Array 1 57430-57218 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHJQ01000010.1 Escherichia sp. E14S1 14S1_10_consensus, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57429 29 100.0 32 ............................. TAAAGAAAGGCACCGATGAGGCGAATAGGTCC 57368 29 100.0 32 ............................. CGCTGGAAATATTATCCAGTCTGGAAATTAAT 57307 29 93.1 32 .......G.........A........... AGCGGCAAGTAAAGATTTCGCGGGCTGCAAAA 57246 29 82.8 0 ......................ACTC..A | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACAAAATCCTGCTGGCTGATGAGATCCACGCCTGTGACGCTTACATGTCGTGCATTCTTGAAGGGCTGATTGAGCGGCAGGCGCGTGGCGGAAACAGCGTCATTTTGCTTTCTGCCACGTTATCTCAACAGCAGCGTGACAAACTCGTCGCTGCCTTTGCGCGGGGTACAGAGGGCCAGCAAGAACCCCCGTTCCTGGAAAAGGATGATTACCCCTGGCTGACGCATGTCACGAAATCGGATGTGAATTCACACCGGGTAGCGACGCGCAAAGACGTTGAACGTAGCGTGAGCGTGGGTTGGCTCCATAGTGAACAAGAGTGTATTGCGCGTATCGAATCGGCGGTAAGTCAGGGGAAATGCATCGCCTGGATTCGGAATTCTGTCGATGACGCTATTAAGGTTTATCGTCAGTTACTTACCCGCGGTGTAATTCCTGCTTCCAGCCTTTCACTTTTTCATAGCCGCTTTGCTTTTAGCGATCGCCAGCGAATTGAAACG # Right flank : ACTCCCATTTTCAACCCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAACATTATCCGCATAACATCACGGCAGCGGCGTTCTATTCTTCCAGGAAGTGCCTTATCTATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCTCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTTGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTGGTGGCGGCAATTCCATGACTGCGGGCAATTGCCAGCGCCCGGTCGCGCGTTAATTTCCTTACTGCTTCAGGTGTTTTTACGCCACTGTTGAAATACAGCTTATCGCCAACAATCAGATTATCGAGGTTAATCACCAATAAAGTATTTTTCTTTTCGGTATCACTCATGCGCTTG # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 133076-134485 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHJQ01000003.1 Escherichia sp. E14S1 14S1_3_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 133076 28 100.0 32 ............................ CGTTAGTTTTGAGGGTTCAAAGCGGGGCGGGA 133136 28 100.0 32 ............................ AGCAGCGTTATCGAGCGCGCGGCGTTCAGATA 133196 28 100.0 32 ............................ AGATCGGTCGCGTCTTTGTAGTCCCTCGCTTT 133256 28 100.0 32 ............................ GTTGGATTTGTCAAACCCTTATGGGAATAAAT 133316 28 100.0 32 ............................ TCGTGGACAGCGGTTGGGGCCAATCCCCTTAC 133376 28 100.0 32 ............................ GCCACAAACCGGGCACGGCGGAGATGGCGGTA 133436 28 100.0 32 ............................ AGTAATAATTGAGCGTGTAGTTCTTAGCAACT 133496 28 100.0 32 ............................ TGGTGGTGCCGCTGAACAGTTATGACTGGAAC 133556 28 100.0 32 ............................ TCTTCCGCTAAGGCTGCTAAATCAGCCGCATC 133616 28 100.0 32 ............................ AAAGGGGCCCCCACGATTTAGCGTTTGACGAT 133676 28 100.0 32 ............................ TAATACGGATCACTATTCCAGAAAGTTTTTAT 133736 28 100.0 32 ............................ TTACGCGCAGAGCTACCCTCCTTTTCTGCGAC 133796 28 100.0 32 ............................ AGGAGCTCATGGATAAACAACAGGCGGCGCAG 133856 28 100.0 32 ............................ GAACGCAAATACTTTCCTGTTTGTGTTCCTGA 133916 28 100.0 32 ............................ TAAATTTGAGGGTGAGGGTAAGCGGGGTTTCC 133976 28 100.0 32 ............................ GCAAAGTCAGGGTGGTGCTGCCATGAATTTAT 134036 28 100.0 32 ............................ AGTTCGGAAACAAATTGCGGCACCGCGCCACC 134096 28 100.0 32 ............................ TGATGTTCGCCTGGGCTGGTTCGCTGAAAACC 134156 28 100.0 32 ............................ TGCTTGATGCGAAGACTATTACCAGCAATAGC 134216 28 100.0 32 ............................ TGTCGCAGGCGCTGTACTTGCTGTTGCAGAAG 134276 28 100.0 32 ............................ ATCGGTATCGCTCCGTTGGCACAGTGTTACTC 134336 28 100.0 32 ............................ TTCTGAGCGGGAAAACGCGCCCGCACTGGTGA 134396 28 100.0 33 ............................ CAAAATTAAAGGCGGCAAGCCAACATCTGTCAC 134457 28 92.9 0 ....................T...C... | C [134480] ========== ====== ====== ====== ============================ ================================= ================== 24 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGTTTATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTAAGCCAGGAAGCGCGTAACTGGCTGGCTGAGAAAGGTTACGACCGGGCGATGGGCGCACGTCCGATGGCTCGTGTGATTCAGGATAACCTGAAAAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGCTGGTGGATGGTGGCCAGGTGACAGTCGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCACAAAAGCATAAACCGGAAGCCGCGCATTAATCAGACTGTTAAGTAGGTTGGTGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTGTTTATAGGGTGGAGGAAGTTCAGACCCTTTTTTTGATGATGATGGTAAGTTGTTGATAATTAATGCTGTTGAAAGGTAAGAATAAAAAAGGGTTGCAGCAGGAAAATGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ATACGATGATGGCAGAAATTTAGCTGCGTTATGGCGTTCTCAACTCCGAACTATTAGCTGCAACACACAATAACAATCGTAATAATTGCGATAGAAATCAATTTCTCGCACAGAAATCAATGCTGTACTAATCCTAACTCCTTCAAATAAAAATAATCACAGGATGTGTTTATGTCTTCCAATTACCTTACTCCATCTGACCTCAAAACCATTCTCCACTCTAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGTGGGCGAGTGGAATATGTTACCAGTGAAGGTAAGGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGGATGGGAACATCCGTTACTCAGGCGGCGATGCGTGAATTTGCCCATGCCGGGGTGATGGTGGGCTTTTGCGGTACGGATGGCACGCCGCTGTATTCGGCAAATGAAGTTGATGTTGATGTCTTCTGGCTCAGTCCGCAAAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 148922-149609 **** Predicted by CRISPRDetect 2.4 *** >NZ_RHJQ01000003.1 Escherichia sp. E14S1 14S1_3_consensus, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 148922 28 100.0 32 ............................ AATCTAGTCCATTTTTCCGGAAAATGCAACGT 148982 28 100.0 32 ............................ CGGCACGCTGATAGCGAAAAAGGCCGACATAT 149042 28 100.0 32 ............................ TTGCGCGGCCGACCTTTCCCCCGCGTTCTCTG 149102 28 100.0 32 ............................ CATACCCGGCAAGCATCAATTATTTCCTGACG 149162 28 100.0 32 ............................ GGATTATGGACTCTAAGGATGCACCGATCGAC 149222 28 100.0 32 ............................ AAAAAAGTTTCCACTGGAAACCTGAGTGGAAA 149282 28 100.0 32 ............................ TCATATGAAACCATTATTACGAAAATCACATC 149342 28 100.0 32 ............................ CGGAAGCGCCTACGCGTGAGGCCAGGACCAAC 149402 28 100.0 32 ............................ CTTTATTGTGTCGTAGTAAAGTTGGGCCACTT 149462 28 92.9 32 .....A........G............. AGCTATGCAAATACGCCCTTGATAGCTGAACA 149522 28 100.0 32 ............................ GATACATAACCTACATTGGCCTCGGAGGATTC 149582 28 89.3 0 ....................T..TC... | ========== ====== ====== ====== ============================ ================================ ================== 12 28 98.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CTCACCCCGCCAGGACGGGTCACATGCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTCAGAATATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCTGACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATAGAGATTGATTCGTTTGGTTACGCAATGAACACGCAGTTTGCGTGACGGAGATTATGATCGTATGTGTTCTGTTCGATAGTTTATCAAAAGCTATGTATAAAATATGAGATTGAAGAAGTACCAAATCGACCCTTTTTTTAGGTTGAAATGTAACTCATTGATTTTGTTTATTTCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTACGACTGTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACACAACACTCCATCCTCCAATATTTATTCCCCGTAACTCCAAACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGTGCGCTAATTCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACTATAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //