0 37 ..................................... GGATCTTCTTTTAATTCTCCTTCTGATTGTCCTACGC 6161 37 100.0 34 ..................................... AGGATCAGAAGGATCGAGAATTTGTCCAAGATTA 6232 37 100.0 33 ..................................... GGTTTTGGAATTTTTACTCCACTCCCAGACCAC 6302 37 100.0 35 ..................................... TTTCAGCTGCTTCAATCGCTTTGGCACGCTTGATT 6374 37 100.0 36 ..................................... ACTCGACTGGATTTAGCTCTTGACGATTTTTCCAAA 6447 37 100.0 33 ..................................... ATCGACCCCTTTACCTAGCGAGGGATCCCATTC 6517 37 100.0 41 ..................................... CGATACTTTTTTCGCTACGTTGGCGATCGCAGTCGCCCAGG 6595 37 100.0 37 ..................................... CCAAAGTGGCACGCGATTTATCTAATAGGTGGCACGC 6669 37 100.0 33 ..................................... GTAGAAGACTAGCGCGCTCGCGTCAAGAGATGG 6739 37 100.0 33 ..................................... GTGCTTCTGGGCGATGGGGTCGAGCGATCGCCC 6809 37 100.0 33 ..................................... CGCGGAGCGTGCCGGAGGCATTCGCTGCCGACT 6879 37 100.0 37 ..................................... GCGCCACAAAGGATGCGATCGCGCCCCAACTCCGAGT 6953 37 100.0 37 ..................................... CGCTATTGACTCATTGGGACTAGTGGGACATTTGTTG 7027 37 100.0 40 ..................................... ATACTCGCTCATTATTATGGAGGGGTTGTCGGTCACCGTG 7104 37 100.0 36 ..................................... TCCGAGGAGGTGCCAGTTGGTGGAACCCAGCCACGG 7177 37 100.0 35 ..................................... CTAGCTGATTAGGGTGCTCATCGAGCACCAGAACA 7249 37 100.0 34 ..................................... GAGATTCGATAAATCCAGCGATCGCTCTCCTTCG 7320 37 100.0 33 ..................................... ATGCCGCTTTCGGGGAGCACGCTGTGCTCCCTA 7390 37 100.0 40 ..................................... CAAATACGAGCAACGAGCACACTTGCCAGCGCTAACTTTG 7467 37 100.0 42 ..................................... CNNNNNNNNNNTGAGCAGAGTAATCCTCCTTCGTGCCAAATA 7546 37 100.0 36 ..................................... AGCGGCACTGCTGCGATATCTGCCGCCGGAATAATT 7619 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== =========================================== ================== 66 37 100.0 36 GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Left flank : CCTGACGGTACAGCAGCAAATATTCAACGCACAGACTCAATCAAAGATGGTGTGATTACAAACTCTTGGACGATCGCAACTGGTGATCCTATGGGTAAGCATAAAATAGAAGTTTATATTGGCGATCGCCGTATTGCTACTTTTGAGTTCGAGGTGGTTCCAGCTAAACGGCAAAAGCCAGCTCCAAAAGCGTAGTTACAAGTTTTGCTATAGTCGATAAATAAAGATTAATCTCTCTTCAGCTTAGAGTTGGTGCAAACCTGTAGGTGTTTAAAAAAAGCAGTCAAATTTAATGGCTACAAGCCCTACCTGTTATGGCTTTGAACCCTTTTACACTCAGATAGAGGTTTGCACCAATTCTGAAAGTCTTACCAGCAAAGCTTTTGACCTATTTTTTCATAATTCATCTTGACACCTCGATGGCTGAAAAGCTATATTTTGTCCAGGTCTGCACCACTGAACCTTGAAAACCATATACAGCAAAGCTCCTGAATCTAGCA # Right flank : TCCGTAGTATGCATTTGACAAATTAAAGCTTACTGCTTGAGATTAGAACTTAAAGGCGTTGCAGAGAAAGCGGGATGATTTTGTTTTATCTTTTAATTGACAAAAACTCAATCCTTGGCGCTCTTGGCGTCTTGGTGGTTCATTATATCACCGCTACGAACAGACCAGCAAGACTGAAACTAGCAGTGGTAATTGCAAAAGTTCCCGTTTGCAATAAATTAACTAAAGTTCCTCCGATGACTGCACCCACAATTCCTAACAGCATTGTTGCCAGGATACCACCACCTTGGTAACCAGGATAAATTGCTTTGGCGATCGCGCCAGCCAACAAACCTAATACAATCCAAGCAAGAAGATTCATGATTCGACTCCTTAATAGTTGCGAACAGAATATAGTTGAAGATAGAGTTTTAGAGATAATAAGGTTAGAGGTTTATAGACCCTAGACGTTCGCAAATTTCGACCGCTTTATCGAGGTTTTACCTCTCGTTATTTGCGAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTCAATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 25240-31304 **** Predicted by CRISPRDetect 2.4 *** >NZ_NGZS01000124.1 Fischerella thermalis WC1110 NODE_366_length_31292_cov_35.147770, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 25240 36 100.0 44 .................................... ACAGTATCTGCCTGGAATTCTGAGCGAAGAAGGGGAGTGTGAGG 25320 36 100.0 37 .................................... ACTCTCGCCGCGATCGGGCTGGGTGTTGGTAACGATG 25393 36 100.0 36 .................................... ACTGAATCAGGGATAACCATCGCAGGGCAGCCCGAC 25465 36 100.0 39 .................................... ATTTTTCATCTGTGAAGATCTCGATGATCATCTAGGAGT 25540 36 100.0 35 .................................... ACACGAATCAGCCATTACACAAGCACACCAAAAGC 25611 36 100.0 37 .................................... ACGATGATGGCAAATGGGTGCATCACTACGATGTTGG 25684 36 100.0 40 .................................... ACGGCTCTGGAGGCGAGCCAAGCCGAAGGGATATCGCATT 25760 36 100.0 36 .................................... ACCGCGTCATTCCGCTCCTCCGAGATGCCCTGAACC 25832 36 100.0 39 .................................... ACAAATCCAGGAAGAAGGGTAAACTTCTTACAGGATTTT 25907 36 100.0 38 .................................... AGGAGAGCCTCGCCACCAAGCATAGGGAGGAATTCGAG 25981 36 100.0 33 .................................... ACGCCCCCAAAAAGCGACTGCCCAGCGAATCGG 26050 36 100.0 34 .................................... ATTGAGATGATGGGAGCGGTTTCGGGCAGCATCT 26120 36 100.0 42 .................................... ATCGGGCAGCATCTCCGGTGGCTTGGAGTCGAGCAGCGGGGT 26198 36 100.0 33 .................................... ACGCTGTGGCGATCGCATTAAGGAGATTTACCG 26267 36 100.0 38 .................................... AATCTGACACCAACTCAAGAGGAGCTTATATTTGTCAA 26341 36 100.0 39 .................................... CGATGGTAGCCGCCACCACTCCCTCGACGAGGGATAGCC 26416 36 100.0 40 .................................... CCACGCTTCAGCCCATCTTCCTTGTAAATCACCACGGTTG 26492 36 100.0 34 .................................... CGCGTAGCCGCGTAGCGGCTTCTCGAAGAGTATG 26562 36 100.0 35 .................................... CTCTCCAATGCGTGGGGCGATCGCGCTTTGGACGC 26633 36 100.0 35 .................................... CTTTCTCTGATGGTTTTATCTGTCGCCTCCCAGAG 26704 36 100.0 40 .................................... CCTTCCTCAAGCCCAGAGGGAAGCTCGTATTCACCCTTCG 26780 36 100.0 36 .................................... CGCAAGGAATTCAGCAGTGTTCTTTCTGCTATCATT 26852 36 100.0 38 .................................... CAGGAGCATCCAAGATTTCCTAACCGACTCGATAGGGA 26926 36 100.0 38 .................................... CAAAAGGAATCATATCCCAATGAGGATCAGAAGGATCG 27000 36 100.0 40 .................................... CCGCCCCAGAATCCATGAACGAAATAAAGCCCGATCTGGA 27076 36 100.0 38 .................................... CAGGAATTCCATCTCCATCTATATCATAATCCGAGGAA 27150 36 100.0 35 .................................... CCCCATCGCGATGCTCCTCGAAGGATGGGAGATCG 27221 36 100.0 37 .................................... CCAGCTAGGATGGGGTGGCTTCGCGATCGCTACAGCG 27294 36 100.0 38 .................................... CGGACTGACGAGACCCAAAGTACAAGGATCCCCCATGA 27368 36 100.0 34 .................................... CCTTCTCCTCTGGCATTAATTGCATCTATAGCCT 27438 36 100.0 36 .................................... CTTTACGGCTTTGACAGCATGACCGGAGGGCTGGAA 27510 36 100.0 36 .................................... CTATTTACCGGGACATTGCGGTAAATAAACCGGAAC 27582 36 100.0 36 .................................... CCTCCTCGGTAGCACCTCCGACCATTTATCCGGACT 27654 36 100.0 43 .................................... CCCATAATCAATGCGCAATGGGCGGATGTGTATCGCCACGCTC 27733 36 100.0 42 .................................... CCGAATAGAAAAGCCGTGGTCACGAGATACCTCGTGGCACAC 27811 36 100.0 42 .................................... CCCGCCTAGCGTCCACGGTTGGTTGGCGGCTAAGCGCCCCAG 27889 36 100.0 36 .................................... CCTTCCTCGGACAAACAGCCCTGGGGATACAGATTC 27961 36 100.0 36 .................................... CCTGTGCAGAGTACGCTCACACCCCACCTCCATATC 28033 36 100.0 41 .................................... CGAGACGGAGACCCATCTGTTGCCCTGTCTCAGCGACTAGG 28110 36 100.0 40 .................................... CTAGACTGGATATAGTAGTGTTTGGAGCCAGATATGGAAA 28186 36 100.0 35 .................................... CGCAGGAGGTGCTACGGACATGGGATGATGGAGAG 28257 36 100.0 44 .................................... CCTCCCTAGGGCTGAGACCTCGTAGGGTCTATGTCTGGAGTTTG 28337 36 100.0 37 .................................... CCTCCCTAGGGAGGGGGATCTGTGGATCCCCTCCCCG 28410 36 100.0 37 .................................... CTCCGGGTGCCATTCGGTAGGGAGCTTGGTGGACTCG 28483 36 100.0 35 .................................... CGCTCTCTGGAGTGATCATTCACAGCGATCGCGTT 28554 36 100.0 35 .................................... CGATCCTGCCCGCGTTGCTGGCCCCATTCCCGATC 28625 36 100.0 38 .................................... CGCCAAACCCGGCACCGCCGAACCGAGACTCGCGCACT 28699 36 100.0 36 .................................... CATCCACCGAATGCGCACCGAACCGGGACGGATAAA 28771 36 100.0 37 .................................... CTGGATGCGCGATAAATCTTTATAGATGGGGGCTAGA 28844 36 100.0 40 .................................... CGCTCTCCGGATACGATTCGGTGCGCGATCGCTTCATATG 28920 36 100.0 40 .................................... CNNNNNNNNNNTACTCTGCCTATGCTCATGGATGCGTGTA 28996 36 100.0 35 .................................... CTTAGGCAGCTCTTTTAGAGGAGGCTGAATCCCTT 29067 36 100.0 41 .................................... CGTCTTTCCGTATCAGTTTCCCTCTCCAAACCCTCTTAATA 29144 36 100.0 39 .................................... CGAAGTGGCAGCACATGCCGTAGCTGTATCGGTCGCCAA 29219 36 100.0 40 .................................... CCGACGGGTGCTACTAAATCAAAATTGAATGAAGACATAT 29295 36 100.0 40 .................................... CGCGATTGAAGGCAACAGCGGTGGTGCTGTGCTGGCAGAA 29371 36 100.0 40 .................................... CTTTTTGAAAAATAAAACAAGCAACCAAATACATCGAAAA 29447 36 100.0 34 .................................... CATATCCGTACATCGGAGAATTCTTGAGACAAAA 29517 36 100.0 34 .................................... CCATTTATAAACTGCTGGTACTTAGCTTGCAAGA 29587 36 100.0 36 .................................... CATTCCTCTCCCCTCTCCCTATAGCTGCGATCGACA 29659 36 100.0 36 .................................... CGGTCTTAGGTATATCTTTTACTGCCACTGTGATTA 29731 36 100.0 38 .................................... CTTCCGCAGCCCGTAGAATTGGCTACAGACATAGCGAT 29805 36 100.0 41 .................................... CGCAATACCCTGCGATCGCGTCAAGCGCTCAACTTCTTGAA 29882 36 100.0 35 .................................... CATGTGAATAATGATTGGCGACACAGAATAAATGT 29953 36 100.0 37 .................................... CTGTGGATACCGATTCCGATACTTTTCTGCTAACTTT 30026 36 100.0 34 .................................... CCCGGAAAACCTAGCTGACCAAACAGCAAAAATC 30096 36 100.0 35 .................................... CGCTTCGATCTAACTTGGGCAGGAATAGCTATCTA 30167 36 100.0 37 .................................... CCTGTATTTACTTTCAGAGTAAGGGCACCATTATTTG 30240 36 100.0 34 .................................... CTCGCTGATATTACGCGATGTGCGAGAAGCGATC 30310 36 100.0 42 .................................... CAATGAGATTACGCTGCCAGAAGTAAATCCGGCATTTCGTAA 30388 36 100.0 41 .................................... CCTCGATGACGACAAAGGAATCTCTGCACTCTCTGATAACT 30465 36 100.0 35 .................................... CATTTAGGAATAACATCACTAATGCCAAAAAATCC 30536 36 100.0 35 .................................... CGCGGGGCATCGTAGCACTTCAGGCGAGCGATCGC 30607 36 97.2 36 ..............T..................... CTGCTAGACCCATCATCGCTCTTGAATTGAGTCAGA 30679 36 97.2 41 ..............T..................... TGTACGAAGTACGACATTCGATTTTAAGATTGGCATCTGAC 30756 36 97.2 43 ..............T..................... TGGGGCGCGAACCTATGCTTGCAGTCGTCCATCGCGGCGAAAT 30835 36 97.2 35 ..............T..................... TATTCAATCGGCACTGGAAAGTGCGGTTGCAAACG 30906 36 97.2 36 ..............T..................... TTTTAGATGAAGATTTAAACATAAAAGATACGATGT 30978 36 97.2 36 ..............T..................... CTTTCTGCATGTTCGGGAGAATGAATCCCCAAAGAC 31050 36 97.2 38 ..............T..................... CAAACTCAGCGACACTAAAAATACAGCAAATATACGCT 31124 36 97.2 38 ..............T..................... CACGGCACGGGCTTGACTGCCCCTTGGCTAAAAAAGAA 31198 36 97.2 36 ..............T..................... CTTCGAGTTTACTTGCCACCGCAGTTACGTTTTTTT 31270 35 80.6 0 ..............T..........-..CG...CTG | ========== ====== ====== ====== ==================================== ============================================ ================== 83 36 99.5 38 GTTGCAACTTAAATAAATCCCTATTAGGGATTGAAA # Left flank : AACAAGCATGATAATTTGTGGTTGAGCGTTTTTTTTGAACCACAAAGCCACAAAGACACGAAGAAAAATCGATTTTGAAGTTTTCCCAATGAAGGAAAGCGACGCCAGCAGAAAGTAAAAAAAACTGCAACAAGCATGATAATTTGTGGTTGAGCGTTTTTTTTGAACCACAAAGCCACAAAGACACGAAGAAAAATCGATTTTGAAGTCCTAGTGTTATGGCGATCGCCCTAGGCTACTTGGGCTTGATTGGTGCAAACCTGTAGGTGTTTTTTGGAGCAGGTGAATTTTAATCGCTGGAAGCCTTACCAGTTCTGCTTTTGAAGGCTTCTAAGTGCAAAAGGGGTTTGCGGCAATTGTGAAATGCTTGCCAGATAAGGTTTTGAGCCTATTTTTTCTTCTCCACCCTTGACATTCCGATGGCTGAAAAGCTATATTCACTTTAGGTCTGCACCACTGAACCTTGAAAATAAAATACAGCAATGCTTCTGGAGTGAGCA # Right flank : AATTTGGTCATGAATTATGTGTGCATACAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAATAAATCCCTATTAGGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.50,-6.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA //