Array 1 179714-182564 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEDAF010000010.1 Halomonas pacifica strain CARE-V15 10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 179714 28 100.0 32 ............................ ATTGAGCAGGAAGCCGACACGATCCTGTTCCT 179774 28 100.0 32 ............................ ATGGATCGCACCGCACTTACCACCGAGTTCGC 179834 28 100.0 32 ............................ AGCGTTACCTCAAGGCGTTGAACCCGGCCTAC 179894 28 100.0 32 ............................ ATGCGGTCGTCCTCGGCGGCCTCCTCGTCCTC 179954 28 100.0 32 ............................ TGGCACTGCGGGCCGTACAACACATGCGGGCA 180014 28 100.0 32 ............................ TGGCGAAGAAGCTCCTAGAGGCCCAGCGATCC 180074 28 100.0 33 ............................ CGCCAGGTAGGCGACGGCGGCGGCGATCAGCAG 180135 28 100.0 32 ............................ CACTCCCCGGAGGACGCCGCCGACGCGATCCG 180195 28 100.0 32 ............................ GCCGCATGTTCCCGACCGCCGATCCCGTTATC 180255 28 100.0 32 ............................ TGTATGGAAGACGATTAGAGACCGCCTTGAAA 180315 28 100.0 32 ............................ TGCATGGCGCCCATCGAATACGAGGTGCCGCT 180375 28 100.0 32 ............................ TGCAGGAGCGCGGTACCGGGGTTCGCTGGACG 180435 28 100.0 32 ............................ AGGCCCTGCGCTACCGCTACGTCGTCGATAGC 180495 28 100.0 32 ............................ CCAAAGCATACCCCCCAACCCGCCCCGGCGGC 180555 28 100.0 32 ............................ GGCAGTGTGCCGAGCAACTGCCGGCGCTGGGC 180615 28 100.0 32 ............................ TCGGTGTAGCCATGGGCCACTGCCCCGGGATC 180675 28 100.0 32 ............................ TATGCCGGCGTCACCCTGGCGCAGATGAAAGA 180735 28 100.0 32 ............................ AGCCAGGCGGCGCTTGCCGCCCATCCAGGGAA 180795 28 100.0 32 ............................ ATCAGCTCGGGCTCGGGCACCTCGAGTTTGAA 180855 28 100.0 32 ............................ TCTCCCTTGGGGCCGCGGTTGGGGATGCCCAG 180915 28 100.0 32 ............................ ATCTCCTCGTACTGCTCGATGCCGAACCCCAC 180975 28 100.0 32 ............................ TCCCAGGCCTGCTGGGCGCGCAGGCGGAGATC 181035 28 100.0 32 ............................ ACCACGGCATCCGAGTCGCCGAAATCAACGAG 181095 28 100.0 32 ............................ AACGAGATGTATGGCGAGCTCGAGCGCCTGAT 181155 28 100.0 32 ............................ AGCATGAGAGGTTTGAACGACTACCCGATCAG 181215 28 100.0 32 ............................ TATAGTGAAAACCGGCAAACCGGTTAACCGGC 181275 28 100.0 32 ............................ CTCTACTGCGACGGCGCGATCACCTGGGCCGA 181335 28 100.0 32 ............................ ATGTAGTGGCGTGGTACCCGCATCTTCGAGCT 181395 28 100.0 32 ............................ TGTTGGAGTCGATCACCGCGACCAACCAACAC 181455 28 100.0 32 ............................ GCCAAGCGTGAGGGGGTGCTGTCATGACTCGC 181515 28 100.0 32 ............................ TGGGCGGCCTCGCGGGCCCGCGCCGCCTCGGT 181575 28 100.0 32 ............................ TCTATCGGCAATTCCTCGACCTCGTCCCCCGC 181635 28 100.0 32 ............................ TCGATGTGCGCCAGGGCCAGGCGGGTGCGGCC 181695 28 100.0 33 ............................ CTTGCTGGGGTTGAAGGTGGCCACCTGGGTCGC 181756 28 100.0 32 ............................ TGGGCGCCACGGAATTCCCGAACGGCGGCATC 181816 28 100.0 33 ............................ CTGGTTCAAGGAGAAGGCCGACCGCGCCGGGCT 181877 28 100.0 32 ............................ AGGTGCCCTCGAACGCCAGGCGCAGGCCGGTG 181937 28 100.0 32 ............................ AACCAGAGCCAGCAGGGCGAGGCCAACGTGAT 181997 28 100.0 32 ............................ TGGTAGCGGTGGACCCGGGCCAGCCGCTCGAT 182057 28 96.4 32 ...G........................ CACTGCTCCTTCATGGCGTTGGCCATCAGGTT 182117 28 96.4 32 ...G........................ TCCCCGGCTCCATGACCACTCCTCGGGTGCGC 182177 28 96.4 32 ...G........................ AAGCGATGAGCGCAGTCATGCAAACCAAATCC 182237 28 96.4 32 ...G........................ AATCCCGAAGACCTGGCGTCCTACCAGCAGAA 182297 28 96.4 32 ...G........................ TTCCGCCAGCGACAAGCGAACCGGAGCCACCA 182357 28 96.4 32 ...G........................ ACTCGACGCCCTCGTCATGGGCGATCTGTACC 182417 28 96.4 32 ...G........................ TACGAACGCGGCCATGTCGACTAGCGCTTCGA 182477 28 96.4 32 ...G........................ GATACGAAAACAGGTGGGCCCCAGGGTATAGC 182537 28 96.4 0 ...G........................ | ========== ====== ====== ====== ============================ ================================= ================== 48 28 99.3 32 GTTAGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : CGCGATTGGAGGAACTGATGGCGATCCCGTGGCTTACTGGTATGCGCGACCACGTCACATTGGATCCTGTACAAGCAGTACCCGCCGAAGCGCAGTACCGGATTGTTCGGCGCCGACAGTTCAACACCGGGGGCCTCAGCCGAGCGAAGCGGTATGCACAACGACACGGCATTGAGGTCGAACAGGCGCAGCGCTTGATGGAGACACCTGCCGCACGGCAGATCGCCCTGCCTTTCGTGCAGGTCAGCAGCCGCTCCAGTGGGCAGCGGTTTGCGCTATTTATCGAGCATGGCCAACCACAGTTGCAGCCTATTGCAGGTCGCTTCAACTATTACGGATTGAGTGGTAAGGCGACGGTGCCCTGGTTCTGACCCTTTTTACGGGCGCCCCTGAGCGGCTCGAAAAATCAAGAGGTTAGTGGCGCCTCTCTGAAAAGGGAGGCGTTGTCCTATCAAGCCATTGCTCTTTAACAATCAGTCGCTTACCTTTAAATCGTTCTA # Right flank : TCAGGAACAACACTCAATAAACAGTCACAATA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTAGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 421-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEDAF010000052.1 Halomonas pacifica strain CARE-V15 52, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 420 28 100.0 32 ............................ AAATGCCGACTCCGTTCGCTGGGTGATCGCGT 360 28 100.0 32 ............................ TGGCGGAGATAGGATAGGAATGGGAGAGCTGA 300 28 100.0 32 ............................ TCCAGCAGCTTTCTCAGGCTGACGAACTCCGG 240 28 100.0 32 ............................ ATATGGGCGGCAATTTGTTCGATGCAGGCCCG 180 28 100.0 32 ............................ AATATCAACAACATCGAGGACTGAACTAGCAA 120 28 100.0 32 ............................ TTGTCGAAGATGACCCGGCGGCGCAGGTAGTC 60 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTGGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : ACACACGCGACATCCGACTCTGCCTCTCCCC # Right flank : ATGACTCGTGTGGATCTGTGTCGCAACATGATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTGGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [26.7-18.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 31-958 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEDAF010000018.1 Halomonas pacifica strain CARE-V15 18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 31 28 96.4 32 ...G........................ TATAGCCCTACTGACCTGGTGCAGATTGACGC 91 28 96.4 32 ...G........................ TGACCCACGACATCCGCTACGTCCGCGAGTCG 151 28 96.4 32 ...G........................ ATCGGCGACTGTCGCGACGAGTTCGCCAACGC 211 28 96.4 32 ...G........................ TCGCTGATACGCTCACCAGTCTGGCCGTCGAA 271 28 96.4 32 ...G........................ AGCAGGTCGCGGGTGGCGCAGCGCAGCGCCAG 331 28 100.0 32 ............................ AGGTCGTGGTTTTCATCGAGCCAGCGGGCCTG 391 28 100.0 32 ............................ TTGCCCGGGGCGTCTCGCCCGGCCCCGGCGAC 451 28 100.0 32 ............................ TCTACTACCAGTGCGGGGCCTGCGGCCTGAAT 511 28 100.0 32 ............................ TCAGTAGTGTCCGAGGCGCCGGGCGCGTTGCT 571 28 100.0 32 ............................ TGGGCGAGACCGGGGATGGTATCCACCCGCGC 631 28 100.0 32 ............................ ATCGCCGACTTCGGTCGGCTGACCGGCACCCC 691 28 100.0 32 ............................ TATCAGGCGCAGCGGGGCAGTGTGATGGAGTC 751 28 100.0 32 ............................ AGGGGCCGGGTGGGCGTCGGAGAACAGGCCGG 811 28 100.0 32 ............................ TGGAGATCAACGAGGGAGAGGCCTACCGGGTC 871 28 100.0 32 ............................ CTGGCTGGGCCACCACAGCAGGTCGAGATACG 931 28 89.3 0 .....................CT.A... | ========== ====== ====== ====== ============================ ================================ ================== 16 28 98.2 32 GTTAGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : GGTCCCCTGACAATGAGCTGCCATGAAACCG # Right flank : ACTTCCTCTCTGGGTGGATCTTGGTCAGCGCCGTCGTCACCGTCGAGTAAGCGGCGTGATATTGCCACCTTGGAGCAGTTGCCGTGAGCAGCTTGTGCTGACTTATGGGGGATTGGGAAATTGGCATCAATGGGGGCGGTGATGGCCCCCATGGTCTCCCAGCCTGTTAGGCTTTAGGCAAATCCCTACCGAGGAGCCCGCCTATGTCCACCGAGTCCCCTTTCGACAAGAGCCTGGCCGCCATCGATGCCCTGCATGCCGAGGATCCGCGGCGTATCGAGGTGGAGGGCGAGTCGTTGCCCCTGGAGCTATGGCATGGTCGGCGCATGAGCGCCTGGCTGACGCGCCTGGTGGAGGCCCCCGACGAGTTGGTGCAACTGGCGGTGCGGGCCCAGCATCTGCAGCGCTGGCAGGTGCCGCGCGGCGACTATCCCGAGGGGCGGGTGGGTTACCTGAGCTGGCGGCGCGACCAGGGCCGGCGGGCGGGGGAAACCACGGCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : GTTGGCTGCCGCCCAGGCAGCTCAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTAGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //