Array 1 1497-1223 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASA01000031.1 Gilliamella apicola strain N-G5 NODE_31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1496 29 100.0 32 ............................. CGATTTATACGAATATTGGTGTAAAAACCATG 1435 29 100.0 32 ............................. CTCTGCCTGTTGATTTAACATATATTGATCCT 1374 29 100.0 33 ............................. AGCGTCGCTGTCCATTTGTCAGCGATTGTATTT 1312 29 100.0 32 ............................. AAGAAATCGACGAACTACAAGCCGAACTGGCA 1251 29 96.6 0 ..A.......................... | ========== ====== ====== ====== ============================= ================================= ================== 5 29 99.3 32 ATGTTCCCTGTACACACAGGGATAAACCG # Left flank : AAGATATATGGTGGAGTTTATAACTTATTTGACAAAGATGTCTCAAACGATGACTTTGGTAAAACTCTAGAAGGACGACGTTACTTCATAGGTGCCGAGATTAACTTCTAAATCAACTAATAAGTATTTTCCTATAAAAAAGATGGCTGTTCAAACAGCCATCTTTTTCTATTTATACTAATATAGATTATTTATAATCCAAAAATAGAAATACCTTTTTACCCGCCGATAAAATAACTTAGTGCAATGCCAACATAGTAACTTTTTGCTATTTAATAAATCCTTATTATACATTTTAATGTATTATTATATTTAATATAATGAAAAATAACAATTTATTGGTAGAATCCTATGAATATTAATTTTAACTACCGTTAATTTAAATTAAATCAATAAAAACATAGTGTTATAAATACTAATTTTATTACAAATTAACCCGAAAAATCGGTAGAAATTTGACGGCCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : TTCTATAAAGCTGGTTAGTCAGACTAAGAACGAAGAATTGGCTAAAATAATTAATGAAATGGATTACATCCCGTGGATAGCGGTATCAACTCCAAGAGGTGTTTATGCTCATGAGATGGGGCACGTGTTACATTATCAATATAAAGAAGATATGGATGATATTATCAAAAAATCATAGGGCGAGCTTGGGCTGCAATTAGTAATTATGCTCTACATAAAAAACGAGAATTTGTTGCTGAAGCGTTTTCGTTGTATATTGAAAATCTCAGAGAAGCTAAAAAGCGACTTTCTCCAGAATTATTTAAACTTTTCGAATCACTAGATAAGGACATTAAATGAATAAGTTTGATTTATTAGTTGAGCAAGCAACTGAACTGATTAACACCGAGCCACTTCCTGATGATGCAGAGGAGCAATTGCAACAAATTATCGACCAAGCTGACGACAAAACGGAAAGACACATGTTAGGGAGGCTTGCTGAAGCTCTGTTTGTTATAAGG # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTACACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 53479-53935 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASA01000001.1 Gilliamella apicola strain N-G5 NODE_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 53479 29 100.0 32 ............................. CTGATCTTTAGTTGTCATTAAATCCTCAAAAT 53540 29 100.0 32 ............................. ATTAATAGTATCTTGCTTTTTCTCCCAGTATT 53601 29 100.0 32 ............................. AATAATATATCTAAATTTAATTCTAAATCAAT 53662 29 96.6 33 ............................T GTCAATTTTACTGAAACTGACTCGCAATCGATA 53724 29 100.0 32 ............................. AAAACCCGCTTATTTTTCGCCATGATTGTAGT 53785 29 100.0 32 ............................. CAATTGACCCTAAAAAAAGCCCGTTTTATAAA 53846 29 100.0 32 ............................. TATACCTGAGTGGTGCTGACCTGAGTGGTGCT 53907 29 89.7 0 .......................T..T.A | ========== ====== ====== ====== ============================= ================================= ================== 8 29 98.3 32 ATGTTCCCTGTATACACAGGGATAAACCG # Left flank : ATCATTTTTAAGCTAAATTAAAATTATTAAAATAATCAATATAGTTATTGTTAGCAACCGATTCGTTAATATCAGCTTAATAACATTAATTATGCTTTCAATAAAAATATTGGTTAAATCAAAATGATTTGATTGAAAAATTACCTAAAAAGTTGGTAAAAATTTTAATGTTGCTATTTTAATTATAAAACAAACAGTTATAATTAGAGTGTTCCCTGTATACATAGAGATAAACCGTCGATTTGTTAATATTGCATATCATTTTTTTGCTCTTCAAAAATCGCAATTATGTATTTCATTGTTTACTTTTTTTTAATTACATGAAAAATATAAACTTATCGGTAGAATCCCGTAAAATCTAATTTTAACTTCTATTAATTTTAATTAATCAAATAAAAACATAGTGTTATACATTATGATTTTGATGAAAAATATCCAAAAAAATCGGTAGAAATTTGACAGTCAAGATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : AATAGTAGGCATAAATTTTTCCTACAGTGCTACAATTGGTTGGTATTTATAAACAAAATTTAGCCACGGTTATCAACCTGTGGAATGATTTGCGAGAAAAAACAAAATTATCTGATAAAAAGCAACTATACTCTATTACCATTACAAAATTGCAAGGCATGCAAAGGTGGGCAGTCAAGGCCTTAACGATTCAGATACCTGCTCATAACCCAATATCTATTTACACTCATTAACACAAAAAATCAGATTAATACAACTAGTTTGTATAAACTATATACATATTCACAATAGATATAAAGACAATGTGAGGATGTAGTATGACCAAGCAAGTGGCTGTTTTAGGAGATATGACCAATTATGGTGGTAGGATTATCACAGCGTCAGGGAATGGCTATTGTGGTATGGATGGTGTTGCTCTATTAGGTGACTTGGTATCCTGCCCTAAATGTAGAAGCACAGGCAGAATCATAGAGGGAGCAAACAATTTTATTATCGATGGT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 57473-57929 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASA01000001.1 Gilliamella apicola strain N-G5 NODE_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 57473 29 100.0 32 ............................. GAATTTCTAATCATGAATATAGGTTTGATTTT 57534 29 100.0 32 ............................. AACATGAATATCCAAATTTAAACAATTTTTTA 57595 29 100.0 32 ............................. TTTCCTGTTATGGCTAACAGATTATTTTGAGG 57656 29 100.0 32 ............................. CAATTTGCGGTGTAGAGATGCGTATGTTCGCG 57717 29 100.0 32 ............................. ATGATCCACGGCATTCTAATATTGATGAAGAA 57778 29 100.0 32 ............................. CTTTGCTGAACATATTCAATTATTGCTTGTTT 57839 29 100.0 33 ............................. TCAGAAATTAGTATTCGACCAGATTTCATGAGC 57901 29 89.7 0 .......................T..T.A | ========== ====== ====== ====== ============================= ================================= ================== 8 29 98.7 32 ATGTTCCCTGTATACACAGGGATAAACCG # Left flank : AATGGTACTAACTAAAAATCGGTGCTTGAGTCTAATTTATATAAATTTTGTAACCGAACCACATAAACAAACAATTCTAAAAATAGAGTGATGTTGATAACAACAAAGCATTAAAAACATCTCAAAAAAATCATATTAAAAACATAAAAAAACTGGTGGAAATTTTCAGCAAAGTATTTTAATTAATAAGCAATAAGTTATAGTGATGACGTTCCCTGTATACATAGAGATAAACCGTCGATGTGTTAATATTGCATAGAATTTTTTTGCTCTTCAAAAATCGCAATTCTGTATTTCATTGTTTACCTTTTTTTAATTACATGAAAAATATAAACTTATCGGTAGAATTCCGTAGAATCTAATTTTAACTTCTATTAATTTTAATTAATCAAATAAAAACATAGTGTTATATATTATGATTTTAATGAAAAATATCCCAAAAAATCGGTAGAAATTTGACAGTCAAGATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : AATAGTAGGCATAAATTTTTCCTACAGTGCTACAATTGGTTGGTATTTGTAAAAAAAATATTGCTACCGCCATCGACCAGTTGAATGATTTGTGAGAAAAAACAAAATCGCCTGATGAAAAGCAACTATACCCTATTACCATTACAAAATTGCAGGGCGCGCAAAGGTGGGCAGTCAAGGTCTTAACGATTCAAATACCTGTTTATAACCAAATATCTATTTACACTCATTAACACAAAAAATCAGATTAATATAGCTAATTTGTATAAACTATATACATATTCACAATTGATACAATGCCACAATATGAGGATGTAGCATGATAAAGCAAGTAGCTGTTTTAGGAGATATGACCAATTATGGCGGTAGGATTATCACAGCGTCAGGGCAAGGGTATTGTGGTATGGATGGTGTTGCTCTATTAGGTGATTTGGTTTCCTGTCCTAAATGTAGCAGTACTGGCAGAATCATAGAAGGGGCAAACGATTTTATTATCGATG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1012-1895 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASA01000042.1 Gilliamella apicola strain N-G5 NODE_42, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1012 29 100.0 32 ............................. ATCTTCCCAAAACTCTACTCTAACAATTCACT 1073 29 100.0 33 ............................. TAATTTGCCAAGCTCTGGAATGTTGGTTCATCA 1135 29 100.0 32 ............................. CGGTTGTGCTAAGCATGGCCAGCAAAAGTATG 1196 29 100.0 32 ............................. ATTGAGGCTAGCTAACTATGGAAAAATTTTTA 1257 29 100.0 32 ............................. CAGTTAATACAATCCATTGGGAATAATTATCA 1318 29 100.0 32 ............................. ATAGTTGGACGGTTAAATAACAGGTGGCTATA 1379 29 100.0 32 ............................. GACTGGAGTATGTCGAACATACGGGTAGCTCT 1440 29 100.0 32 ............................. TTTTTTCCGTTGTTCTGAGTATTCGGCTTTAT 1501 29 100.0 32 ............................. AGCCAAAATCAGCGCAGTATGTTGATTACAAA 1562 29 96.6 32 ....................T........ AACAAATTGACTATTTGCAGGACGCAATCGAT 1623 29 100.0 32 ............................. TGCTAATGTTTGGCTTATCAAATTTTCTAATG 1684 29 100.0 32 ............................. ACTATATGAGACTAAATAATATCGATTGCGAC 1745 29 100.0 32 ............................. CAGCCATTGACGACCCGTGTAATCTCGATTAA 1806 29 100.0 32 ............................. GCTTTGGGATTAGGTGATCGTATTGATGAATT 1867 29 93.1 0 ..........................TG. | ========== ====== ====== ====== ============================= ================================= ================== 15 29 99.3 32 ATGTTCCCTGTACACACAGGGATAAACCG # Left flank : AAAGATAAGTTAAATTATTAGGTCCTCTAAAAGATAGAATCTAAAGCTATAGATTGTTGCACTCACGCATACTCATCAACTGGTTATTGCTATCGGCATTTGTATTTAGTTAAAGCGAATCGAATTGTAAGTAAAGCTGGGTCAATAATGTTCCCTGTGCACATAGGCATAAACCGCGTTACAAATGAACCCGTAAAACTAACCGAATGTTTTCCTTGTATATACAGGAATAAACCAGCGATGCGTCAATTTACATAGCATTTTTTTGCTATTCAAAAATCATAATTCTAAATTTTATTGTTTACCATCTTTTTAATTATATGAAAAATATAAACTTATCGGTGGAATTCCGTAGAATCTAATTTTAATTTTCATCAATTTTAATTACTTGAATAAAAACATAGTGTTATAGATGATGATTTTAATAAAAAAGAGCCTAAAAAATCGGTAGAAATTTGGAAGTCAATATTTTAATTATAAAACAGTATGTTATAATTAGT # Right flank : GAGATAAAACATGAAAAAAATAATTGCTATATCGATATTAACTTTAGTTAGTTTTAGCTCATTTGCGAATGATAATGCAAGGCGACTCATTGAGATGTTAATTGAAGAGGATATTACTATCTTGAGAACTGGAGGCGACTCTGTGTTGAGTGATTTTATACCCACAGTAAACGCCTCACAATTGATTAGTGAGTATAGCAATAATCAATACAAATATGAGCAGACATATCACAATCAGGTCATTAATATCAAAACTGTAGCATCAGGTATAAGAAGGGATTTCAGCGGCGATCCTTTTATTGTTGCCAATGGTAAAAATCAATTTGAATATGTATCACTAGAATTCAAAAATAAAGATGACGCGATGAATATTAACAATGATAGTAAACTTGATTTAATCTGTATCGGGACTAAAGATAATGTTTTGTTCCCAATTTTAAAAGAATGTGTAACGTCTGATAGTTATTTTCAGAATTTTTTAGAAAAAACTATGAATAATA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTACACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6180-5479 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASA01000032.1 Gilliamella apicola strain N-G5 NODE_32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6179 29 100.0 32 ............................. CAGACATTGTTTTATTTCTCTCAGGAAAGAAA 6118 29 100.0 32 ............................. TTCATCTTTTAAACGAATTAAATTTAATCGTC 6057 29 100.0 32 ............................. TCAGCAGTTTAAAATTAGGATGCATTATTGAT 5996 29 100.0 32 ............................. CATCTTTGAACGTCTCTCGCCCCTTCACATCA 5935 29 100.0 32 ............................. CCGACCATAGCTGAAATACCAATATTTAAAGG 5874 29 100.0 33 ............................. GCAGAACAGGGTGGATTTTGCACAAAAATGGGC 5812 29 100.0 32 ............................. CCATCAGAGCGTTTGAGCAGGCAAATTATGAC 5751 29 100.0 32 ............................. CATGTACCGAAAATTCAATAAAACAGAATTCG 5690 29 100.0 32 ............................. AAATCGATCAATTAAAATCCGAAAACGCCGCA 5629 29 100.0 32 ............................. CCGTTGAAGAAATCTACAGAATTTATAGTGAA 5568 29 100.0 32 ............................. CGACCTCTCTGCCGTTTGGTGTTGGTGAATTT 5507 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 100.0 32 ATGTTCCCTGTATACACAGGGATAAACCG # Left flank : CTCAGTATAAAAATCATAAATAATTTAAATTAACTTTATGTTTATAAAGAAAACATAATATTTAGTCAATATAAGCATTTACTTTTAAAATTGAGTAATAGATTTGAAATAACAGAGTTTACATAATGGTTTTATTTAAAAAATATATTGGATTATTTTAATATCGCTGAAATGATATTAACTAAAAACGAGTATATGAATCATAGATTATGAAAATTTGGTAACTAAGATATACAAACAAACCACTTTAAAAATAGTATAATTTTGATAACAACAAAGCACTAAAAACATCTCAATAAAACTTATTATTTTTTAACTGAATGAAAAATATAAACTTATCGGTAGAATTTCGTAGAATCTAATTTTAATTTCCATCAACTTTAATTACTTTAATAAAAACATAATGTTATAAATACTGATTTTGATAAAAAATAACCTAAAAAATCGGTAGAAATTTAGCAGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : CTTATTCAGCAACATAATCAACGGGTCCATATTGGTTTTTGTCCGAGTAATAATTGTCAAATTGTGTTAACAGCAATCAAATAGGGTGGTAAAACTGTTTACGTGAATGGGTTGATTTAAATAAATGCCCACAATAAGGATAATACTATGTTTAAGCGGCTTGGAATAATCAACAGAAAATCAGAGAGAGATAGTGTTAATGTCTCATGGTAATAAGACAATTTCGTTAGTTGTAGAGATGTATTTGTTTGAAGAGATAATAGCATGGGTCATAGTAACATTAATTACCATATCTATTTTTTGTTTATACGCAAAATATGTAAGTCCTGAAATTTGGAATTATATAGTCGCGTTTTTATTTAGATGATGTATGAACAAATCAAAAATATTAGGTGCCACATTAATTGTTGTTATTTTTGTTCTAATTATTTATTTCGGTTACAACAATTATCAGGAAAAATAGACTCAAAAACGATAAATTAGAATTAACCTATAAAATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: R [matched GTGTTCCCTATACACATAGGGATAAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 14067-13549 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASA01000032.1 Gilliamella apicola strain N-G5 NODE_32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 14066 29 100.0 32 ............................. GGCAGATCAAATTATTGGTTTGATGCCATTAT 14005 29 100.0 32 ............................. GAGTTAGCTATTATCATGGATTTTTTATGGCT 13944 29 100.0 33 ............................. TACATTTAACAGCATTTGAGCGTCACCTATTAA 13882 29 100.0 32 ............................. GCTGGCATTGAATTACCAAACGGTCAATTAAC 13821 29 100.0 32 ............................. ATCTGAATATTTCTCAAAATAGCTAAACGCTC 13760 29 100.0 32 ............................. CCCGCTCAACCGTTCGTCAGACCCGCATTTGA 13699 29 100.0 32 ............................. GCATCACTATAACTACTAGTACGATATATAAC 13638 29 100.0 32 ............................. GACAAACCGTACAAACTTTCGGACGGGCGTGG 13577 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 9 29 100.0 32 ATGTTCCCTGTATGCACAGGGATAAACCG # Left flank : AGTATAAAAATCAATAAATAATTTAAATTAACTTTATGTTTATAAAGAAAACATAATATTTAGTTAATATAAGCATTTACTTTTAAAATTGAGTAATAAATTTGAAATAACAAAGATTAACTAATGGTTTTTACTTAAAAAAATATATTGGAATACCCAAAGATTGCTGAAATGATATTAACTAAAAACGAGTACTTGAATCATAATTCATGAAAATTTTGTAACTAAGCAACACAAACAAATCACTCTAAAAATAGAGTAGTTTGATAATAAAAAGGCACTAAAAATATTTCAATAAAACTTACCATTATTTTAACCAATTAAAAAATATAAACTTATCGGTAGAATTCCGTAGAATCTAATTTAAATTTCCATCAATTTTAATTAATTAAATAAAAACATAACGTTATAAATACAGATTTTGATAAAAAATAGCCTAAAAAATCGGTAGAAATTTAGCAGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : AGATAGGAGTTTTTTATGCTGTATTTTGTTAGATTTTTTACGTTAGTATTTATTTATTCTTCTTGTTTTGTAATTCCAGCTCAAAATATTGTAAATGCTGGATTAATCATAATTTTTGATGTGACCATTTATTATCTTGTTTTTTCTAAATATACAAAAGCAGTTGTTAAAAGTTTTAATAAAGTAGGGGTAGAAACTTTTAAAAGTAACTATAAAAAAAGCAATTTATATATATCAAGAAATTATGCTAGTGCAATATATTTTGATGACGTTGAAAGAAAAATCCACTTTTTAAATCCAAGAAGATGTGTTTCTAAATTTTGTTATTCAGATTTAGTAGAGGCTGATTTTGAAAAAAATACATTAATTCTATATTTTACTGGAGAAAAAAGGCTGAGTGCACCATTCTATTATCAAAAAGAGGATTTTGGTCATTTAAATTCAATGACAGGGGTTATATTGGATGGAGGCTGAATTTAATAAAAATACATTATTTCTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATGCACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [78.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 17135-16743 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASA01000032.1 Gilliamella apicola strain N-G5 NODE_32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17134 29 100.0 32 ............................. GCAGATAAAACGAGTAGATTTAACTGACGTTG 17073 29 100.0 32 ............................. TTGCACTAATTAATCACAGGATCAATATATGT 17012 29 100.0 32 ............................. TATGGAGGCATAAAAAAAATGCGCGTACTTGA 16951 29 100.0 32 ............................. CAAAGTTAACAATTTAAAATTAGGATGCATTA 16890 29 100.0 32 ............................. CGCTCCTCTGGTATTTTTGACGCGATAGATAT 16829 29 75.9 29 ......................ACCGTTT TAGACATCACGGCTAGCGTAGGAACTGGA 16771 29 79.3 0 .............A...CT..T....T.T | ========== ====== ====== ====== ============================= ================================ ================== 7 29 93.6 32 ATGTTCCCTGTATGCACAGGGATAAACCG # Left flank : TCAGTATAAAAATCAATTAATAATTCAAATTAAATTTATGGTGATAAAGAAAACATAATATTTGGTCACTATAAACCTTTACTTTTGAAATTGAGTAATAGATTTGAAATAACATCCTTACATAATGGTTTTTAATAAAAAATATAGTTGATTACTTTAAGATTGCTGAAATGATATTAACTAAAAACGTGTATATGAATCATAGTTTATGAAAATTTAATAACTAAGTTACACAAACAAATCACTCTAAAAATAGAATAGTTTTGATAACAACAAAGCACTAATAACATTTCAATAAAACTTACTATTTTTTTAACTAAATGAAAAATATAAACTTATCGGTAGAATTTCGTAGAATCTAATTTTAATTTCCATCAATTTTAATTACTTAAATAAAAACATAAGGTTATAAATATTGATTTTGATAAAAAATAGCCTAAAAAATCGGTAGAAATTTAGCACTCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : TGGAGGAGCGATGATTGATTCAGCAGTTGCAGATAGCCTTGATGATTAAATAGAGGAGTTTACAAAGTGGAACATACGTTAAATGAAGAAGAGCTTTATGTTGCCCTTTCAGATCTATTTGTAGATAATGAAGTCGATTATGACCATATTGCCTCCGTAGCAAAATTATTTCCAACATCCTATGTTGAACATGCTTTATTTCATTATGTCGCACCTTATTGTTACCACAATGTGCTTACGCCAGTCCCCTCTGTATGCTACTTTTTTGATGAAGATGAATTATTAAGCGCAATTGATAATATCAAAACAAAAGAAAATCGTCCCATTAGTAAAATCAAAATGCGTATTTTAGCTTTCTATCTCAAGTCTAGATTTAAACATGAATGGCAAAAAATAAAAAGCCTATTATGATTATTACGTTTAAAGTCTTATTTAAACTCAATTGATTATATTAATTTCTTATAAACATAGACATGAAATCTTGTCAAAAAGTTTCAGAT # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATGCACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 67855-67402 **** Predicted by CRISPRDetect 2.4 *** >NZ_NASA01000011.1 Gilliamella apicola strain N-G5 NODE_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 67854 26 100.0 35 .......................... CCGTCCAAATCTCGCCACTTGGTGGCGTCAGTAAT 67793 26 100.0 35 .......................... CCCGCCGTTGTACATTTTAGGCTCAGAATGCGAAA 67732 26 100.0 35 .......................... CCGGCTGATTACAAAAAAATGTTTGAAAAAATTTT 67671 26 100.0 35 .......................... CCGTGATGATGAATATATTAGTGGACGTGTCTTTG 67610 26 100.0 35 .......................... CCGAGTGCCTGAATGTATGCGGTGTAATCTCAAAT 67549 26 100.0 35 .......................... CCGCTAAGGTAAATTTCATCGGTAGTCACGCCGAT 67488 26 100.0 35 .......................... CCGGGATTTACCAAACGAGGGTACTCGTCGTGTTA 67427 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== =================================== ================== 8 26 100.0 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : CGCTTATTGAAGAAGTTTTGTCTGCTGGTGGTATCGAACCGCCTCTACCACCTGATGATGTCCAACCACCAGCTATCCCAGAACCTCAATCTTTAGCCGATAATGGCTTTAGGAGTCGCTAATAATGAGTATGTGTGTTGTGGTAACTGAAAATGTTCCACCTCGATTACGTGGTCGTTTAGCAATTTGGTTACTTGAAATTAGAGCCGGAGTTTATATCGGTGACATATCAAAACCAATAAGAGAAATGATATGGCAACAAATTGTTAAACTTGCAGAAGAAGGCAATGTAGTCCTTGCTTGGGCGACTAATACAGAATCAGGATTTGACTTCCAAACTTATGGCGCTAATAGAAGGGTTCCGGTAGATTTAGATGGACTAAGGTTAGTCTCTTTTTTACCTATTGAAAATCAATAGGTTAACGTTCTTTAAAAAATTAAAAAAATTGGTAGATTTTTGGAGTGCCAATAAATCTAAATAAAACAATTATATATATTTA # Right flank : TCAGCTTTTACTCGTTTTTTATCTAACTAAAATCCTTTGTTGGATAAGTTATTGCTAATTTGCTCTAAGTCAGAATGTTCAGTTCTTTCTGAAACATTAAATAATTGAGCAAAATATTATACAGTTTTGTATCCATTTTGTTTTATTAGCAGTTTATCTAAAAAAGCTTGTCTTTCTGTTAGAATTGGATACCTTCTTGTTCAATAACAACACAATGATTTGATTATAATTAGTTAAAATAGTTTTTATATCATAAAGATCTTCAATAACTTGTTGCAATGATGGTATTGGAAAACACAATAAGGTGTAAAAGTAGATTTAATTTTTGTCTAATATCTTTATACTTATCGATAATTTGTTATAGGAAATAATATGTTTTTAATAGGTTTTTGAGATTATTTGCGTTAAAAGCATAGATTATGATAGATTTTTCTTATTTATTATGGATATTAAAATATAAAATTGTAATACATATCAAGTTATGCTCTTTCTTAAAGAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //