Array 1 133800-134194 **** Predicted by CRISPRDetect 2.4 *** >NZ_SUNL02000012.1 Klebsiella pneumoniae strain AS009462 AS009462-illumina-1_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 133800 28 100.0 33 ............................ CGGCTCTTTTTTATCTCCTTCATCCTTCGCTAT 133861 28 100.0 33 ............................ TGATCGGCGTGCCGTTTGTTGGACCCGAAATAG 133922 28 100.0 33 ............................ CGTCATCAGCGCCTTGTTCCAGCGGCGACCACC 133983 28 100.0 33 ............................ TACCTCCCGGCGTCCGCGCCAGGGCGATCACGT 134044 28 100.0 33 ............................ CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG C [134053] 134106 28 92.9 33 ............T.T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 134167 28 89.3 0 ............T......A.......T | ========== ====== ====== ====== ============================ ================================= ================== 7 28 97.5 33 GTCTTCCCCACACGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : TCGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGACATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 142948-143890 **** Predicted by CRISPRDetect 2.4 *** >NZ_SUNL02000012.1 Klebsiella pneumoniae strain AS009462 AS009462-illumina-1_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 142948 28 100.0 33 ............................ CAGGTTCGTACCGGGGCCGTAGAGGTCTGTTTC 143009 28 100.0 33 ............................ TTTTGCACAAGTATAAAAAGTGTAATAAAAATC 143070 28 100.0 33 ............................ CACCACGATCTCTATCACCGACGCGCCGACTAC 143131 28 100.0 33 ............................ TAGCGGTGGTGGCCATCGATAACCTTCACGCCC 143192 28 100.0 33 ............................ CGCTGTATGCCCCCCATCCTTCGCAAGCACTAC 143253 28 100.0 33 ............................ CGATGACAACTTTGCCTACTTCGCTGCGCTGGC 143314 28 100.0 33 ............................ TGCGGGTGGATGACAATAACGCCTGGCGCGCCG 143375 28 100.0 33 ............................ TTCTTCATTAAGCCAGGCAGAGCCGCCATGAAT 143436 28 100.0 33 ............................ CCATTTCGATCTGGTCGTCGACGTCTTCGCGGT 143497 28 100.0 33 ............................ TTCGATGGGGTCCGACTATATCCGGATAGTAAA 143558 28 100.0 33 ............................ TCAGGGTGTCGAATTTCTTCTTTTTCCTGGTAT 143619 28 100.0 33 ............................ TCGCGAAATTCCCCGCTGCGACCTCTTATAAAT 143680 28 100.0 33 ............................ CCAAGCTGGTGCACGCGGGCAATTCTGGCGGCA 143741 28 100.0 33 ............................ TCAGCGGATCTGGCATACGTGCAAAAAATATCG 143802 28 100.0 33 ............................ CCTGTTAAGGATGACGCGGGGAAATGGGTTATC 143863 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 16 28 100.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTGCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGTTATCGTCTTCCCCACGCACGTGGGGGTGTTTCTCGATGGCGAGCTGCTGGTGAAAAAGTCGATACGTCTTCCCCACGCACGTGGGGGTGTTTCTCCAGGCCAGATCTGTTTGGGTTGGTGTCGAAGGTCTTCCCCACGCACGTGGGGGTGTTTCTTTACAAGAGATCCTCCACTCCCCACACCTGGTGTCTTCCCCACGCACGTGGGGGTGTTTCCTAATTCAATGGCGCTGAGAATGCGCGCATACGGTCTTCCCCACGCACGTGGGGGTGTTTCTTGAACCTCCCGCATCTGGTCAGGCAGGTTATCGTCTTCCCCACGCACGTGGGGGTGTTTCCAACCGGCACCGTGGCTGCAGGTGACGATTCCAGTCTTCCCCACGCACGTGGGGGTGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 143998-144696 **** Predicted by CRISPRDetect 2.4 *** >NZ_SUNL02000012.1 Klebsiella pneumoniae strain AS009462 AS009462-illumina-1_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 143998 28 100.0 33 ............................ TCGATGGCGAGCTGCTGGTGAAAAAGTCGATAC 144059 28 100.0 33 ............................ TCCAGGCCAGATCTGTTTGGGTTGGTGTCGAAG 144120 28 100.0 33 ............................ TTTACAAGAGATCCTCCACTCCCCACACCTGGT 144181 28 100.0 33 ............................ CTAATTCAATGGCGCTGAGAATGCGCGCATACG 144242 28 100.0 33 ............................ TTGAACCTCCCGCATCTGGTCAGGCAGGTTATC 144303 28 100.0 33 ............................ CAACCGGCACCGTGGCTGCAGGTGACGATTCCA 144364 28 100.0 33 ............................ CACATCGATGAGGACTTTTTTAAGTCTAATCTG 144425 28 100.0 33 ............................ TAATGGATCATCTATCACCCTGGCAAATATTTT 144486 28 100.0 33 ............................ TGAAGGTGAGCGCCAAAAGGAGTGGAAGCATGC 144547 28 100.0 33 ............................ CGGCTGCGTTATCCGGCAGCACGAACTGGACCT 144608 28 100.0 33 ............................ TGACCTTAGAGGCTTCACTCAGTGCCACTTTTT 144669 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 12 28 100.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TCTTCCCCACGCACGTGGGGGTGTTTCTTCGATGGGGTCCGACTATATCCGGATAGTAAAGTCTTCCCCACGCACGTGGGGGTGTTTCTCAGGGTGTCGAATTTCTTCTTTTTCCTGGTATGTCTTCCCCACGCACGTGGGGGTGTTTCTCGCGAAATTCCCCGCTGCGACCTCTTATAAATGTCTTCCCCACGCACGTGGGGGTGTTTCCCAAGCTGGTGCACGCGGGCAATTCTGGCGGCAGTCTTCCCCACGCACGTGGGGGTGTTTCTCAGCGGATCTGGCATACGTGCAAAAAATATCGGTCTTCCCCACGCACGTGGGGGTGTTTCCCTGTTAAGGATGACGCGGGGAAATGGGTTATCGTCTTCCCCACGCACGTGGGGGTGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGTTATC # Right flank : CTTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGAAAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATAAATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCTTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGTTACAAATTGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [6.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //