Array 1 2964520-2963597 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001489.1 Frankia sp. QA3 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================== ================== 2964519 29 96.6 32 ............................T GCGATCATGTCGACGATGACCTGACCCACCTT 2964458 29 96.6 32 ............................C CAGCGCCGGTGTTCGGGCCACACGTAGGCGTC 2964397 29 96.6 32 ............................C GTGCGCTGCCCGGCGGTAGCACGCAGCGCCTC 2964336 29 96.6 32 ............................C GCCTCGCGGTTGTCGTCGATGTACCGTGCGAG 2964275 29 100.0 32 ............................. TGGGGCGGCGAGTGGTCCGCGGACCTCAAGAC 2964214 29 100.0 32 ............................. ACGGTCACCCTGACCGGTACGGACGCGGCCGG 2964153 29 93.1 32 ................T...........C GAGCAGATGAATGCGTTGCTGAGCTGGATTGC 2964092 29 100.0 32 ............................. GCGACGAGGTGCGACCAGACTTCGGGTGGCTG 2964031 29 96.6 14 ............................A TACGGTGACCGGTC Deletion [2963989] 2963988 29 93.1 32 ..A....................T..... CTGGAGTGCGTCCACCTCCGTCGTGGGGGCCG G,TA,C [2963964,2963980,2963984] 2963923 29 89.7 32 ............T.......A.......C GTCCGACCGAGTCCGCCCTTGGAGTCCAGCGC 2963862 27 89.7 88 ..........T........--........ AGCTCGCTGCGATCCCGGGGCGGACCCGGGGGTCGTCCCCGCGCGGAGATCTTCCCTTGTCCTCGCCTCGCGCCAGGCTTGCCTCTGT 2963747 29 86.2 32 .............A..A....G......C GTGTACGCGACGACGCAGTCCTACCCCGCGCG A,C [2963728,2963732] 2963684 27 79.3 32 C............AT.....--......T GGATTCGTCTTCTGGCCGGCTCGTCGGAGCGT 2963625 29 72.4 0 T............A......A..TCGGG. | ========== ====== ====== ====== ============================= ======================================================================================== ================== 15 29 92.4 35 GTCGTCCCCGCACGCGCGGGGATCTTCCG # Left flank : CTCCGGATGCACGAAGTCGTCGGGAGCTGCCGGGGCCTCGCGGCCCATCTCGCCGCGCACGCCGACGATCCCATCACCGCCCGCCTCTACTACCCGTTGCACGCGGCGCTCACCCAGGCCGGCTTCACCCCCGACGGCGCCGACCGGGTGCTGCGCACGCTGTTCTTCTACACCTCCGGCGCCCTGTTGACGCCCGCGTCCGACCCGGCCCGCGAGCGCGCCGCCGCCGACTTCGCCGCCGGCCTCGACCTGGTGCTCGACGGCGTCGCCCGCGCCCTGCCCGCCAAACGCGAAACCTCGGCCTAATTCACCTACCCGCGCCGGATCCGCTTCCCGGCACCGGCACAGCAGCCAGACGCATCCCCTCGCCCGGCCTACCCGCCCCTTTCCAGCCCGCGCGACTCCTACGGGACGCGGCAAGGCCGGCGAACGTCCCGATTCCCGCGTCCCTACCGATCCAAAGCGCGCCACACTGTTGCTAAAGTCCCAGCTCAGCAAGT # Right flank : TATCCGAGGTGCCACACCAGACCTTTCTGGTATGTGTGGAGGTCGTCTCCGGGAGTGATGGAACTCTGTGGAGTATTTCCGTCTTGTATTTGTAATTTGGTCGAGCGATATCTCAAGGAAGGTTGTGAGCGTGGAGAGTTTGGCGCTGGGAGTGGTGTGGGGGAAGTCGGCGGAGAATGGGGGTGGTTCGATGCATCTTCTGCTCGGGCATCTGCTGGATACGGCCGCGGTGGGGGAGCTGGTCTGGGATCGGTATCTGGCGCCGGTGATCCGGGAGCGGCTCGACGCGGTCAGCGGCGGGCAGGGGCGGGCATTGTTCGCGTTGGTGTGCGGGCTGCACGACGTCGGAAAGGCGACGCCGGCCTTTCAGATGAAGGACGACGGGCTGGCGGCACGGGTCCGGGTGGCCGGTTTCGACTGGAAGGGCGTGAGTCCGCAGCAGGGGCGGCGTTGGCACCATACACGCGCCGGTGCGGTCATCCTGCGTGACTATCTGCCGC # Questionable array : NO Score: 4.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:-0.41, 8:1, 9:0.31, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACGCGCGGGGATCTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCATGCGCGGGGATCCTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2966676-2966397 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001489.1 Frankia sp. QA3 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 2966675 29 100.0 32 ............................. CACGGCCCGTCCGGCGCATTCACCGTGTTGTG 2966614 29 96.6 32 ............................G CCACCGTGAGTGTGGGCATGACGCCATGCTCG 2966553 29 100.0 38 ............................. TCGACGTCCTCGACCGTTTCGGCCGCCGCAACCGACCC 2966486 29 96.6 32 ........................C.... CTGTACCGCGATCACCGCGACGGCACGGGTTG 2966425 29 86.2 0 ..............T......G..A...T | ========== ====== ====== ====== ============================= ====================================== ================== 5 29 95.9 34 GTCGTCCCCGCACGCGCGGGGATCTTCCC # Left flank : CCGTAGCCAGGGTGTCCTGGCCTCGCGCGGAGGTGGTCCTGTCTCCGGTAGCCCCGCAGGTGGGGTAGCGCGCTGCCAACGCCCACGCCACCCCGGCGGCCGTCCACGATCCTGCCGTCATCGTCGACCACCCGCTGCCTCCCAGTGCTCGACGGCCCGCTCATTGCGACAGATTTGGCAAACATGCCCGGCCTGTCTGGGGAGGAACACCGTGATCCCGAAGTCGTGCCGGGGGTCAGGCTGGGGCCGGCCGGGGCGGTTCCGCGGAACCGCGCCGGCGAGCGTGACCGCTGTGAACGGCGGGCAGGATGTCGACGCGACCCTGTGCCGGTCAGCGGTGTGGAATGCCAATCCAGCCCGCGCGATCGGGCGCGTCGACGCGGGGTGAGCTGCGCGCCAACCCACATCCGCCTGTTCGACCGCGTCGATCACACACCGATCGCTGCCTCCGACCGATGCAAATCGCCCCACCCGCTTGCTAAAGTCCCAGCTCAGCAAGC # Right flank : CAGGGGTCGGTGGCAAAGTCACGCAGGATCCTGGCGAGCTCGGCGGGCTGGTCCAGGGGGATGAGGGTGCGGGTGTCGGCTACCTCGACCAGCCGTCCGCGGGGGAGGAGCTCGGCGAGGCGGCGGCCGTGCTCGGGCGGCATCACCCGGTCCTCGGCGGCCCAGACCACCAGTGCGGGGCCGGTGAAGCCCGGTAGGTAGGCGGGCGCGTCGAGCAGGAGCTCCCGGGCCGGGCGCAGTGAGCGCAGCACCCGCACGGTGTCGCGGCGGATGCCCCCGCGGGTCGCGCCGCGGCGCAGCAACGGTCGTACCCACCGGGCGGTCGCGGCGTCCCCGCGGGCAGTCAGCCAGCCGAAGGCGATCGGCGCGCGGCGCATCGGCCGCAGCCGCATCTGCTGCATGACCAGGCCGAACAGTGGTGGCGGCAGCGTGCCGGCCAGGGCCAGCGTCCGCCCGGTCAGGCTCGGCGGCATGTTGTCGAACGCCTCGCAGGAGACGAG # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCGCACGCGCGGGGATCTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGTCCCCGCATGCGCGGGGATCCTCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3877114-3877342 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001489.1 Frankia sp. QA3 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 3877114 30 100.0 36 .............................. CGGGCCCAGCATCCGGGTCGGCGCGGACGAGCTGCG 3877180 30 100.0 33 .............................. GCCCGACGTGCCGGCGCCCGACGTGCCGGCGCC 3877243 30 100.0 40 .............................. TGGGCCTCGGACAGGTACACCGCCTCGACGGTCTGCGGGC 3877313 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 4 30 100.0 37 GTTGCGATCCCTCCAGGGATGATCACGAAC # Left flank : GGCGGCGTCGGCGAGGTCGTCGGCGGCCCGGCAGGCGGCGTCGAGGATGCCCAGCAGCGCGAGGGCCTGGCGGCCGAAGGCATCCTCCACCCCGCCCGGCTGGCGCAGTGCCGGTGCCCGCAACCCGGCGCGGATCATCTCCACCGACCCGTCGATCCCCCGCTTCCGGCCCGCGCGACGCAGCGCCGCGGCGAACCGCGGCCGCGAGCAGCGGGCGGCCACGGCCGGGGTCGGCGCGACGGCCAGGACCGCGCGGGCAACCCGGTTGGCGACCCCGGAGGGCTTGCCGGCGAACAGGGCCAGGAAGGCGGGGTAGTACTCGCGGAGCAGGGAGCGCAGTTCGTTGGCGATGCGGGTGCGGTCCGAACCCGCCGCCCGACGATCAAGGTGTTCCGCGGAACCGCGCCGCGCCGTCGAACGCGAGCCCGCCGTCGCGACGCCCCCGACCCCACGACCACCATGCGACCTGGCCTACCCACACTCGCAGGCACGACCGACGG # Right flank : CCCCATAGTAAAGCCGCAGGTCAGGGAGGATGCCTGAGGGGCGTACAACATGATCGTTGCAGCGGACCGGCGGTGATGCAACTGCCCAGGTCAGGGCGTTGATCCTTGCAGGCGAAGGTAGGCACTTTCCTCGGCCTCGCGTGTTCGGTCCGCTTCCCCGTGCGGTTCAGGCCGCCGGATCGGTAGGCACAATCATCGACTATCAAGGTACTGATATATCGTCGGGATATGACAGTCATCCCCGAGAGTCATCGTGATCTGCTGGAGCGGCCGCTGTTCGGGCATCTTGCGACGATCCGGCCGGACGGCACCCCCCAGGTGAACCCGATGTGGGTGCTCTGGGACGGCACCTTCCTGTGGTTCACGAACACCACGACCCGGCAGAAGTACCGCAACGTGACGGGGACGCCGCAGGTGGCGGTGTCCGTCAACGATCCCGAGGCGCCCTACCGGTACCTGGAGATCCGCGGCGTCGTCGAGCGGATTGATCCCGATCCGAA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGATCCCTCCAGGGATGATCACGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.27 Confidence: MEDIUM] # Array family : NA // Array 4 6963301-6962531 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001489.1 Frankia sp. QA3 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 6963300 30 100.0 35 .............................. GCGGTCCACACCCTGTCGAAGACGCCGCGGCAGTG 6963235 30 100.0 40 .............................. CTGCTTTTATTTTGCTGCGTTTTCGGGCCGCTGCGTGGCG 6963165 30 100.0 39 .............................. CGATGCTCCTGCTCGGCCTGGCGACGGTCGTGTGGTGCG 6963096 30 100.0 39 .............................. GCGTGCGTGGCGCGCAGGGGCCGTATCGGAGCCCCTCAG 6963027 30 100.0 39 .............................. ATGTACGTCGCGTCGATGTCGCCAACCACGTTGGCCAAC 6962958 30 100.0 41 .............................. ATCACCAGATAGAGCGGCGGGACCGTTGCCATCACGTCGCT 6962887 30 100.0 39 .............................. GCGAGGCGGTCCGTGCCGATCGCGGTGGAGACCGTACCG 6962818 30 100.0 33 .............................. GACGAGGGCACAACGGTCACAGATCCGAGTTTT 6962755 30 100.0 38 .............................. GCCCCCAGGGCGAGCCGGCGGAAACCGTGTTCGTCCGC 6962687 30 100.0 33 .............................. GGGGCTACCGCCGCCTATGCCGCCGGGGCACGG 6962624 30 100.0 34 .............................. CGGCTGCCACTGCGGTGGTCGGGGTGGGGTTCGC 6962560 30 93.3 0 ..........G..............T.... | ========== ====== ====== ====== ============================== ========================================= ================== 12 30 99.4 37 GTCGCTGATCATCCCTGGAGGGATCGCAAC # Left flank : GTTTTCCACCGCACGCTGAAGCGAAAGGTCTCCTACGAGGAACTGATCCATCTGGAGGCGCTCAAGCTGGTGCGACTCTGTCTGGAGGGCACCCCGTACACGCCGTTCCGGCCGTGGTGGTAGCGAGATGTTCGTCGTTCTCGTCTACGACACAGCCGCCGAGCGCAACCCGAACGCCCTGCGCACCTGCCGCAAGTACCTGCACTGGGTCCAACGCAGCGTCTTCGAGGGTGAGCTGTCCGCCGCCCAGTACCGCGCCCTGATGACCACTCTGCGCGACCAGCTCGACCTCACCTACGACAGCATCCGCGTCTACCGCACCCGCTCCCCCGCCCTTGTCGAAACCGAATGGCTCGGCGTCCCCCTGGGCAACCAGGACTCCGTCCTCTAACCAAACGATCAAAACCCTGACCTGCACGGTTGCATTACCGCCGAACCGCCGCAAGATCGCCCCCTCACCCCCATCCCACGGCGTCCCTGACCTGCATCTTTACTATGGG # Right flank : GCGGCCTGCCGGACGGCCATCGGAGGCCAAGCTCCGACCACCATCTCGACGATCATGGGTTCGGTAGCGTCAAGCGCCGACCGCGGCCGATTGCGGTGCATTCTGTGCGGTCTGGGCTCGCAGACTGTGTATCGCGTACCGCAGTGCGGCCCCGCCCCGGCGATCATGGTGTTCGGCGGAGCTGCACGCCACGGACTGCCTCCAAAGCCAAGTACCTTCGCCCATGGTCCAGCGATCCCGCGGTTCCGCGGTTCCGCGGAACCGCGGCCCGTTTCGACGGTGACCCGGCCGTCGACGAGCACTCATGGATCGAGTCGAACGACAGGGTCAGGGCGATCGTCGGGACCCGCTGAAGCGCGGCTCGGTGATCAGATCGGGTGGGGTGAGGTGGGCGGTGAGGGCGGCGGCTGTTGCGGCGAGCAGGGGGGCGGCGCGGCGCGCGGCCGGCACGGACGGTGCAGTCACGGAAAGCGCCGCGGCCGGGCCGGCCTCGCCCATCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTGATCATCCCTGGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 5 6973197-6972443 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001489.1 Frankia sp. QA3 chromosome, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 6973196 30 100.0 35 .............................. CGTGACGATGCGGACACACCCGAGGCCCCGCCACA 6973131 30 100.0 38 .............................. AAGGTCGCCAGGAAGTATGTGCAGCGTGGTCAGGTGCT 6973063 30 100.0 35 .............................. GCTCCCGATGAGCCAGGCCGCGCGCGCTGCTCGAG 6972998 30 100.0 36 .............................. CCCTGCTCGCCGCTCGGCTCAAGCTGATTTCCATCG 6972932 30 100.0 34 .............................. CGTTCGACCATGCGCGGACCCTCGACGACCGCGT 6972868 30 100.0 39 .............................. CCGCGTCCAGCAGGGCACGCAGACCCGCAACGGTCAGCT 6972799 30 100.0 40 .............................. TCCCGCCTCATCGTCAGCGACGGCGCCGTCCTGAGACGGT 6972729 30 100.0 33 .............................. TAGCGCCAAGGGGGAACGGTCGTTGGACGACAC 6972666 30 100.0 34 .............................. TGCCCACTCTCCCCCCGCCCCCCGGCTGGCCCGC 6972602 30 100.0 36 .............................. CCGGTATGACGAGCTGATGCACGCCCACCCGGCCAC 6972536 30 100.0 34 .............................. CCGGCGGCGGCGAAGACACCACGACGGGCTCGGC 6972472 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 12 30 100.0 36 GTTGCGATCCCTCCAGGGATGATCAGCGAC # Left flank : CGCTCACCTGCTGCGAAGCTCCATCTCGGGGGGTCACGGGCCAAGAGCGGGGCACTGCGCCATCTGTCTGGGCAGGGTCGGGTGGGCTGCGCCACGACGCGGCACGGCACTCTGGCAAAGAAGATGGGGCGATGAACTCCGACCCCCTCATGACCGTCCTTGAGGTGGCCGATCACCTCAGGATCACTCCGTCATCCTGGCGAGCCAACGTGGCGAGCGGCGACGCCCCCGCCGCCGACGACCCCGACACCGATCAACCGGAGAATCGCCGCAGGCCGCGCTGGCGGCGCTCGACGATCGAGGAGTGGAACCGGACTCGACGTCGAGGGGGGCGCCCGCATCCGGACACCCCACCGGTCGCTCCCGCCTGACGACCATGTCCGAGGCCGGTCCGGCGCGGTCCGATGCCGTCTTGGCACCGCTTCGACACGTCTTCGGAGAACACGCTCGGGTGGCAGGTGCCAGTGAGGTGGCGAGAACATGGCTGCGCCACTGCGCGA # Right flank : CCCATAGTAAAGGTGCAGGTCAGAAGCACTGTGGAGTGGGGGCGGAACGGCGATCTTGCAGCGGTTCGGCGGTAGTGCAACTGCGCAGGTCAAAGGCATGATTCGGGGTGGGTGATCGCAAAGGGCGGATGGTCTCAGGGCTGGGGCTTCTGGACCTGCGGCCTGCCTCGCGACGCCGCGCGGCAGACGTGAACCTGCCGAGGAGTAGAGCATCCGGGGACTCCGGGCGTCCGACCAAGGGACTGATCACCAGGCGGAACGGGCACTGGGTGGTCCACGAGTGGAGGGCAAACCTGGCGCCGCGGCGCCATACGATGCACGGACCCCGGTTGCGACATGGGCTTGAGCGGGATTCAAGCTGGCTCTGAAGCAAGATACCCAGAAATAAGTGCAGGTCAGGCAGCATATCTGCCCCATGGGAGAATCGGCGGTCGTCTCCTCGCCGGCCGATCGGGACAGGGTCTTCCTTGGCGTTGTGGTGGTCCTCCGACCCCCGCCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGATCCCTCCAGGGATGATCAGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.60,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 6 6976042-6978004 **** Predicted by CRISPRDetect 2.4 *** >NZ_CM001489.1 Frankia sp. QA3 chromosome, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 6976042 30 100.0 38 .............................. GACCACTGGCCGTTCGCGGCGATGGACTGCTCCCATGA 6976110 30 100.0 36 .............................. GGGTGGTCCCGACGATGGTGCAAACCCCCGCCTATG 6976176 30 100.0 36 .............................. GCGACCGTCTCCGCGGTCGCGGGCAGCGGCGTGCGG 6976242 30 100.0 34 .............................. GCGGGTAGCGCCCGCTCGATCAGCTCGACGACGT 6976306 30 100.0 38 .............................. CAGGTCTACCCGGCCAGGGCAAGACCCTGACGGCTGTT 6976374 30 100.0 34 .............................. TTGGCTTCATCCTTGGGTCATTTGTCTACGGCTG 6976438 30 100.0 37 .............................. GCCCTGGTGGCGTATGCCATGGCGTTTCTCCTTCGGG 6976505 30 100.0 36 .............................. AGGTACTGCCCGACGACGGCCGGTGCAACCTCCCGG 6976571 30 100.0 34 .............................. CGAGCAGCGCAAGCGCGGCGTTGCCGGGGCGTAG 6976635 30 100.0 37 .............................. AACGCTGCGGCCTTGACCTGATTGTCGACACCATCAG 6976702 30 100.0 39 .............................. CCGAGGACGACGTTGGCCAGGCGCGCCGAGGCGGGCAGG 6976772 30 100.0 35 .............................. GGGGACATCCCGTCTCCTCTGTTGAGTTGGTAAGG 6976837 30 100.0 35 .............................. CACGCCAGCGTGTCAGGTCAGATCTGACAGAGTGG 6976903 30 100.0 35 .............................. GCGACGCCTCCTTGATCTCCCGGACGCGCTGGCGG 6976969 30 100.0 36 .............................. AGCAGCTCGCCGGCGGCGATGGCGTCGGCCGGGGTG 6977035 30 100.0 40 .............................. TTGCTCCTGTCCTCCGCCCCGTGGGCGGGAGATGGGTGGG 6977105 30 96.7 37 ...............C.............. GGGTCGTACCAGCCGATGATGACGCCGTAGATCAGGG 6977172 30 100.0 40 .............................. GGCTCCAGGTGATGCTGATCGGGAATGTCTGGCCGGGCGC 6977242 30 100.0 37 .............................. ATCTCGCCCGCCGGCACGCAGAGCTGGCCGCGGCCGG 6977309 30 100.0 36 .............................. CCGCCTACGAGTGTGCGGCGGAGAACCGGTGATCGA 6977375 30 100.0 34 .............................. TCATAACGCCTCCAACGGGGCGGTAGGGAAGGAT 6977439 30 96.7 37 ..............T............... GGCCGCCCCGAAGCGCACTGATGGGCACCTCAGCCAC 6977506 30 100.0 39 .............................. GCTGTGCCGGCGCCAACTAGGAAGCGGGCAGGGCTTGCC 6977575 30 96.7 40 C............................. ACCCGGGCACCCCGGCCGCATGGGGCTGCTGGGAGGCCGG 6977645 30 100.0 37 .............................. AGCGGTACCTGCGCGCGGTCGACTTCGACATCGGACG 6977712 30 100.0 35 .............................. CGCAACGTCTCCTCACGGGCCGCCGCCGCAGCAGG 6977777 30 100.0 35 .............................. CGCAACGTCTCCTCACGGGCCGCCGCCGCAGCAGG 6977842 30 100.0 39 .............................. ACGAAACTCGCGGTGGTCTTCGTGCTGCTGGTCGTGGGG 6977911 30 100.0 34 .............................. CCGTGCCCTTGGCCAGCCCGTATACCTCCATGAG 6977975 30 86.7 0 ....................A.GG...G.. | ========== ====== ====== ====== ============================== ======================================== ================== 30 30 99.2 37 GTCGCTGATCATCCCTGGAGGGATCGCAAC # Left flank : CGGCATCGCCTACCGGACCGTCAGCGATCTCCCCCCGTCCACGCTCTCCCTGGCCTGGCTCCAGGACTCCCGCTCGCCGGCCGTCGCCGCCTTCCTCCGCGCGGCCACCGCCGTCGCGAAGGCCGCCCAGGCGGACGCGGAGCCGCCGCAGCGGGCGATGATGTGAAGCCTTGCGTCACCTGACGGGAAAGGCTCTTCGAGCCTGGCGATGGCGAAGGCACGGGCTGTCGTTGCACAGGTGGCACCATGCGTCGATTGAGTGGCCATACGCGGCGCTGGTGGTGCGCAGCGGCTGTAGGGGCCGTGCTTGCGGCGTCATCGGCCAGGCGCTGGGCACCTACCGGGGCACGCGGCAGGGAGAGCCGGTCCATCTTGAATGCTCACCACGGCCTTTTTCGATCATGGCTCTGACCTGCACAGTTGCATTACCGCCGGACCGCTGCAAGATCGCCGATATCTACCCGGTGCGCACCACCCTTGACCTGCACCTTTACCATGGG # Right flank : CGGAGTGGCGTGCCAGCATCCGATGGTCTGGCGCGCTGCGGCTGTCCTCCATGGAGGGACTGCGGACCCGAACGGGGACGGGTCAGCCGGCGGGGGAGATGGACTGGATGTTGGCGATGGCGAATTCGCGGTCGTCGTTGCGCAGGTGGCACCAGGTGTCGAGCCAGCGGCCGAACATGGCGTTGATGGTGATGCGGCGGATGGTGCGCTTGCCGTTCTTGTCCCGATAGGTGATCACCACGTCGCCGCGGGATTCGACGGCCTCGGCGAGCAGGGCGAGTTCGCCGTCGTTCAGGCGGTCGTTGAGGCCGGCGAGTTCGCGGACCAGGGGGCTCGGCGGGGGCACGCCCTCGTCAACATCAATAAACAGCCGCGTGATGAGTTCCTCCGGGGTCACCCTCCGGGGTGCGCCGTCGGCGGCTCGGGGCCGGCCGCTGCCGGTGGGAGCCGGCGAGGCGCCCGGGGGACCGGACCGGCGACTCCGGGGGCTGCTCGGGGAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTGATCATCCCTGGAGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.60,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA //