Array 1 14356-17446 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMBG01000002.1 Yersinia pseudotuberculosis strain 19-YE00106 19-YE00106_S5X_contig_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 14356 28 100.0 32 ............................ GGTGGCATGCCGGACTCAACGCCTCAGTAATG 14416 28 100.0 32 ............................ GCGATACTTTGCAAGCAATGCTCCGTGGTATC 14476 28 100.0 33 ............................ ATCGATACATTGGGATATGATTAAGATAATTAT 14537 28 100.0 32 ............................ GGGCATAGATATGCATCAAGGCGCGGGCCCTC 14597 28 100.0 32 ............................ AATAGTTAGAGTTGCAATGGCATTGGTCGGAG 14657 28 100.0 32 ............................ AATGTGCCAGCCATGCCGGCACAGCGTGGCAC 14717 28 100.0 32 ............................ ACGTCGCGCAACGCAAGCGAGCCAGCGCACCG 14777 28 100.0 32 ............................ GATGCCGGTGCTATCAATGCCGATGTGGGTAA 14837 28 100.0 32 ............................ ATACACGTATCGGAACTCTAATGGGGCACGAT 14897 28 100.0 32 ............................ CGCTGAATCCGTGCAGTTGGTCCCCGCGTTGT 14957 28 100.0 32 ............................ AAATGGCCTGGCGGCTTTGGGGTCGTGGTCTT 15017 28 100.0 32 ............................ ATATTCATGACAAAACCGGCGTCATTAACTAA 15077 28 100.0 32 ............................ TTGCTAACATTCGCACCATTAGAACTTTTGTT 15137 28 100.0 32 ............................ TCCGGTCAACGCCACGGGTTGCTACATAATTA 15197 28 100.0 33 ............................ TTATTTAATTGGAATGGGTGGGGCTTCATGGGC 15258 28 100.0 32 ............................ TATGTCGGATAGTAACGTCGAGGGGTTCCGAT 15318 28 100.0 32 ............................ TTGCACCGTTTCTAGATTTAATGCTTTTAATG 15378 28 100.0 32 ............................ ACGCTAATCTCTTGCATAGTATCACCGAAGGG 15438 28 100.0 32 ............................ AGCTTCTTCGTGACTCATCCCGCCGCCGACAT 15498 28 100.0 32 ............................ TAACTCTTGGCGGTCTTCACGGATAGCAAAAT 15558 28 100.0 32 ............................ AATAAGTATGCATAGCCTCAACCGCCAGTTCC 15618 28 100.0 32 ............................ AGCCCGGACGCGATAGCGATCAATTCCAGCTC 15678 28 100.0 32 ............................ TCCTCGCGACAGCGAGGAGGAGGAGGGAGAGC 15738 28 100.0 32 ............................ TTTGGTGTCTCAGAGATGACAATTAACAACTG 15798 28 100.0 32 ............................ TGAAATATGGCGTGATAAGCCGGAAGCGCAGG 15858 28 100.0 32 ............................ TCGAAGAGTGCATACAACGCGGTGATGATATG 15918 28 100.0 32 ............................ TAAATTTGAACAGGTAAATGGCCGGAGTTATG 15978 28 100.0 32 ............................ TGACTGCATGAAATCATCAAGTATTCCATCTA 16038 28 100.0 32 ............................ AACGATCACCAACTTTAAACATGTGAAATTTT 16098 28 100.0 32 ............................ CCGGAGCGGTACCTCGTTAGCCCGGAGGATAC 16158 28 100.0 32 ............................ AGAATTACAAACGGCTTATAACACAGCCATAG 16218 28 100.0 32 ............................ TGCAACTAAACAAGTTATTGAGGGATATATGG 16278 28 100.0 33 ............................ TGAGAACCAGATAAATCCTCACCTAAATTTGTT 16339 28 100.0 32 ............................ TATTCCCGCTAAGTTAGTCCCTGTATTTGCAA 16399 28 100.0 31 ............................ GCAACTAAAGAAGTTATAGAGTCATATATGG 16458 28 100.0 32 ............................ CTAGTGTAATAGCTAATAACACGTCTGGTATT 16518 28 100.0 32 ............................ AAGAACCCGTCAGGGATTGACAAGAAAGCAGC 16578 28 100.0 32 ............................ GAGATTAATTGTATCGTAATAACTAGCCACGT 16638 28 100.0 32 ............................ ATGAAGCGCCAGCGCCACCCATTAATAACGGT 16698 28 96.4 32 A........................... GCCTCGCTGATGGAGGAAAAGGTCGAAAAAAC 16758 28 100.0 32 ............................ CGCGTCTTGCGCATTCAGCCCGATCCCTTTCA 16818 28 100.0 32 ............................ GTTGATACCTTGTTTAAATTCAACGGTCTTTA 16878 28 100.0 32 ............................ GGATGCCATCGACTGCGAGTGAGCGTAAGCGC 16938 28 100.0 33 ............................ AATTAGTTCGCGAACATCACTCTCAGATAAAAT 16999 28 100.0 32 ............................ TTACAAAAGGTTGTCACTGATGACCGTCGAAT 17059 28 100.0 32 ............................ CAGGCGGGGCGGCCCGATACTGACCCGAGAAT 17119 28 100.0 32 ............................ ACCCCCCCATTTCTTGAAGTGCTGATAGTGGC 17179 28 100.0 32 ............................ TTCCATTCAACCGTAACGCCCTTTATATTAAC 17239 28 100.0 32 ............................ AGACACGCTAATGACTTCTATTACTTTATTTT 17299 28 100.0 32 ............................ CAGCAAGGAACATCGTCAGAAAAAACACTCTA 17359 28 100.0 32 ............................ GTTACGTGGCAAGTATCCGACCCGACGCTGGG 17419 27 85.7 0 ...................-A.A.C... | T [17443] ========== ====== ====== ====== ============================ ================================= ================== 52 28 99.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCACGGCGCTGGAGGGCGGCCAGAACTACACGGTGTAGCACCAGATGGATCATCACAGAAATCAATAATATTAGCCCAATCACCATCGTCAATGACATCACATTGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTATAAAGCATCAATCTGACTAAAAGGCCTTAGCCTAAAGGCTATAGGCGCAGGGGGTGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGATTGTTGCCCCGCGAGGGGGGAGACATCTTTATAGGCTGTGGTTTATGACATGGTTTGTGGAATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTACATTGTGGTTATCGGTGGTCTAAAAAAAGGGTTTTTTCCCCATTAGCGAAATAAGTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : ATTCTGGACCATGCGTTGATGCTATTTGGGGAGCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGAGAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAGGGTAAATAGCAGGTAGCATATCAAGATATACCCGTCATACTTCAAACTGCATGTATGTTGGCTGCGCTCAATTATCCCGGTCACTTACTGGTGTAAGTGCTTGGGGATTTACTCAGTTGCTGGCTTCCTGCAACTCGAATTACTTTGGGTATAGAGAGAGTTATTTTTTGGAAGAATATCTGCTAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCGCTAAGGAGTTTTTTGGCTATGGAAAACGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGTGGGCGAGTTGAATATGTCACCGATGAAGGTAAACAATCCCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 6451-7798 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMBG01000042.1 Yersinia pseudotuberculosis strain 19-YE00106 19-YE00106_S5X_contig_42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 6451 28 100.0 32 ............................ AACAAGAAACGAACCAAGGCCAGACTTTGCCC 6511 28 100.0 32 ............................ GTTAGTTGCTGCTAGCGTTCCATCAGCACCGA 6571 28 100.0 32 ............................ AGTGAGTTTTGAACCGGAACGACACCAGCATC 6631 28 100.0 32 ............................ ACTTGCGTTGTTCACTCATGTTAAATCCTCGC 6691 28 100.0 32 ............................ AAGGAAAATGCCATTAAGATAGTAACGAATAT 6751 28 100.0 32 ............................ ACATAATCATACTTCTTAGTTGGAATTTTACC 6811 28 100.0 32 ............................ GCTTACAATACGTTGATTATATCTATGACGGT 6871 28 100.0 32 ............................ CTTCAAAGGACATACCAGACTTGTGGCAAGAT 6931 28 100.0 32 ............................ TCGTAAATCATTAATTAACATTCGATCTATAT 6991 28 100.0 32 ............................ GTAGCTGCCGCGCTCCATCGTTCGATTGAATT 7051 28 100.0 32 ............................ CTACTCCGAAACTACAGAGTGTGATTACATTT 7111 28 100.0 32 ............................ GTGATGGGTAAAGTTACGGCATCAGGTGAGTA 7171 28 100.0 32 ............................ AATCTGACCAGACATAGATGTATGTGCCCAAC 7231 28 100.0 32 ............................ ATTGCGCGAAGTTGACCTACTGTGACGCCAAG 7291 28 100.0 32 ............................ GGTATCGACAAACAGGCACATATACAGTTGAT 7351 28 100.0 32 ............................ ACGAGCGCCGCAGCTACAGCGTTGAAGAGTTA 7411 28 100.0 32 ............................ TACGCAGCAGCAAGACCATTAGCAGCGGTTCT 7471 28 100.0 32 ............................ TATGACTTTTCATCGCAGCGATACACTCAGTT 7531 28 100.0 32 ............................ GATCTCGCCGTCCAATAGCTCGATAATTGAAC 7591 28 100.0 32 ............................ ATGTTTGCTGACGTGCCGATTGAATAGTCACC 7651 28 100.0 32 ............................ AACTTGAAACCTTCCCAGCAGTGACACTGGAT 7711 28 96.4 32 A........................... TTACACGCTGGACGGCCAGGGAGACGAGAGCT 7771 27 89.3 0 .....................CC.-... | T [7797] ========== ====== ====== ====== ============================ ================================ ================== 23 28 99.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GTTATAAGGCAAGCTCACGCTCATCATTAAGTTTATCAATCCGGCACAGTCTCTGTTGCCGGATTTTTTGTATTCAGAAAACCAGGCCAGAGCGTATTGTCGTGCGGCTACAATCTCAATCGTGATTAGGCTAGAAAAATGAATCGAGGTGATGAACTCCAGCAGGCAGACCCTCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCCTAATTCGCAATAAACGATACCGAGTAACCGTACCCATTAGCCATAGTATTACTTTTTTAGTTATTTAATTTGGCAGGCCAGAAACATGGGCCACGCCACCCCCCCTCCTCAGAAGAGTAATCATTAGGGTTACGTCCCCCCCGATTCTTGTGACCCTCTTTTTTTCACTATGACTAACGTATTGATTTTTATGCTACTCAGGTATTTCACTAAAAAAAGGGTTTTTACGCATTTTGCGCCATTGCTCATTGATAAACATCGGGTTATCCGTATTATCTTACT # Right flank : ATCTCAGCTCTCTGGCGGCGTTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGCTCAGGGCTAAGCGCTTCACGGCGATGCTGTAACCAACGCTGTTGTTCACTGTTATTCAAGGTATTTGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCTGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCAGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGTAACCGCGAATGGCTCAGCTTGTGCAAACAGCGCGACCACTTTTTCACGCACCTGCGGGTTTTGCCGCAACAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //