Array 1 4633-3690 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAWUY010000047.1 Faecalicatena fissicatena strain MSK.14.20 NODE_47_length_26304_cov_216.032, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 4632 33 100.0 33 ................................. GCATTTTTCGCTGTCCTGTTGCGTCCAGAATAT 4566 33 100.0 33 ................................. AACGGAGGCGATAGTGTTTCGGCAATCTAAACA 4500 33 100.0 35 ................................. CTGGCGGTCTTTCAACGCCTGCTGCCGTCTTTCAT 4432 33 100.0 34 ................................. TAATTGTCTAAATCAAGTTGAAAAGCGGCTCTGC 4365 33 100.0 4 ................................. TGGA Deletion [4329] 4328 33 81.8 34 .A.....TAA.C...A................. TATTAAAGTGAACCCTTCTTTAAATTCTTCTGAG A,C,GT [4309,4313,4317] 4257 33 100.0 34 ................................. CAGCCTGGAACGTATGTGATTGCCGAAGAAAAGA 4190 33 100.0 36 ................................. AGAATGTGACGTATACATTCCAAAACAGCACATCCC 4121 33 100.0 34 ................................. GACAGCGTTCAAGATCTTGGCTAACCGATAGACT 4054 33 100.0 33 ................................. AAAAATCAGGTGCATAAATAATTTTACTGGTTT 3988 33 100.0 33 ................................. CACTTGACGGCGAGCTGACCGACCAGGAAGGCA 3922 33 100.0 34 ................................. ATTTAATAGTTCAATCGGTGCATAAAACAGTTAT 3855 33 100.0 34 ................................. TGGAAACCAGGAGAAAAAACATTCAAAGTAAATA 3788 33 100.0 33 ................................. ATGAAATTTCTATTCTGAATACAGCAGAACCGA 3722 33 93.9 0 .........................A.T..... | ========== ====== ====== ====== ================================= ==================================== ================== 15 33 98.4 32 GTCACGTCCCGTAAGGGGCGTGTGAGTAGAAAT # Left flank : GACATTGAGAGCTATCCACCATATCTGCAAAAATAGGTGGTGAGATAAAATGATGGTTTTAATAAGTTATGATGTTAGTACTGTCAGTGCAGCAGGAAAAACCAGGTTAAGAAAAGTGGCGAAAGAATGTCAAAATCATGCACAACGAGTACAGAATTCTGTTTTTGAAGCTGATTTAGATTATTCCTCTTTTTTGAAATTAAAAGATAGTTTATTAAAATTAATTAATCCAGAAGAGGATAGTTTGCGATTTTATTATCTTGGGAACAACTGGAATAAGAAAATTGAACATATAGGTGCTGAGAAAACATATGATCCAGAAGGCGTAATTATTATTTGAAGGTAGCGAAGGTGTGATGATTCAAAAACCACTTGAGGTTCGCCTGAAAAAACATTATAATAAATAAGTTATATATGCGATATCATATAAATGATATCAGCAGAAATAAGTCCGTCCCAATATGTGGAAATGTTCCGTTACATAAATACAAAATGTAGCG # Right flank : ATCTGCTGGAGTAGTGTTTTAGAGACTATAAAGAAAAGTCTGTAAGTAAGATTCTTCTATGATAATGCAAGGCGAAAAGTTTATTTATTGAGCTTTTCGCTCTTGTTTTATATATAACAGCTATAAATTTGTATGTCAAGAGCAGGCGAAAAATCCGCCGGTCTTGCTATATTCTGAGTCGCCTATTCGGGCAGGCGTCCTTCATACATAATACTCAGTTCCCCATATACCTGTGCCCGGTTGCGAACCGTTGTTGTCCATTTTTTCGTTGCTTTAAAAGTAGCAAGGTATAATGCTTTTAGGAGTGCTGTATCACTCGAAAAAACGCTTCTCTGACGGTTCAGCTTACGATATGTGGAATTCAGGGATTCAATGGCATTTGTCGTATAGATCACCTTTCTGACCGTTGCTGAAAACTTGAAAATAGGTGAAATTGCATCCCGGTTATCCTTCCAGCGTTTCATGGAATTCGGATATTTTGGTGCCCATTTTTCTGTTAC # Questionable array : NO Score: 3.00 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.17, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGTCCCGTAAGGGGCGTGTGAGTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 1 16185-14639 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAWUY010000055.1 Faecalicatena fissicatena strain MSK.14.20 NODE_55_length_23271_cov_256.702, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 16184 35 97.1 37 ..................................T CCCTGTGCCATATCTTCTGTGCTAATCATTCCAGCTT 16112 35 97.1 38 ..................................T CATTTAAAAATCCCTACCATTGGCAGGGTAGAAAGTAG 16039 35 97.1 39 ..................................T CAACTGCTCTGTAAATCTGGTACTCAATGCCACCTGCAA 15965 35 100.0 37 ................................... CTAACATCACGGCTTTCCAAACGTCAAGTTCGGAATT 15893 35 100.0 35 ................................... CACCGGTAAACACTTCGTATAGACGGTCAACGTTG 15823 35 100.0 39 ................................... CATAAAGCCTGTCCGTGTTAAGGTTATACCATGCACCGC 15749 35 100.0 35 ................................... TCCATATCTTCACTACTAACCATTCCTACCTCTTT 15679 35 100.0 37 ................................... TGAGTTCTTCAATCTCAGCTTCGAGCTTTTCAATCGA 15607 35 100.0 38 ................................... TGTTCTAATACAAAATACGCACCCATCTTCTTTATCAA 15534 35 100.0 35 ................................... TGACATAACTCCAACGTGAGTTATCCGTCTTCTTT 15464 35 100.0 35 ................................... TTCTTCTTCAGATCCGCCCATGTCTGGATGATTTT 15394 35 97.1 40 .............A..................... TTTGATGTCGATTAATTTTTGACATGAAAAAAGAGCTGGA 15319 35 100.0 38 ................................... TACACTTTAATGCCCTTTAATAAATCTCCGCCCTTGCG 15246 35 100.0 36 ................................... TCCTTTCTTATTAGGCGTTTTTGATTTTTTATTTGG 15175 35 100.0 34 ................................... CTAAGCGTCCCGTTCATTCATATCATTTCTTAAA 15106 35 100.0 37 ................................... CACAAACCGGACATCATATGGATTACGGTAACGGATT 15034 35 100.0 38 ................................... CAACATTGCTGATCGTTTTTATGGTGCTGAAACTGATC 14961 35 97.1 41 .............A..................... CTTGCTACCGCAAGGAATAAAAAATAATTTTTAGTTATCCT 14885 35 100.0 36 ................................... CCAAATATTTCTGTGATAATATGAAATCAAGGAATA 14814 35 100.0 37 ................................... CACCGGTAAACACCTCGTAGATCCGGTCAACGTTCAC 14742 35 97.1 34 ..............................A.... CTTGTAACCTTTTTCTCGTCTTTCTTCATCATGT 14673 35 82.9 0 .............A.A..T..GC..........T. | ========== ====== ====== ====== =================================== ========================================= ================== 22 35 98.4 37 ATTAAGAAATATAGCTCCCCGAGAGGGGACGGAAA # Left flank : TGAGCAAATTTACAGGTAATCATACAATTTCAGATCGTACCGTTTTTTTAGGCGGTGGCAGTGGATTTGTATCAAAAACTATGATATACTCATTATTTGAAGGCAGAGAAGCAGTTGCGGTTACAAAAGATATTTTTGAGAAAACAAAGGTCCCAAGAGAACACAAGCATGAAAAAGATTTGCTATACGGTGTCTCACCGCATATTCTCAAATGTACTCGTTATCAGGGAAAAGAATACATGATGGGACAGTGTGAGATGACGTTGCATCCAAAAGAATTATAGAGTGCAAAAGAATCATAGAGTGCAAAAGAATCATAGAATACAAAAGAATCAAAGAAGCAGAAATCCGGGAATTTTGCAGGCGTTTCCCACGCACCGCATAAACACTGGGAAAACCTGCAGAAATTCATTCCAAAGAAAGCTATATTTCCAGAAAAAACAATTTGCCACGCAAAACGGCAAAAACCCCCAGAAAACAAGCGGGGTCCAAGAGATGGT # Right flank : GGGATTTCTTCTATCTCCAACTATTGGCATTGTTTAATTAAATTCTCCGTCAGGGGACAATTTGCAAAGGGGGGTTTTTATGAGTTTGTTGTATGTAAATGAAAATGGTGCAACGATTGGTGTGGAAGCAAATAAGTGCGTGGTTCAATATCGAGATGGCATGAAAAAAATGATTCCGATTGAATCACTGGAAGGTATCACGATCATGGGACAGTCGCATCTGACAACAAAGTGTGCGGAGGAATGTATGTGCAGAGGAATCTCTGTCGCATATTTTTCAAAGGGCGGTAAGTATTTTGGGCGACTGATGTCCACGGATCATATCAATGTTCAAAGGCAGAGAAAACAAAGTGCTTTGTATGATACAGATTTTGCGATGAAACTGGGACAGAAGATTTTGAGTGCAAAGGTGAAAAATCAAAGCGTTGTTTTGCATCGCTATGAAAAAAGCCGTGAGCTTTTGCTGGATGAAGAACAGAAAATGATGCGGATATGCAAAG # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAAGAAATATAGCTCCCCGAGAGGGGACGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //