Array 1 5633-4944 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJT01000007.1 Gallibacterium salpingitidis strain 19987/2 Salp contig000006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5632 28 82.1 32 ..AC......AT.A.............. AATCACTGTTGGTGCGACGAATTACACACTTA 5572 28 100.0 32 ............................ ACTTTCGCCTAATATCAATGTAGCAATACTCA 5512 28 100.0 33 ............................ CATTATTTTTCTTTCTTGGCTTTTTACTACTAG 5451 28 100.0 32 ............................ ATTTCTAAGCATAACAGGTTTACCTGATAGTG 5391 28 100.0 32 ............................ ACGAACGTACTAGGCGGACAGTACAATGAGAC 5331 28 100.0 32 ............................ CTAGCGTTCCCCCTTGGTTAGAGTCCGAATAA 5271 28 100.0 32 ............................ ATGTAGATCTTGATGTAGCTTTCTCGGTACTC 5211 28 100.0 32 ............................ TGGTAACTTTTCCCCACCGGCATAAACCCATT 5151 28 100.0 32 ............................ TCATTAAAACATCCTAAATGTTTAATGGCGAA 5091 28 100.0 32 ............................ ATAATGAATACCATGCAAATCAATAGATGTTT 5031 28 100.0 32 ............................ TCCATGATGTGAGCAGGTACCTCTTCCTGTGC 4971 28 92.9 0 ..........................CC | ========== ====== ====== ====== ============================ ================================= ================== 12 28 97.9 32 CTTTACTGCCGCATAGGCAGCTTAGAAA # Left flank : GTCTGCAATATTCACACAAACCATATTTTTGACGGCATTTTGCATATCACGCAACAAAAGACTAAAGCAAAAGTCAGAATAAAATTAGTTGGCCAGCTCGCAGACATTATAACAAGGCGCATGGAAACTCACCCAGGCTATCTATTTCTACATTCTAGAGGGGGTAAATTAAGGAGAACAACGCTTAGTGAAAGATTTCGCAATCTTCGTAATGTAGCTTTGGAAAAATACCCTGAGTTGGCAGACGAAATTGCCGAGTTTCAATTTCGAGATTTACGTGCAAAGGCGGGTACTGATACTGCTCTTGCTTTCACAGATGAATCTGCACAAAAACAACTCGGTCATAAGTCTGTACGTATGACACAACGTTACATCCGTAAGACTCGTGTAGTCAATCCAACTAAATAGAGTTTCGGAAAAATGCACTTTTTTTCGGAACTCTCACTTTTCTAAAAACAGATATTTTCTTTTAAATTCAATATTTTATCTTACATCAAAAA # Right flank : AAAATCTCTTTTAAACGTAATTTAAACGTGATTTAAAGCTACTTTAAATTGAGATTATTATTCTCTTTATCTGTATGTACCTCGCCGAAAAAAACCACTATTGCTCTTCCTGTCGCCAAAAGCCTAAAAACTCATTAAATTGCCAAACTGCTTCTGTTTGCTCATCTTTTCTTAATGAAACGGTTGCATAAGATAACGCTGTTTGTTCAATATCTTTTAACTTTAATGCTTCTGTTAGCTCATCCAATGCTGTTGTTAAGGAAAAAACAAGCCATGGCTTAATCAGTGAATTTTGATTTTTAATCGGTTGATACTGAAACCTATGCCACTCTTTATTACAAGAGAATAAATTCTGATGTGCTTTTTCACTATACGCAAAGGCATAACCCCACGAACTTTCATCATCAGGTAAACAGACAAAATCTTCCATTTTTTGTGAGGCCCGAAACGGCGTAGTCAACGTATAGTGTGCAGCTAATTTAGCATTATCACTACGCCAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTTACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 52615-52346 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJT01000007.1 Gallibacterium salpingitidis strain 19987/2 Salp contig000006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 52614 28 100.0 32 ............................ ATATTCATCAGCAATATTTTTGGCTGAATCAA 52554 28 100.0 32 ............................ TTTGAATCAAAAGGGCTTTAATAGATGAAAAA 52494 28 100.0 32 ............................ ATTTAAAAAATTTAGCCATTCCAACCCTCATT 52434 28 100.0 32 ............................ TTGATGGAGATAAACAAAGTAATGATAAAACA 52374 28 92.9 0 .....................A....C. | T [52350] ========== ====== ====== ====== ============================ ================================ ================== 5 28 98.6 32 CTTTACTGCCGCATAGGCAGCTTAGAAA # Left flank : TTTCTTTCTTTTCAGCTTGAACCTTTACGCAATTATTTTCTAATTAAGGAAATCGCTCTTGTTCCTGAACAAGCTACTGCAGTTCGTTTTCAACGCATACAGCATAAAGGAAATAGTGCCTTACGTCGTGCAGAAAGACGTATGAGAGAAAGAGGTAATTTTTCTGCTGATATTCTAGAAAATATGCGTCTAAAACAGCAAGAAACACAACTTTATCCACATGTCTTTCTTAAAAGCGCTAGTACACGCCAGAACAAGATGTTACTTGAGATTAAGCGTGTTGTGTGCCAAAAACACAACGAGGGGCAATTTACTGGATATGGGCTAAGTAAAGACGCAATTGCAACGATACCTCATTTTTAATTTGAAACCCTTTTTTTACAGGATAAATATATTCATTTAAAATCAATGAGTTATATTTATAGCTAAAAAAAGGGTATTTTTATTCAAACTGTTCTTTAATAGCGTATCTACCTAATCTAAAGAGAATATAATCTCTA # Right flank : TAAATCCGCATCAGAAAAGGCTTTATCGCAATTTTACGTTCCGAAACTCTTTCTTATCTTAAAATTATTTTAACTTGTAAAACAATAAGATAAGATTTTATTTCGGAACAGCTTTTAGAATATAAAATGCTAAATTTAATAATGTGACAGGGTTAAAAAATAGAGTTATCCAGTCTCTTTATGCTTGTTAGTAGGAATGATAAAATATTTGATAATATAACAACAAAAAATGTAACAAATGAATTTAAGTTGCTTTCATAACTTAGAAATATAAGTTTCATAAGACAAAAAACAATTTCTTATTGTGACCAAATAATTCCAAACAAATTAAATGAGAAGTAATATGAATTATATAAGCTTTTTTAGCGGTGCTTTAGGACTAGACCTAGGATTGGAAAAACAGGGTTAACCCCTTTGATGTATTGTGAAAACAATAAATATTGTCGTCAGACAATTGAGTTAAATAGACCAGATATCCCTTTAATTGATGATATAAAAAA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched CTTTACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.10,-8.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [65.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 76887-76496 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJT01000007.1 Gallibacterium salpingitidis strain 19987/2 Salp contig000006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 76886 28 100.0 32 ............................ TGTCTTTTTTCCTCCAAAATAGTTATGTAAAC 76826 28 100.0 32 ............................ TATTACCACAAGCGGTCAGTATTGCAGATAAA 76766 28 100.0 32 ............................ ACACTTAATCTGCTTAACATCGACAAATAAAT 76706 28 100.0 32 ............................ AGATGATTTTTCTTTTGTTTGTTTTACTCTCT 76646 28 100.0 32 ............................ TTAAAACCCCAAAAAAACAAAAATCATCTAAA 76586 26 89.3 35 ....................--..T... TATAAAGAAAAAGCCCCGATGATTCGGGGCTTTTT 76525 28 78.6 0 GA.C...A..A..T.............. | C,G [76512,76520] ========== ====== ====== ====== ============================ =================================== ================== 7 28 95.4 33 CTTTACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAAGATCAACAAGTTGTTTTAGGCCTTGTTACCTCAAAAAGCGGTGAATTAGAAGATAAAAATGCCATTATTGAACGTATTAAAGAGGCTGCTCAATATGTTGATATCAATCAGCTTTGCTTAAGTCCACAATGTGGTTTTGCTTCAACTGAAGAAGGCAATGTATTAACTGAAGAGCAACAATGGAAAAAACTCGAATTTATTCGTGAAATCAGCGAAGAAGTTTGGGGCAAATAGTTAATCCAAATTTATTTTCAATTTTTCACTTCTTAAAGCTATATCTTAATTAAGGTATAGCTTTTTTATCGTTCTCAGCCTAAGCATCTTATTTTGTCCTTTATCTATCTTTTAGCATTATTTCTATTTCATACCCTATTTTTTAGACTATATATAACTTTTTGATTTAAAAGAGATTTATATCATTGACAAAAAAAGGGGTAACCATTACCGTATAAACGCTATCCCTTGTTGTTACTAGGATAAAGCTCTTTAACAATCTA # Right flank : ATAATTAAATTATTTTTCAACTGTTGTTTGGTGTTGACCACTTACAGAAACTTCAACACGACGATCTGGTGCTAAGCAAGCGATTAATGCTTTACGACCTTTAACTGCATCACAAGTGTTGCCAGTTACAGGGTTTGCTTTACCATAGCCAACTGCTTTAATTACATCTGGAGAAACAGATTTAGAAACTAAGTAGTTAGCAACAGTGTTAGCACGATCTTGAGAAAGTTTTAAGTTATATTTGTCAGAACCGATACGGTCTGTATAACCAGCAACTTCAACTGATGATAAGTTACCAACTTTAGAAATTTCTTGTTGTAAGTTATCTAATGATTGTGCTGCTTCTGGTTTTAAGTTTGCTTTACCGAAAGCAAATAATACATCAGAGCTTAATGCAAATTTCTTGTTAACAACTTCAACTGCTGGAGCTGGAGCTTGTTGACCTTGACCAAAACGGTAAGAAAGACCTAAAGATACAGAACCAATGCTTGGGCTATATG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 145-414 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJT01000016.1 Gallibacterium salpingitidis strain 19987/2 Salp contig000015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================= ================== 145 31 100.0 29 ............................... ACCAAATTTGATGTTCTTTCCGCTTCTTA 205 31 100.0 29 ............................... TGTTATCTGGCATTTTGAGTAAGGCTTTA 265 31 100.0 29 ............................... ATTTGGCGACTTTTTAAAATATTGCGAAT 325 31 93.5 28 CC............................. TCATGGGAACGCTACATTCACCCATGTG 384 30 93.5 0 ..........................-...G | G [386] ========== ====== ====== ====== =============================== ============================= ================== 5 31 97.4 29 AAGTTTACCGTCGCATAGATGGCTTAGAAAA # Left flank : GATTGTAAATTCAAGCTCTTTTTTAGTCCAAAAAAATAACTTATTGATTTAACAATATTTTTTATTATCTTAGCAAAAATAGGGTGAATGGCTAAATTTTTATGTCATAGCTTGCTATTTCAGGAATGACGATATATTTTAATGA # Right flank : GCAACAATCCGCATTAAATATGCGGATTGTTGTTTAATCACTATGCTCGTTTCACACCTAAAATAATATGTGAAGCTTTAATGATTACATTTACCGCTGAACCAACCGTTAAACCTAATGCGTCAGTACTAGTATTAGTAATAATCGCAACGATTTCATTGCCACCAGCAGTTTTTACAATAACTTCTGAATTCACTGCACCACGAGCTACTGCAATTACATTACCGTTAAGTTGGTTACGTGCAGACAATACTAATGATGTGTCTGTTGATAAAATCACTGATGATGCCTTAAAAATAGCAACAACCTCGGCGCCCTCTGTTAACTGTAAATTCTTCGTACTTTCAGAAGTAATTACACTAGTTAATTTTTCGCCACTTGCCAATAACAACTCAATTGCATCATTTACTGCACCTTGCTTAATGGATTTTACAGTTGCTTTTAACTGATTTCTTGCACTTATTGTCATTTGTTATTCCTCTATACAGAATGAACTTTAT # Questionable array : NO Score: 2.93 # Score Detail : 1:0, 2:0, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAGTTTACCGTCGCATAGATGGCTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 2 5299-6106 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJT01000016.1 Gallibacterium salpingitidis strain 19987/2 Salp contig000015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5299 28 100.0 32 ............................ GCCACGATCTTCAAGATAAATAAGCCCCGGAT 5359 28 100.0 32 ............................ AATTTCCTTCAATTTTTGGATTGAGATTTCAT 5419 28 100.0 32 ............................ AACCTGGAGTTGCGTTATCGCCAACATCCTTA 5479 28 100.0 32 ............................ TTTGAATCTATCGACCCACTCTAACTTGTAAA 5539 28 100.0 32 ............................ AGGCGAAACTTCTAGAGCGATTTGTGCTCCAT 5599 28 100.0 32 ............................ AAATGCACCAGATGAGGCATACGGTCAGATTA 5659 28 100.0 33 ............................ TAAATTTTGCAAGATTAGAAGGATTTGCGGCAG 5720 27 96.4 32 ............-............... AAAATGGCTATCTTCAACCCCTGAAGCCTCGT 5779 28 100.0 32 ............................ AAGGGGGAATCTGTTTGTGCAATCAAATGCAA 5839 28 100.0 32 ............................ ACTGAATAGAGGTAATTATGGGCGTTCGCAAA 5899 28 100.0 32 ............................ TATACCGATATAGCCAATCAATCGTGAGATGT 5959 28 100.0 32 ............................ CGACAATTTTTTCGAAAAAATTAACAGTAATG 6019 28 100.0 32 ............................ GAGATTATCATGCTCAGTGAACTCAACCTCAA 6079 28 96.4 0 .................C.......... | ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.5 32 GTTTACTGCCGCATAGGTAGCTTAGAAA # Left flank : TGGTATTGGCGGTATCGCTGGTGCAGTATTAACAGGTGTATTCGTATCAACAGATATTACTGGCGGTGGAGCAAGCGTACTTGCCCAAGTAGAAAGTGTTGTAATTACTTTAGTTTATAGTAGTGTGATGTCTTTCTTAATCCTATGGGTAATGAGTAAATTCACTGATATTAGAGTTTCATCTGATGAAGAACGCCAAGGTCTTGACTTAATCTCTCATGGTGAACGTCTAGAATAATCAGGAATATTAAATAATTTAATTAAGCATAGTAGTTGTTATTGACAATCTTTCTGCACCGTAAAAGTTGGCTTCAACTGGAAGGTGCAGTTTTTTTATTCTTAATGAGTAATCTCTCTTTCTTATCAATTACCCTTATTTTTTCTCTTAATATAACCAATTGATTTTCCATTAATTTTATTAGTTTGACAGAAAAAGGGTTAACAACTAAATTTTTACTGTGATCCTTGTTATTTAAGGGATTACGGTAATTTATGGTCTA # Right flank : ATAGTACGATATATGAAAATTAATATATTTTGTGGTTTCGTCCCGCCAAACATATTATCGCCTCCACTTAGGGAGGCAATTTTTAACAGACAAAATTAGATTTATTTCTCAGATAACATATCTGCTGCCATATGTTCTACTTCTTTCAACACAAAATCTGGCGCTTCGTAATCTTTCGGTAAGTCATCTAATTTCTTCAATGGTTTCTTACCTTCACGTTTAAATCTAGCATTCAAATCTTTCAAACGTTTTGCGTCATCTTTATCATTTTCAGCTTTTCTTTCATCTAAATTTAATGATAAGAATTTACGCTCATTACGTTGATCACGTGTTGCAATATCTTGATTTAATACAATAAATTCTGGATCGTTAGCAACACGTTCTTGATGACGCGTTGTTAAAGTTTTAATCATTGAAGATAAATCGCTCACTTTCTTATAAGAAGCTTCTGGAATTTTATCCCATACTAAAGCATTATCTTCTTTACTTTCACCATATTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGCATAGGTAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTTACTGCCGCATAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 2906-3203 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJT01000089.1 Gallibacterium salpingitidis strain 19987/2 Salp contig000085, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2906 32 96.9 36 C............................... TTAGATGATTATAGATATGAAAATGAAGTATATTTG 2974 32 93.8 34 C......A........................ ATCTTTTAAGCCGAAATCGACAACCTGCTCAAAT 3040 32 100.0 34 ................................ ATTATTGGCGGTCGAGTTAAGTTTTTAAGCCCGG 3106 32 96.9 34 A............................... TCCAAAAGATTTTGCGGAACCATTTATTTGTTGA 3172 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 97.5 35 GCAGCTACGTTCGCGTAGCTGTGAGTTGAAAC # Left flank : TTATGCATATTCCTGAATTAATTCGTATGGGCGCAAAAGCTGAGATAGAAGGAAATACTGCGATTTGTCATGGTGTGGATCATCTGTCTGGTGCGGAAGTGATGGCGACGGATCTTAGGGCTTCTGCAAGTTTAGTGATCGCTGGTTGCATTGCACAAGGTGAAACTATTGTCGATCGGATTTATCATATTGATCGTGGTTATGAGCATATCGAGGAAAAACTTCGTGGCTTGGGCGCTCGTATTGAACGTTTCTCTGATAGTGAAATAGAGTAAATTACGCATCATTATCTCTGTTTTCCTACTATAATTAAATCGCTAACCATTGGTTCTCATTGCATTCTAGGTGGTTAGCGAAATTTATTTTTCTTTAAAAATCAGATAGTTAATTCTAAGATATAGTATAAAGTGCTACTATATAAATAATTAATGTCCTTATATAAGAATATTAGCGAATTAGTGTGTCTAACCTATTGTTTTATATATATTTTTTATATTGGG # Right flank : CCCATTCTAACTCCGACATCCCAAGTATTAGGTTGTCAGCTACGTTCGCGTAGCCGGATACTTATATCTAAGAATTAGCAGTCTGATATTTAATATCTATAGAACTTAATTTATCGATGATAGACAGTAATTGCTCTGTTTTTTCGTCTGTGGTAGCCCAGCTTGTCGCAAATCTGATCATCGTATGATGTTCATCAATTTTTTCCATAAAGCCATATTCAGCATACTGTCGCAGAGCTGCAATAAAATCATCGCCGAAATTCCTTTTGAACCAAGGCAATATGTTTCTTTAGGTATTGCAGTTCCTTCAATGGAGATGGCTTCACCAGCAACCAAAAAATTTATAGATTGCATTAAAATGGTGACTAATTCGATTAAGAATGGTGTTTGATAGGGATTATAGCCATAAAAAAATCTGCACCTTAACTCAGAATATTTATTAAGGTGCAGATTTAAATAAGTTAAGAATTAGTTCTTTTGTTGTTTTTGGTAAGCATAGG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCTACGTTCGCGTAGCTGTGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCTACCTTCGCGTAGCTGTGAGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //