Array 1 295411-295980 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSVM01000002.1 Escherichia coli strain UPEC_005 scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 295411 28 100.0 32 ............................ AGCAGCTTTCCAGCGAGCGCGGTTAACTCACT 295471 28 100.0 32 ............................ AAAACGGCGGGTTTTTTACGCGTGTGGCTGCA 295531 28 100.0 32 ............................ GTTAACCGTTTCACACTTAACACTATGAACCG 295591 28 100.0 32 ............................ CTACAGCAACTGATGCAACGGTAAGCGCGATC 295651 28 100.0 32 ............................ AGCAGCGGTGGCGAACCGCGCGTTGTTGATTT 295711 28 100.0 32 ............................ AGAACTCGAAATTTATCGCGGGACTTTTCAGC 295771 28 100.0 32 ............................ AGGCTGCTGGCGCTCTCGTTGTTAACGGCAGC 295831 28 100.0 32 ............................ GTTCCACGCGGATATCTGTAATTTCCAGCAAA 295891 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 295951 28 85.7 0 ....................A...C.CT | T,C [295971,295975] ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTCAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 305038-306747 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSVM01000002.1 Escherichia coli strain UPEC_005 scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 305038 28 100.0 32 ............................ AAGGCAAGTGATGGCGAAATTACCCGCGCAAT 305098 28 100.0 32 ............................ AAATTGGGGACACTTTCTTCTACCTCTTTTGT 305158 28 100.0 32 ............................ TCAATGCTGCTAAACGCGCACATGAAGAGTCA 305218 28 100.0 32 ............................ GCGCACGGCGTGGCGACAGAGAGCACGCCCGC 305278 28 100.0 32 ............................ AGTTCGGCATGAGCAGCTCCTCTGTAGTCAGA 305338 28 100.0 32 ............................ AGCCAAAATAATGCGTCGCTTTCTGACATTTT 305398 28 100.0 32 ............................ TCGAGCGTACCAGGTTTACTGTCGTCATATAC 305458 28 100.0 32 ............................ ACAGAACAGGCGAAAGAAAGGGTACGCAGTAA 305518 28 100.0 33 ............................ TGGATTCCAAACCGCCCACCAACAAAAACAGGT 305579 28 100.0 32 ............................ GATACGATCGAATTTAGTCACTGAATACCCCC 305639 28 100.0 32 ............................ GGGTTGCGCAATGGGCTGGCCGACGAACGCGG 305699 28 100.0 32 ............................ AGGTCGTAAACCCCATTTTCAAAACCAATCAG 305759 28 100.0 32 ............................ GCGCGCAGTGCCTGATAATCAATTTTGCTCAT 305819 28 100.0 32 ............................ TGTACGGCAGTCTATTAGCTATAGGAGCCTGA 305879 28 100.0 32 ............................ AGCGTTCGGTGAATATTTTCCGCCCGAGTCCA 305939 28 100.0 32 ............................ TGGGGATATGCGCGGGATTTGGCGGTGGTTTA 305999 28 100.0 32 ............................ GTAGAAGCTCACCATCAGCGCGTCTTTTTTGA 306059 28 100.0 32 ............................ ACATTTCCGCCGTTATGAATCGGTATTCCATA 306119 28 100.0 32 ............................ ATCCTGGCAGAACAACCAGTCAGCAGATCCCC 306179 28 100.0 32 ............................ TCATTCTGTACAGAAAGATCAACCATAATATT 306239 28 100.0 32 ............................ CGGGGAATGACACGCCGTTAATAGTGGAACTT 306299 28 100.0 32 ............................ GCTTGGGGAGTATTGGGAATCGCTCGGCGGGA 306359 28 100.0 33 ............................ GTTCGACGATTGAGTCCGCCGCTGTTGTTTGAT 306420 28 100.0 32 ............................ CGGCGGACCACTCATCATCGTATAAATCTTTC 306480 28 100.0 32 ............................ GCAAACGGAATTAGCAGCAGCATGATCAAAGA 306540 28 100.0 32 ............................ GACGAATGCCGCACACCAGGGCGTCTCGTCGT 306600 28 100.0 32 ............................ CTGGAGGCGCTCACACTCACGCGGAGTGAGAC 306660 28 100.0 32 ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG 306720 27 92.9 0 .......................-C... | T [306740] ========== ====== ====== ====== ============================ ================================= ================== 29 28 99.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCTTTTTATGCGCGCCATGCCCACCGCATACAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //