Array 1 232975-235074 **** Predicted by CRISPRDetect 2.4 *** >NZ_WXEW01000003.1 Herbidospora solisilvae strain NEAU-GS84 Scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 232975 29 96.6 32 .........G................... TCTCTGGGCGAGAGTCTCTTCCAGGAACACCG 233036 29 96.6 32 .........G................... CTCATCGCGCACCCGCCTTGCGGGTCGCGGCC 233097 29 96.6 32 .........G................... GTGAACGTGCTGACGGGGTACTTTTCCCACGA 233158 29 96.6 32 .........G................... TCGGCATCGTCCTCACCCCCACCGGCTGGGAC 233219 29 96.6 32 .........G................... ACGACCGGGTTGTCGGGCTCGGGGATCACCCC 233280 29 96.6 32 .........G................... TTGGGCGTTCGGCAGGTCACCGACCCGCAGCC 233341 29 96.6 32 .........G................... CGGGTCCTGGCCCGCTGGTCCGGGTGGGGCTC 233402 29 96.6 32 .........G................... GCGCCCGAGGGATGGCGCGACGCGCTACACAA 233463 29 96.6 32 .........G................... TGCCGGCGGGCGGTCGCATTCACTCCACCCGC 233524 29 96.6 32 .........G................... GCCGTCGCCGCCGCCCTGTTCGCCATGGTCTG G [233546] 233586 29 96.6 32 .........G................... CTGCGGATCACGCTCGCCCCGGGCAGCGAGAT 233647 29 100.0 32 ............................. TCGAACAGCTCACGCTCGCGCCGGTCGCGGCC 233708 29 100.0 32 ............................. GGCAACCCGGTCCCCGTGGCTGGGATGGCGGT 233769 29 100.0 32 ............................. CGGGCGGCCGGGACGGCGGCGGATGCGTCGAG 233830 29 96.6 32 ............................A AGACAGAGTGGATACCCTCACAGTCGGCCGGG 233891 29 100.0 32 ............................. GACCTGCACTCCAAGGACGTCCGGATCCTCCG 233952 29 96.6 32 ............................C CCGTCACGCGAGCGACTACCTGCAGTCCCGAG 234013 28 96.6 32 .....-....................... GTCGGGCGCATCTTCGGGGTTGCGGACCGGCT 234073 28 96.6 32 .................-........... GGAACCCTCAGCACGCGGCTCACCCCCGACGA 234133 29 100.0 32 ............................. GGCGAGATGGTCGTGCCTGCCAAACAGGCCGA 234194 29 100.0 32 ............................. CGCGACCTGCTGGAGGCGGTCGCCGCCGCGTC 234255 29 100.0 32 ............................. CGATTTCAGGTCATGTGCGCACGGCAAGAGGC 234316 29 100.0 32 ............................. ACGCACAGTTGGCCGCCGTCCGGGGGGATCAG 234377 29 100.0 32 ............................. CGACAGAACTTCGCGGCGACATCGAGCGATGG 234438 29 100.0 32 ............................. GTCAGGCCGACGGCGTCCTGGTCTGCGCCACG C [234450] 234500 28 93.1 32 ...............C.-........... CTCGCGGCTATACGGCCGCCCGCCCGGCAGAT 234560 29 96.6 32 T............................ TCGCCGCCGCGGCGGACGTCGTCGTCGAGGGC 234621 29 93.1 32 .........G.........C......... GAGAGGAACGAAAAACATGGCAAAGAACAGCG 234682 28 96.6 32 ................-............ AGCGGACAGAGTCCGAGGTGCGAGAGATCCCC 234742 29 96.6 33 ............................T ACATACCAGTCGTCCCGGACGGGGGCACCGGCA 234804 29 100.0 32 ............................. ACCGCACCCCAGCCGCCGGAGAGCCTCCTGAC 234865 28 93.1 32 .....-...............A....... TATGGCGCGACCAACATGACCGATTCGGCCCC 234925 29 100.0 32 ............................. AGCTGGCCCGTGTAGTTGGGCAGGTTGAAGGT 234986 29 96.6 32 ...........................T. TACACCCCGATCCAGAACCGCGATCTGTTCGT 235047 28 86.2 0 .....-...G......G....A....... | ========== ====== ====== ====== ============================= ================================= ================== 35 29 97.2 32 CCAGTCCCCACGCCCGTGGGGGTGAACCG # Left flank : CACCGCCCACGCGCCGAGCGGAGCAGGTGATCAGCAGATACCCGGGAAGGCGCTGTCAGCAGCCACCAGGCATCACGAGGTGGGAGGCCATCGAAGGCCGCAGCGTCCCAAGACAAGGGCTGTTCAGCGGCCTGTCGAGATTCCCGGCAGACTACGGCCTCGGACGGTGGCGACGGCCCCATGAATGGAGCCGCCGTTACTTCTGCAGCGACGGGCTTTGAGGTCTCTAGTTGCTGCACACGACGCTCTGCCAGTCAGATACGGCATGCTTGGGCTTGTTCCGCTGATGCGAGTCGCGGAAAGTGAGGGCCTTCATGGCATTGGACTTCGGCGTCGACAGGCTGGCGCTGAGCTGGTCACCATGTGTGGCCTCGACCGCGTTGCTCAAGCGAGCGTCGGCTTCGCCAGTCGAGACAAGGTGATGATGTGAGGCGAACACCGCGCGAAACCCCGACATCGGTATCTGTGCAGGTCGTCAACGTTTGAGCAGCTCAGGAAGT # Right flank : GCGAGCGCACAGGCGATCGTGGACTTCCTCGCTGTGCGATAGTCCCGACCTGCGCCAATGCCGATGTCGCCATTTGTCGGCCTTTTTCATTTATCGCCCGAACTTGATTCTATAACCACCAATCAGTCGCATTCTCGTGCAGGCCGCTCTCTTTCGACATATGCTCTCGCCGAACACTAGCCGCCCCGCTTGATCCGAACACGAGGGTGATATGGCAGTCCCGCCAATCAGTGAGGACGTGGATCTTGATCTATGGGGAAAATCAAAGGGCCTCCTCAAGCCATATCCCCTGATCTGCCATCTCCTTGACACCTCGGCCATGACCTTCACCCTTTGGGATGACTACGTATCATCCGGCCTGCGGAAGTACATCACCACCTCCCTCGGTGTCGACGACGGTGGAGCGCGCAAACTTCTAGCCTTCTGGGCCGGCCTGCACGACATAGGCAAAGCTATCCCTTGCTTCCAGATGATGGATGAAAGCGCCTATGAGAATCTCC # Questionable array : NO Score: 5.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.46, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGTCCCCACGCCCGTGGGGGTGAACCG # Alternate repeat : CCAGTCCCCGCGCCCGTGGGGGTGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGCCCGTGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 244353-247412 **** Predicted by CRISPRDetect 2.4 *** >NZ_WXEW01000003.1 Herbidospora solisilvae strain NEAU-GS84 Scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================================================================================================================================== ================== 244353 29 100.0 32 ............................. CGATGCCGCCCGTCGTGGTCGTCACCGACGCC 244414 29 100.0 32 ............................. TGGATCCACGGGGACGACGAGAACAACGCGGC 244475 29 100.0 32 ............................. GGTGAGCGGGTGCTGGCCCTCATGAAGGCCGT 244536 29 100.0 32 ............................. TCCGCTTAGTCGGTGACAGGCGTGAGGTCCAG 244597 29 100.0 32 ............................. CTCACGCGCGCGCAGAAAAAGAGCGCATGGAG 244658 29 100.0 32 ............................. ATGGGCCTCACCTTCGACCGAGCCCAGACCAG 244719 29 100.0 32 ............................. GGGCCCGGCGCCGTGGTGTACGGCGGCGAGCC 244780 29 96.6 32 ............................C GCGCCGATCACGATGAACCCGGCCGCGCGGCC 244841 29 100.0 32 ............................. TCACGTGTTGGGAGCGTGCCACAGGTAGACGC 244902 29 100.0 32 ............................. GAGGCGTAGACGCGACGCCGCCAGATGAGTCC 244963 29 100.0 32 ............................. CCACCCCCGAACCTGAGGAAGAACCGCAGGTC 245024 29 100.0 32 ............................. TGCGCTGCGGAGATCGGCGCCCGATACCCCCG 245085 29 100.0 32 ............................. GCCGGGCTGCGCGACGTCCGCTGCTACCACCG 245146 29 100.0 32 ............................. GCGATCGTGAGCGGCATCAGCTGCGCCGCCCT 245207 29 100.0 32 ............................. GCAGTAATCCCGTAACGCAGTAGAGGAGAACG 245268 29 96.6 32 ..................A.......... CCGACGAGCTGAATGGGCGTGTACATGCCGAG 245329 29 96.6 32 ..A.......................... CTGGAGAACGGGAAGCTTCCGAGCCCGCCGGG 245390 29 100.0 32 ............................. CCGAACGGGACAGTCCAGAGGTGGTCACAGCG 245451 29 93.1 32 ..............T...A.......... CGTCGGGCGAGCCCGTCGACGTCGGAGTTGAA 245512 29 100.0 32 ............................. ACGGCTACGCCTGGTCTATTTCCAGGAGGTCC 245573 29 100.0 32 ............................. CCGCAAGACAAGACGCTCGACTCACTCATTCG 245634 29 96.6 32 ............T................ GTGGCCTACAGCTCGACCGCCCAGGAGGCCAC T [245647] 245696 29 96.6 32 .................A........... CAGCTTCGGTCGCCGGGGTCTCCATCCGCACC 245757 28 96.6 32 .....-....................... CGCGTCGGCGATCTGTTCGCCGCTCGACCGGT 245817 29 96.6 32 .........................G... TTGGCCGCGTCCACCGTCAGATACGGGTGACG 245878 29 96.6 32 .........................G... CGCCTGGTCATCAACCAGTGGCAGTCACACGG 245939 28 86.2 32 ..C......G.......-.......G... CGGACCATGCAGTCGTCGCCGCGCGCCCCGTC C [245944] 246000 29 100.0 32 ............................. CCGGTTCTTGGTCTCCAGGAACCGGTCGTTGA 246061 29 93.1 32 ...................T......T.. TCCTCGTCATGCTCCATGAGCGGGTAGCCGTC 246122 29 96.6 32 ........T.................... TACTACGTATCGTGGTACCTCAGTCGGTCAGG 246183 29 96.6 32 ..............T.............. ACCATTGTCGGGTCGTCCGCCCGGCGACGGCC 246244 29 79.3 32 GT.G.T..T....T............... GCCTCCGTCACGGCCCTCGACTCCTACCTTGG G [246259] 246306 29 86.2 33 GT.G.........T............... GGCAGGCGGTTCTCGACGTACGCCTCGGCGCGG 246368 27 82.8 21 T..-......-A.T............... CGGTAGCGGGTGTGGAGGACG Deletion [246416] 246416 29 79.3 30 T..G.........T....C.......G.T CCGTCATCCTGAAGTGAGGAAACGATGACA 246475 29 89.7 32 ..........T..A......A........ AACACGGCGGCGCAATACCTGTTGCCCCTTGA T,G [246478,246480] 246538 29 72.4 33 GT.G....T...G..A.T.A......... TTCTCGGAGGAGCTTGCCCGAGCCCTCGGCCCA 246600 28 82.8 31 GT.G............-A........... CTGATCAAGGGCGAGGGCCCGCGGACCTCGG 246659 29 82.8 32 GT.C......T..............G... TCCAGGTGTCGCTGCGTGATGGAGGCGTAGGT 246720 29 82.8 34 GT.C......T.............C.... CTGCCAGACCTGCCCGTTAACGTCACAGTGCTTC 246783 29 79.3 32 GT.G..G.G....T............... TAGCGGGGGAGCGTCCCGTCAACGTTCGGGAT 246844 29 75.9 31 GT.G.T.......T.....A..G...... ACGTACGCCTCGTAGCATCACGGGGGTAGGT 246904 29 75.9 150 GT.GCA.......T.....A......... TCAAGGCCAGTGCCGACCAAACGGTGCCGCGCCTGGTCCCCACGCTCGCGGGTGAACCAGCGGACAGAGCAGGCGGGCGGCGCCCCGGCGGTGTGGTCCCCACGCCCGGGGTGAACCGATCCTGTCCGTCATGCTCCACACCGGCCGGCC 247083 28 82.8 32 GT.TC-....................... CGCTCGTGATCCGGTCCATCTGCATCCCGAAC 247143 29 82.8 32 GT.G.....GT.................. CCCTTGCCGCGCTGCTGTCGGGTGCCGAGGTG 247204 29 89.7 90 ...C......G....C............. TTCCCCGACGCGCCGTAGAGGACGACGGCCCGGTGGTCCCCACGCCTGTGCGGGAACTGCGCGGCGGGCACCTCGGCAGAGGTCACAGCC 247323 29 82.8 32 GT.G....G..............T..... CCGGGGAGGTGGTTGACGACTTCGGCCAGGGC 247384 29 86.2 0 GT.G........................A | ========== ====== ====== ====== ============================= ====================================================================================================================================================== ================== 48 29 92.3 36 CCGATCCCCACGCCCGTGGGGGTGAACCG # Left flank : AGGCGACGGACATCGTGCAGCTATGGGATCCCGAACTCGGCGCCCTTCCCGGCGGGGTCAACTACGGTGACGACTCCGCTGCGGACGTGCCCTGGTAACCATCCTCACCGCGACAAGGCGACCACATGGCATCCATGATCGTCATCTCGACCACCGCCGTCCCCGACCACGTTCGCGGCGCCCTGTCCCGCTGGCTCATCGAGCCCGCACCTGGCCTGTACGTCGGAACGGTCTCGGGCCGCGTCCGGGATGAACTTTGGTCGGCCGTGAGCGGATGCGTCGGCGACGGGGCAGCAGTTTGCATAAGTCCTGCCGACAACGAGCAGGGCTTCACCATCCGCACGGCGGGCCAACGTAGACGCGTTCCGATGGACTTCGATGGACTCCAACTCATCAGGTTCCTGCCCAGCGAGCTCGGGTGATGACGTGAGGCCAGCATGGAGCAAAACCCCGACATTGGCGTCGGCGCAGGTCAGCGACGTTTGAGCAGGTCACGGAGT # Right flank : ATCGGCTGTCATCGTCGCGTACGGCCCCGGGCTGTGGTCCCCGGCCTGCGCGGCCAGGTAGCGGAAGACTCGCGACGGGTAGCGGCTGCACAGCGGCCCTGGTGATCGTGACGGCACTGCGACCCAAAGAGGCGCCCGCTGATCAAGAATTGCCCGTGTGGACCCAGCGATCTACGCACTGATCCTCACATACACCCAGACCAAGGACCCCGCCGACCTAGCCACCGTCCGCACCCGCGCAGAGGAGCTCGGCGACCCCCACGTGATCGAATTCGCGGACAACCTCCAGGCCATGGCCGACGGTAGGGAACGGCGAATCGCCACCCCAGCGGACCACGATCCGCTCCTGACCATGATCCCGGCCTTTCTCGCCAACGACGTCTCCGGCCTCCGCGACGCCGCCAGGGCATTCCCGCCCGACTCGGTCACCGGTAACTACCTCCGCTGCCTCCTGGCAGGGGATGTCAAGGGCCTGCACCGCGCGATCCGGGGCCTGCGCC # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGATCCCCACGCCCGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGATCCCCACGCGCGTGGGGGTGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-73] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //