Array 1 5108-518 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDEG01000034.1 Xanthomonas hyacinthi strain CFBP1156 Xhy-CFBP1156-G1034, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5107 28 100.0 32 ............................ AAAGGGCAGCGGCACGATGAGCCGCTGGCGGA 5047 28 100.0 32 ............................ TGGTAGCGCAGGATGATTTCTATTCCGGCCGA 4987 28 100.0 32 ............................ TGCTGCAGGCGCAGCACGTCCAGCACGCCCTC 4927 28 100.0 32 ............................ AATACCGGCGGCCTTGGCTGCCGCCGTCTGAT 4867 28 100.0 32 ............................ CTCGCCAGCTGCATTCCGCACGACCAGCCCAT 4807 28 100.0 32 ............................ AGTTTGTTCGTCGTTTTCATTCTTGGCGAGGG 4747 28 100.0 32 ............................ ACGTAGAGCTGCGCGTAGGTCTTGCCCTCCTT 4687 28 100.0 32 ............................ CTGTCCGGATGCAGGAACACCAGGCCCACTAG 4627 28 100.0 32 ............................ TCAGCGCGCAGGGCGGACAGGGCTTGTTCGTC 4567 28 100.0 32 ............................ ACACCTATTGTCTGCGAGCAACGCGAAGCGGG 4507 28 100.0 32 ............................ ACAAGATTGCACGAGGGGGGCGCGGCTCGGCC 4447 28 100.0 32 ............................ GATGCGCTGCGCTTCATCGCAGAACAAAACGA 4387 28 100.0 32 ............................ AGCTTGCGGCGATGGAGGACGACGACACGCTC 4327 28 100.0 32 ............................ AACCGCAGCTTGCTCATTCGGTCGTGCGCGCC 4267 28 100.0 32 ............................ ACCGCAGCGGCGATCGACGCGCGCCGTTGCTC 4207 28 100.0 32 ............................ GGCTATCGCACCTGGAACTGGGCGGACATCCT 4147 28 100.0 32 ............................ TCGATGAAGGCGTAGTCCGTCATCTCGCCAGG 4087 28 100.0 32 ............................ CAGCCGACCCGCTGGCTATGCTGCCGAGAGAC 4027 28 100.0 32 ............................ ACGCATCGTAGCAGAATGCCGCGTAGTCGCTC 3967 28 100.0 32 ............................ GCAAGGCAGCGCTGCGACGGGCCGCACCGGCG 3907 28 100.0 32 ............................ CTAGCGGTATCGGGAATCAGCCCACGGCAGGG 3847 28 100.0 32 ............................ CAGATCCGCGCGCAGTCCGAGCGTGCCGAGAA 3787 28 100.0 33 ............................ CTGCCGCCACCGTTCAAAGTCGATGTGTGCGCA 3726 28 100.0 32 ............................ TTTGCGATCCCGGTCAGCTCATTGAGCATCTT 3666 28 100.0 32 ............................ ATTCGTTGTCCAGCAAGTTCCGCATTGCCGGG 3606 28 100.0 32 ............................ ACTTGTAACGCAAGTGGCGCAACACTTTCAGC 3546 28 100.0 32 ............................ CGGACGTGCTGGACCGGATTTCCGGCGTCGCC 3486 28 100.0 32 ............................ TTATAGGCCAAGCCGTAGCGCAGGCGACCATC 3426 28 100.0 32 ............................ CGCTGCCGATGAACTGCTGGCCGTAGGTCTGG 3366 28 100.0 32 ............................ GGAATACGGCACAAGCAGGCGTAAGGCGATGC 3306 28 100.0 32 ............................ ATCGGCGGAATCCTTGGCGGAATTGGAAAGGC 3246 28 100.0 32 ............................ CTCTTGGTGATGCCGGAGGTTTCCAGGGCCAG 3186 28 100.0 32 ............................ AGTACCTGGCAGCCCTGGACCGGGCGAAGAAG 3126 28 100.0 32 ............................ TGCCTAACGCCGGCGGCGGGGTTGGAGGCGCA 3066 28 100.0 32 ............................ CCTATGTAGGAAGGCAGGTCACGTTGCTATTT 3006 28 100.0 32 ............................ TGTCTGATCTGAGCTTCCGGTGGTAGAGCTGG 2946 28 100.0 32 ............................ GCTTCGAGATCCGCGACATGATCGCTTGGGTC 2886 28 100.0 32 ............................ TCGAGCAGAATGTCGTTCGCGTCGATCAACGG 2826 28 100.0 32 ............................ GTCGTGTCGCTGAGCAGCACGCGGCCCCAGCT 2766 28 100.0 32 ............................ TAATGCCAGAAACCTTCACTTGGTGCGTCATC 2706 28 100.0 32 ............................ CACGGCAATGCACCGGCCGCGATCCGCGCGTG 2646 28 100.0 32 ............................ TGTGGCAGGCCTACCACGAGACGACCGACGCC 2586 28 100.0 32 ............................ TACTTGGGCCACCTGATGGTGATTGCCTACAC 2526 28 100.0 32 ............................ TGCTCCGGCTCGTAGGCGGCCACGTCGGCCTC 2466 28 100.0 32 ............................ TCGAGAGATCCACGCCATCCGATGTCCTGAAT 2406 28 100.0 32 ............................ TTCGTAAGATCGCCGTCGCGCAAGAATGCAGC 2346 28 100.0 32 ............................ TGTTCGCCCGCGTCGGTGCTTATCACGTGTCC 2286 28 100.0 32 ............................ ATGCAGTGCCGACCGTGGAACCAGCAAAACTG 2226 28 100.0 32 ............................ CTCCGCCCTGGCGCCGGCCTCGTCGATATCCT 2166 28 96.4 32 ......................T..... TTTTCCAGGTCGAGGTCATGCGCCGCGGTCAG 2106 28 100.0 32 ............................ GGCCGGGTGGCGCGTGACAATATTCCGAGATG 2046 28 100.0 32 ............................ TACCGGACCGTGAAGGACTGGATGGACAGTCG 1986 28 100.0 32 ............................ TGTAGGTGCGTGGTCTGCTCCGGCGTGTCGTA 1926 28 100.0 32 ............................ CCCGTGTGCTTTGGGCCAGCGAAGGCCAAACC 1866 28 100.0 32 ............................ ATCAAAGACGCCGAGAAGAAGGCGGATTGATG 1806 28 100.0 32 ............................ ACATTGACTGGGCCGCCACCGGGGCCGGACAG 1746 28 100.0 32 ............................ ATCGCGCGCTTGTTGTCGGTGCGCGGCATCAC 1686 28 100.0 32 ............................ AGCACGGCGAAGGTCAGCAGGCCCAGCGACTG 1626 28 100.0 32 ............................ GATGGTAACGAGTATCGAGTCCAGTGGGCGGT 1566 28 100.0 32 ............................ ATCCTGCGGATCGTTGGATTCGCACACGTCTC 1506 28 100.0 32 ............................ AGGCGGATCATCCGCCGGCGGTAGGCCGCGAT 1446 28 100.0 32 ............................ CGCAAGAGTGGGGATGCGACTGGTCGGAGAAT 1386 28 100.0 32 ............................ TACCTGTGTCGCTTGGTCACGCCTCCCGGCGG 1326 28 100.0 33 ............................ TGGAAATCCGGCGATGTAGTCCTGGTCCTGAGT 1265 28 100.0 32 ............................ AACGCGTGGAGGCATCAGCAGTATTTTCTGCC 1205 28 100.0 32 ............................ ACCCCGCAATCGGTCAGGGTGTAGTCCAGTAA 1145 28 100.0 32 ............................ AGCTTCCAGACGCTGATTCCGCTGCTGAAAGA 1085 28 100.0 32 ............................ ACGCTGCCATACTTCTCGACTGGTGCCAGGGA 1025 28 100.0 32 ............................ CATGGCCCGGGCGTCCACTTCTTCTCGGCGGC 965 28 100.0 32 ............................ TACCCCGGAAGTCTGATCGCATGTAGTGCGAC 905 28 100.0 32 ............................ TACAAGGCATGGACTGTGATGCCGTCTGGCAA 845 28 96.4 32 ........................A... AAGACGCCGAGGAAACGGCAGCGACAGAAGAC 785 28 100.0 32 ............................ AGATCGCACGGGCCATTTGGCCGAACGGGGAT 725 28 100.0 32 ............................ ATTGTCGGGGTTGTACTGCTTGGTCTCTGGCC 665 28 96.4 32 .........T.................. GATGCCCAGCGCTGGGGCTTTCTAGACCTCGC 605 28 100.0 32 ............................ ATCCCCACACTGCGGAAACGACAGTCAGCCCC 545 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 77 28 99.9 32 GTTCACTGCCGCATAGGCAGCTCAGAAA # Left flank : ATTGCAGGGATTGATGGCAACGTCCTGGCTCCAGGGCATGGGCGACCATCTGTCGATTTCCGGCATTGCCCTGGTGCCTGACGGAACCTCGCACCGACAGGTGACGCGTGTCCAGGCCAAGAGCAGCCCCGCGCGCCTTCGACGCCGCGCCATGCGGCGGCATGGTTGGGATGCCGACACCGCGGCCGAACGCCTCCCTGATGCGGCGGCCGAGCGACTTCGGCTTCCCTTCATCACGCTCGGTAGCCGAAGCACCGGCCAGGCGGCTTTTCCCTTGTTCATTCGGCATGGGCCAATGCTGCAGGAAGCCAGGCGAGGCCCGTTCAACAGCTATGGCCTTAGCCATGAGGCAACGGTTCCCTGGTTCTGACCCTATTTTAGCGCCCCAATAAAATATCCAAAAAATCAACCACTTAGATGCCATCCTCTCGAAAAGGGAGGATGGCTTTTTTAAGCTTGGTTTACTATTATTTTCAAGCACTTGGATGAATGCCGGTCTT # Right flank : TGGTTCCTGATTAGCCCTGACCTTCAGCCAGCAGTCGCAGGATCTGCGCTGGCGTGAGTTGATGCTGTCGTCACCTGAAGCCTACGAGGTGGCGTGATGAGCATCAATGCCGTGCAGTTCCAAGCTGGATTGTCGATGCCGGATTTTTTGGTGTCCTACGGCACTGAGGCCAAGTGCTACCGCGCGTTGTACAAGTGGCGGTGGCCGCAGGGATTTCGCTGTCCCTCCTGTGCCGGGCGGGCGCGGTCGCGTTTCAAGGGCAGTGCCGCGATCTATGACCAATGCAGCGCATGCCGGCATCAGACCAGTCTGATTGCAGGCACGATGTTTGCCGGCACCAAACTGCCGCTGCGCAGCTGGATGCTGGCCTTGCACCTGTTGACCTGGACCAAAACCAAGATGGCCGCGCTGGAGCTGATGCGTCATCTGGGGGTCAACTACACGACGGCTTGGCGGATGAAGCACAAGATCATGCAGGTCATGGCCGAGCGCGAAGCGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 88257-85809 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDEG01000009.1 Xanthomonas hyacinthi strain CFBP1156 Xhy-CFBP1156-G1009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 88256 31 100.0 35 ............................... ATGAACGCGAGATCCGGCCAGGCGAGAGGCTGAAG 88190 31 100.0 35 ............................... CGGGGTGGTTGCCCATGGATGCCTGCGTCTGGATT 88124 31 100.0 34 ............................... GTTAGCTACTGCTCGGACTACCCTGAGTGGAATC 88059 31 100.0 34 ............................... AACATCGCGTTTAGCGACGGCACTACCGACCCGA 87994 31 100.0 34 ............................... CGCTGCTGAAAGATGGGTCATCCGGCTTGCGTGA 87929 31 100.0 34 ............................... GAGGCCAGCACGGAGTTTGCGGAGCTGGCTGAGG 87864 31 100.0 35 ............................... GCAAGCTGCATTATCCCGCTGACGGCCGGGCAAGC 87798 31 100.0 35 ............................... TTGCGGAAGAACTTGGCGGCGTCGCCGGCCGTGTG 87732 31 100.0 35 ............................... TCGTTGTATTGCTTGCCGTAGGCGCGCAGCGCCTC 87666 31 100.0 33 ............................... TGCAGGTCGTAGGTTCTCGCATCGCCCTGGTGG 87602 31 100.0 35 ............................... CAACGCAGCGGCAGTGCCCAGTTGCCTGGGGAAGT 87536 31 100.0 35 ............................... AACTTGCGATGAACAATCACCTGTCCACCGAGCAG 87470 31 100.0 34 ............................... AAGGCACTCGGTGTTGCGACAAGACAGCGGTCCC 87405 31 100.0 34 ............................... CCCGTGGGTCTGATCGAACGGTTCCTACGCCTGT 87340 31 100.0 34 ............................... GTTGATGGCCTGAAAGTCGGCGACACCTACGAGC 87275 31 100.0 36 ............................... CTGATGATCCACAACGCATGGGTGATGGCTGTCGGG 87208 31 100.0 34 ............................... TTGACCGGCGCGTTCCGTCTCGGTGCCCAGGTGT 87143 31 100.0 33 ............................... CCAAGCTGGCTGTTCACCGGCTCGTCGAAGATG 87079 31 100.0 35 ............................... GGTGGCTATGCACCAGCGCAAGCACGTCGCCAAGA 87013 31 100.0 35 ............................... TATGGACCCGCGTCCAGTTTTCCGCCGCCCCTGGG 86947 31 100.0 34 ............................... AACTGCCCCTGGCCCCAATCAGTAGTCCCGCCGC 86882 31 100.0 33 ............................... GGTTTCAGCGATTCAGGCCTGGCACACGGCCAG 86818 31 100.0 35 ............................... GCGCCAAGAACGTCGCCCAGCAGCAGCCGCCCAAG 86752 31 100.0 35 ............................... TGCTTGAGGATGCTGGGATCAATTCGGCATTCCGC 86686 31 100.0 33 ............................... TGGATCGAGCACGGGCTGAACGAGCTGGCCGAC 86622 31 100.0 35 ............................... GTCGTACGCAAGCGATGCCCCGCCAAGCCATGGGT 86556 31 100.0 34 ............................... ATCCATGGCGACGCGATCCTCTCGGCGCACCAGG 86491 31 100.0 35 ............................... CCGAAGGACATGTTGAGGATCCGTGCGCCCTGAGC 86425 31 100.0 33 ............................... CTGACGATTCGTGAGCGGCTGCTGCACTGGCTG 86361 31 100.0 35 ............................... CGGTAATTGATCCTTGCGGCGTCGTACTCGTGATC 86295 31 100.0 33 ............................... CTCCTGCAGGAGAGCGCTTCTCGGAAACCTCTG 86231 31 100.0 35 ............................... TTCAGCATGCCGCCCATCGGCCCGGCCGCGGTCTC 86165 31 100.0 34 ............................... TTTTTCGGCGTGCAGGAGGGGGTTATGGGTTACT 86100 31 100.0 36 ............................... TGGTATTGGTCGCGCTGGTCGAAAGTGGCCTGCCGG 86033 31 100.0 33 ............................... AAGGAGGCAGGCTTTCTCTGCCAGCCTCCCCAA 85969 31 100.0 34 ............................... ATGCTGCCGGTTACAGTCTGCGCATTAGCGTTCA 85904 31 100.0 33 ............................... GGGTTGACCTTGTTGCGCAGCACAGCGGCGGAC 85840 31 83.9 0 A...........A..A.C..C.......... | G [85811] ========== ====== ====== ====== =============================== ==================================== ================== 38 31 99.6 34 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : ATGAAAAGGCCGCCGCGCCATGATGGTTCTGGTCAGCTACGATGTCAGCACGAGTTCCCCCGGCGGTGAAAAGCGACTGCGCAAAGTTGCCAAAGCCTGCCGCGATCTCGGCCAACGCGTGCAATTCTCGGTCTTCGAAATCGAAGTCGAACCTGCGCAATGGGCCGCATTGCGGCAGCGCCTATGCGACCTGATCGATCCCGCCGTCGACAGTCTTCGCTTCTATCAGCTCGGTGCGAAATGGGAAGCCCGTGTAGAGCACGTCGGCGCCAAGCCCAGCCTGGATCTCAAAGGCCCGCTGATCTTCTGACGCGAACCGCAAGCGACCGGGAAAAGCCCGGCAGGTTCGCGGAATTCCACAAACCATTGATTAAAAAGAAAAATATTTCAGAGCACCCGCTAACTGCAAGTAGGCGGCAACTGAATTCGATTGTGCCTCTTAAGGTTCCGCACAAGTGCGGACTTTTTCCCAATGCCCATCAGCGCTTATGCTCAGGGGG # Right flank : ACATCTGCAGGCAGGTGATCCCGTCGCGGGCAAACTCGCCGCCCCACCACAGCACGGGGATTGAAACACATTGTATTTGCCCACAAAAAAAGCGCAGCCTCGCGGCTGCGCCCAGCGTGCCGCGCCAGCCGGGAGAGAGACGGCTGGCGCGATCCGTGTCTGCGGCATCGCTCAGCGATGCGCGAGAGGCCTCACTTGACCTCGAATTCCTGCGGCGTTCCGGCCGGCTGGCCGTTCACGGTGACCTCGGCCTTGTACTTGCCGGCCGGCCAGCCCTTGGCGTTGGTGAAGGAAATGTTGGTGGTTTCCGCACCGGCGGTGGTCAGCGTCGCACTCTGCTCGCCAGCGGTCTGGCCGTCCTGGAACAGCAGCTTGACGCCGACACGGGTGTTGGTGGAGGAACCCTCGGTCTTCACCGAGACGATGATGCTGTCCTTGCTGGCCAGCGTGGTCAGCGGCGCCACCGTCTTGTCCGCGCCGGCGGTGTTGCCCACGGTCAC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //