Array 1 60266-51959 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKVU010000004.1 Xanthomonas massiliensis isolate MGYG-HGUT-01534, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================== ================== 60265 31 100.0 39 ............................... TCCAACGCTCCCGGCATCGACGGCGGCGTGCTGACTGGT 60195 31 100.0 35 ............................... CCGAACGGGCTGGTCGATGCCATCGCCTATGCCGT 60129 31 100.0 38 ............................... CTCGTAGTCAGTGCCCCCCATGTCGCCCGCAGCGGTGT 60060 31 100.0 37 ............................... CAGGTCACGGTGTCCGATCACCCTCGCCAGTTCCAGT 59992 31 100.0 37 ............................... GCCTACCAGGGCAGCGGGCGCAAGACGAGGCACACGT 59924 31 100.0 37 ............................... GCCAAGGTCTTCGTCCCAGATCACCGGGTATACAGGT 59856 31 100.0 38 ............................... CCATCGAACTCCTTCGCCACGCGTCGCGTCTGCGCCGT 59787 31 100.0 37 ............................... GATGGCGGCACGATGTACGTTGCGCTCCAGGACGTGT 59719 31 100.0 37 ............................... TCGTACAGGGCCATGAACGGCGCACGATCCTCGCCGT 59651 31 100.0 37 ............................... CAACGAAGCACCCGAGGCCGAGGACTTCGAAACGGGT 59583 31 100.0 37 ............................... CTCTTGCGCTCGGCGTCCGCTTCTTCCCAGCCGGAGT 59515 31 100.0 36 ............................... CCGTATGATGTGCTTGCACCCACTGCAAACCATTGT 59448 31 100.0 36 ............................... TGGTGTCACGGCGAAAATACGGCGAGGGGTGCTGGT 59381 31 100.0 36 ............................... GGGGTCTACGTACCGGCGGCCGGCAACGAGGGAGGT 59314 31 100.0 37 ............................... ATCCGCATCATCCACAGCGAGGGCCGGTACTCCATGT 59246 31 100.0 37 ............................... AGGCGTTAGCTGGCAATGGCACAACTCCAAGGCCTGT 59178 31 100.0 36 ............................... CCGGTCCTGCATTGGTCCGATCAAGAATACTGTTGT 59111 31 100.0 38 ............................... GTGCGAGCCATAAGGTCGGATGCGCGCGATGCGGTGGT 59042 31 100.0 37 ............................... CCGCGTGACGTGCTCGGCCCCGACTTCGTGCGAGCGT 58974 31 100.0 37 ............................... CAGGAAGTATTGGTTCTCGAAGTCCCGGACCTGCCGT 58906 31 100.0 37 ............................... ATCGAGAGCCGGGCCGGCGCGCTCCAGATCGAGGGGT 58838 31 100.0 36 ............................... CAATACAATTGGTGGATTGGCTCCAATATGGATGGT 58771 31 100.0 37 ............................... TAGGTGGGAAGTATTCACCAGATGGTGAGGATGATGT 58703 31 100.0 37 ............................... TGGCCGAGGCGATGACGGATCTTGGTGCGCCGCCAGT 58635 31 100.0 37 ............................... GTTGCCAGCGCGGCGACGGCGACGATCCAGCCGGTGT 58567 31 100.0 37 ............................... TTCGGTCGGCGCGCAGATGCCCAGCACGTCGCGCAGT 58499 31 100.0 36 ............................... AAGTACCTGCCGGTGTCGATCGAGATCCAGCGCGGT 58432 31 100.0 37 ............................... ATCGGTGGCCTGCTGGCCAAGCCGCCGCGCGAGACGT 58364 31 100.0 38 ............................... GATCAAGGCGTGTACTGGCAGCACTGGGATTTCCCGGT 58295 31 100.0 38 ............................... ATCGGTGGCCTGCTGGCCAAGCCGCCGCGCGAGACGGT 58226 31 100.0 38 ............................... CGTGGCGGCAAGCCACGCGCCGAGCGCAATCTGCCGGT 58157 31 100.0 37 ............................... GGCCTGGAACCGCTGTCCGCGCTGGCCAGCGACCCGT 58089 31 100.0 37 ............................... GCTGCGAGCGACCTCAACGGCGACGAAACCGCGTAGT 58021 31 100.0 36 ............................... TCGTAAGGCAGAGCCATCACGGAACCTCCGGCGCGT 57954 31 100.0 37 ............................... TCGATTGTGGCAACCATATTGCTGATGTCGTGCGGGT 57886 31 100.0 36 ............................... AAGCATCCCTTCTGCCTTCGCTCGGCAATAGATTGT 57819 31 100.0 36 ............................... GCGCAGCTGGATGTGCAGGCCGCTGGCGATGATGGT 57752 31 100.0 38 ............................... CGGTGCTGGGCCGCCATGGCGCAACGCCGTTGAAAGGT 57683 31 100.0 35 ............................... CAGGTCCTGCGACAGGGCAGCGTACAGGCGGCGGT 57617 31 100.0 36 ............................... CAATGAATCCGTCCAATCCATCATCGGGGCCACGGT 57550 31 100.0 37 ............................... TGTTAAAGTGGACAATCGCAGACGCCCCAGCAGCTGT 57482 31 100.0 37 ............................... TGTTAAAGTGGACAATCGCAGACGCCCCAGCAGCTGT 57414 31 100.0 36 ............................... AACAACTACATCGTCAACCCCGTGGCGCGGGCGGGT 57347 31 100.0 35 ............................... GATAGTGATGCTGCTCATTACCATGCCCCCCAGGT 57281 31 100.0 37 ............................... CCGCTAGTGAATTCGTGCACCTACAGTGATCGGAGGT 57213 31 100.0 37 ............................... CAAACTCCGGCGCTTCGCCGGATGGCCTTATCGGCGT 57145 31 100.0 37 ............................... TGAAAGCATGGAAGATGAGCCAGGAGGCCGGCGATGT 57077 31 100.0 38 ............................... ACCATTGCGGGCGTGTACGACGTTCACCCGCAGACCGT 57008 31 100.0 36 ............................... CGCACAGTTGCGCTTACGGTCGTCCTGCGAGCGCGT 56941 31 100.0 36 ............................... CCTAGCGCGTTGGACTAGATCACTCACCACCCACGT 56874 31 100.0 37 ............................... CAGGGCGAACAGGAAGGCAAGGGCGATCCGGTCAGGT 56806 31 100.0 37 ............................... ATCCATGGAGCCAATCCTGTGGCATGGCGATAAGGGT 56738 31 100.0 37 ............................... TTCGTTCACCCCTTGAGACGACAAGGAATGAGGATGT 56670 31 100.0 36 ............................... GTCGTGTCGGGCACCGGGCTGTACCAGGTCAGTGGT 56603 31 100.0 37 ............................... TATAACGCCGACGGCAGCATTGCCGCGAATCATGCGT 56535 31 100.0 38 ............................... GCGTGCAGCAAATTGGGGTATGCACCCTTGAAGCGGGT 56466 31 100.0 36 ............................... CATCGCTCGCCTTCCGAAGCCTGCCGACCTGCAGGT 56399 31 100.0 36 ............................... GTCACAGATACTTTCAACATCATTTCGCCCGACGGT 56332 31 100.0 36 ............................... CAGAAAGTCGCTCAGTTTCTCGCTCATTTCCCAGGT 56265 31 100.0 37 ............................... TCGTGATGAACGCAGGCGACCTCGACCGCTTCTGCGT 56197 31 100.0 38 ............................... TGGATGGTCTTGGGTGCAGGTATGGAGTAACTACACGT 56128 31 100.0 37 ............................... CCTCGTTCCCCGTAAGCAATGCGCTCCCGGATGCGGT 56060 31 100.0 35 ............................... GTCAATGCGGTCGAGAGAACGCACGGCGCCGAAGT 55994 31 100.0 39 ............................... CGCTCCGATCATGGCGAGCAGGGAGGATGCGGCGCAGGT 55924 31 100.0 37 ............................... CGATCTTAACGACCGCAGCGCCGCAGCGAACAACGGT 55856 31 100.0 37 ............................... CTCGGATTGACCGGTACGGCTGGGTATGCGGCAGGGT 55788 31 100.0 36 ............................... CGGCACTTGCACAGGGCCACCGCATTCACTGCATGT 55721 31 100.0 37 ............................... ACCTCGGCGCTGTTCGCGGTCGCGCGCAAGAACGCGT 55653 31 100.0 37 ............................... TCCGTCATAGTCTCGCAGCCACACAAGTTCGCGGCGT 55585 31 100.0 38 ............................... ATGCGCTACTGCGCCGACAACGGCTACACGTACGATGT 55516 31 100.0 36 ............................... TGAGCGTGGCGTGCGCTGGTCGGCCAGGGCGAAGGT 55449 31 100.0 36 ............................... TTCGTAACGGTGGCCAGCCGTTACCGACTAACGGGT 55382 31 100.0 37 ............................... TGTTACCGGACGGCCGCGTAGGTCACCGGTATGCAGT 55314 31 100.0 37 ............................... ATGCACTGCGTCACGCGCCCGTTCGTGCGGCAGCTGT 55246 31 100.0 38 ............................... ATGCAGGCGGTCGCCAAGATGAACGAGGGAACGGCGGT 55177 31 100.0 37 ............................... ATGCACTGCGTCACGCGCCCGTTCGTGCGGCAGCTGT 55109 31 100.0 38 ............................... GCTGCCGACCTGGCCGAGATGCAGGACCAGTTGCCCGT 55040 31 100.0 36 ............................... ACTCAGTGCATCCCGGTATCCGCGAAGGCGGGCAGT 54973 31 100.0 36 ............................... CGGCGCAGAGCTTGCGGCCTAGCATCGCGTCCCGGT 54906 31 100.0 35 ............................... TTGTTGCCGCTACTGTCGGCTGGCAGCTTGATCGT 54840 31 100.0 37 ............................... GTTAGGAGCCACTGAGAATGCCGAGCTTTCTGGAGGT 54772 31 100.0 36 ............................... AGCAGGGTGCCGACTTGGATCGGCTTGAGAAGCTGT 54705 31 100.0 40 ............................... AGCCATAGGAGTGACTGCCATGTCATACGCGCCAGCCAGT 54634 31 100.0 36 ............................... GATCTTCGCGAAGCGGCCCGCGTGCAGCTCAAGGGT 54567 31 100.0 37 ............................... GTGCGCAGGGGGGCTTGGTAATGAGCAGCATCACTGT 54499 31 100.0 38 ............................... CTGAACTGGCGAATCGCAATCCGTGCCATCGCCGCGGT 54430 31 100.0 37 ............................... ATTCAAGCCGACGCCTTCATCGCGGCGTCGATTGCGT 54362 31 100.0 38 ............................... TTCGGCATTGCTTTGACCGTCTTTGCCACCATCCCAGT 54293 31 100.0 37 ............................... GCGTGCCGCAGCCGCAATACCAGCGGCACGCTGTCGT 54225 31 100.0 37 ............................... CCCCAGGCCCTCGTCCCATATGATCGGATAGACGGGT 54157 31 100.0 37 ............................... TCGCCCTTGGCGCGCTCGGCCTCCAGCGCCTTGGCGT 54089 31 100.0 36 ............................... CACGCCCTCTGGACCAGCACCGGCGGCGACTGGGGT 54022 31 100.0 37 ............................... TGGGCACAACGGCTTGTTGTGCTTGTGCCATTCGGGT 53954 31 100.0 36 ............................... TTCATGTCAGGCCCTAAAAAGGAATCGAATCAAGGT 53887 31 100.0 37 ............................... ACCGGCCTGGCAGCCAAGGGCCGCGGCATCGCCCGGT 53819 31 100.0 37 ............................... AACACGACGGGCACGAGTACGAGATCCAGGCGGTTGT 53751 31 100.0 37 ............................... TGCGGAGGGCCGACGAGCGTGCACTGTGTGAGCGCGT 53683 31 100.0 37 ............................... TTCCGTCCAATACTGCCGGATGCGATTCCATGCGGGT 53615 31 100.0 38 ............................... AAGGCCATGGCCCTCGCTGTCGTGGACAAGGGCGAGGT 53546 31 100.0 37 ............................... ATGCTGCCCGAATCCTGCGCAGGACGATAGTGATGGT 53478 31 100.0 37 ............................... TTTGCGCAACTTGAGATTGCCGGCAGCAAGATCAGGT 53410 31 100.0 37 ............................... GCGTTTGCCGGCTTACAGGATCACACGGCAGACAGGT 53342 31 100.0 36 ............................... ACGCCAGCCTCTGGTCTCGGTCGATGGCTGCCAGGT 53275 31 100.0 37 ............................... GACGTAGTGGACGCGGTGGTGGGCGTCATCGCAATGT 53207 31 100.0 36 ............................... GATTAGTGCCGGCTTGGTCACACCCCGCCGGCGGGT 53140 31 100.0 37 ............................... TTCACCCCGACGCCAGGGGGCTGGACGCAGAAGCGGT 53072 31 100.0 36 ............................... CTCCGCCCGTCTCTTGCACTCGTCCAGGTCCGTAGT 53005 31 100.0 36 ............................... GCCATGTATCGGCTGATCCTGTGTGGGGATCGCGGT 52938 31 100.0 38 ............................... GTGCTCGGTGACCTCGGCATTGAGCGACAGCAGCGCGT 52869 31 100.0 37 ............................... CACAACCCATCCGAGATCCTCACACGCATACGCATGT 52801 31 100.0 36 ............................... TCGCAGACCCCGCACATCGCGCAGGTCTACGTGGGT 52734 31 100.0 35 ............................... GTCTTGAACAGCTCGTCGGCGGTCAGCAGGCCCGT 52668 31 100.0 37 ............................... CATATTGTTGTAAAGGCGGTGGTGGGATGAGCGAGGT 52600 31 100.0 35 ............................... TCTGCCGCCGGGGCTGCCCTTGCCCTTGTCCTGGT 52534 31 100.0 37 ............................... ACCTACTACCCGGGCGCTGAGAACTGGGCCAACGTGT 52466 31 100.0 37 ............................... AAGCAAGCCGCGCGCAATCTTGAGATGGCCCTTTCGT 52398 31 100.0 37 ............................... CTGACCACGGCGCAGCTTGCACGGGTCGATGCGCTGT 52330 31 100.0 37 ............................... ATCGTCATCCCGCGGGCCCATGTCGCAGCGCTGATGT 52262 31 100.0 37 ............................... GAGAGAGAACAGCACCCACCATTGCCGCACCGCTGGT 52194 31 100.0 38 ............................... CAATTGGTTCGCGGCGGAGCGAACGCCCCGCGCCCAGT 52125 31 100.0 37 ............................... CATGTCCAGCGCCGTGGCCAGCGCCATCACCCGGAGT 52057 31 100.0 37 ............................... CAGTCCTCCGCGGCGACGCGATCCTTGATGTACGCGT 51989 31 93.5 0 ..T...........................T | ========== ====== ====== ====== =============================== ======================================== ================== 123 31 99.9 37 CGCGCCCCACGCGGGGCGCGTGGATTGAAAC # Left flank : GTTCCTGTGGAAATGACTCGGGAGTCCGCGCCATGATGGTCCTGGTCAGCTACGATGTCAGCACGATCTCCGCTGGCGGGGAGAAACGCCTGCGCAAGGTCGCCAAGGCCTGCCGAGACCTGGGCCAGCGCGTCCAGTACTCGGTATTCGAGATCGAGGTCGAGCCAGCGCAGTGGGTACAACTGCGTCAGCGGCTGTGCGACCTGATCGATCCGGAGGTCGACAGCCTTCGTTTCTACCTCCTCGGCGCGAGATGGGAAGGTCGAGTGGAGCATGTCGGCGCCAAGCCGACCCTGAACCTCAAAGGACCGCTGGTCTTCTGACGCGAACCTCAAGCGACCGGAAAACCTCCGGCAGGTTCGCGCTCCTCCAAGCCATTGATCTGCAATGCAAACCGGGCGTGATCAGGTTCGGCCGTAGGCAAGACACACCGTTTCTCCCGAGGCTCGCGAAAACACGACTTCCCCGCTTGCGAGAACAAGCATTTATGCTGGGGTGGT # Right flank : GCCCACAAGATCGCGGGGTTCGAAGCTGAGCGCGCGTGGATTGAAACGGCTTCTACCACGCGCTGGCCGCGGTCGAGTGGCGTCGCGCCCTCACGGGCGCGTGAAACATCTCTGCGACCTTGAGCTACGTGTCCACGGGCGCCAAGCTTGAAACTGACCGAAGAGACCGCGAACCATAGGAGATGATGGTCGCACCCTCATGGCGTTGGCTAAACCCGCGTGCGCTCCGCAATGGCATCGAAGATGGTGCGCCCGGAGGGATTCGAACCCCCGACCAATGGCTTCGGAAGCCACTACTCTATCCGGCTGAGCTACGGGCGCGTAGGACACGCATTCTAGCGGCAAACGCGGCGCAGGTCTGCCCCCGTGGACGAGTCCGGAGGGACTGCTACCCTTTTGCCATGCCCATCCCCTCCGCCCTGCCCGCCGCCCCGCGCTGGCGCCTCTACTGGAAACTGATGCGCGCCGACCGCCCGATCGGCACGTTGCTGCTGCTGTGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCACGCGGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.00,-11.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //