Array 1 381-54 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016482.1 Synechococcus sp. PCC 7117 plasmid unnamed5 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 380 37 100.0 37 ..................................... CTTTGCGGTAGGGGACGAAGATGAAACGATCATCGAG 306 37 100.0 36 ..................................... TCATTGCAGCCAAATTTAGCCCGTTCTAGCTCTAGG 233 37 100.0 33 ..................................... CTTCGAGATATTCGATCCCTTTCCCCTGTACTT 163 37 100.0 36 ..................................... CAGAAGGGTGAAGATAAATCCGCGCTTCAATGAACA 90 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 100.0 36 GTTTCAGTCCCGTGGTCGGGATTTAGTGGTTGGAAAG # Left flank : GCACTCACTTATCTTTGATGCAGTGACCCTTAACCTACAAATCATTGGAGAAGCCAGCAAGAAAATCCCAGAACAAATCCGAAATCAGTATCCACATATTCCATGGCGAAACATCATTGGCCTGAGAAACATTATTGCCCACACATACTTTTACTTGGACGAAGACATTCTTTGGCACACTATCCAGCATGAACTGGAACCACTACAAAAGTGCATCCAGGAACTCTGGGATAAAGAAGCATAACTAACCAAGGCAAAACAGAAAACAGTTTAACCTTTGTCCTCCAACTTCCCGATGCAGTAAACCATAGTCATCATCGACATCAATGTCCAAGTACCATCAAAGCCTACGTTAATTCGATGGCGGAATTCAGCCTCAGACTCATTGGCGTTATATGCCTTAATGAGTTCCATGTAGTCACGGTAAACCCAGTAACTCCAAAAGATAGTAGAGGCCAGAAAGAATAAGGTAAAGAAACGAAACAAGTTTTAAGAAATAT # Right flank : GTGTTAGAATTCCTGGTTCCTTGGCGGGTTAAATTGTCGTTTCAGTCGTCGTGT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGTGGTCGGGATTTAGTGGTTGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.00,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 2 236389-237180 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016482.1 Synechococcus sp. PCC 7117 plasmid unnamed5 Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 236389 36 100.0 36 .................................... GCTTAGAATTTGACCAGTTGGTCAATAAGCCATTGC 236461 36 100.0 39 .................................... AATACAGAACCCTTTTCTGTTCCTTTACATCGTCATGAT 236536 36 100.0 40 .................................... TTAGTACACATTGAATATGGAGGTATCAACATGTACTTAC 236612 36 100.0 43 .................................... CCATTGTTACAGTGCAACAAGTTGATTACATCTGTGGCAACAG 236691 36 100.0 40 .................................... TCAGTAACAGCTGTGTCTAGTAGATAGTGTCTGTAGGTAT 236767 36 100.0 40 .................................... TTAGATTTTCTAGAAGAAAATTATCAATTTAATTTAATAA 236843 36 100.0 39 .................................... TTTTCAAGTATTATGGATGGACGAAAGATTTAGATATGA 236918 36 100.0 39 .................................... CGGTCGAGCTCGTCCCAGTCCACCGGGGTCGAGACCGGT 236993 36 100.0 38 .................................... AGTTTGTAGATAGGTTCAATCTCTACATCTTCAAAGAA 237067 36 100.0 40 .................................... CTCCTGCAGGTCTTTAACTTGTTGTTGGAGTTGGACAAGA 237143 36 83.3 0 .........................C....ATC.TA | AT [237167] ========== ====== ====== ====== ==================================== =========================================== ================== 11 36 98.5 40 GTTTCTCTTTACTTGAGAAGCTAATAGATTGGAAAC # Left flank : TTTATCGTCCAGTGTTGGGTTATGCGCCTTACGAAATTCGTTAATGTTTTATCTGGTCGCCTATGACATTAGTGATAATAAGCGGCGCAAAAAGATCGCGGATCTGCTGGAGGGTTATGGAGTGCGCGTACAATATTCTGTTTTTGAATGTCATCTGTCACCCAAAAAGTATAAAGAGTTGAAAAAACGACTTTCGCGTTATTACAAAGAGGATCAAGGGGACAGTTTGCGGTTTTATCCGATTTCGAGTCATACTCTTTCCCAGGTGGAAATTTGGGGGTTACCTTCTCTGACCGATCCACCTTCGTCAATGATTATTTAGCGACCGATTTGGAAAATGGCTGAAACAGTATTAACTTCGTGCAATTGCTCGAAAGCTTACCTGGCAAAGGTTTTAGGGATTTTTTTCTGGCCTTTTCTGTTGGAGCCTGGTAAAATTTTGCTATCGGTCGCAAACGCTCGCTGGAGTCCTCTCCGGACAAGCGTTTGAAAGACCAACA # Right flank : AAGCTTACTAAAATCGCTGAAACTACTGCTATACATAGATTTCAGTGGAAACATCTCAAAATTACCGTAAGCTTAGACTATTTTTTGTCTACTTTTAAATTCATTCTATCGCCGGGGATCATTGCCCCATAAGCTTTTCAGAGGATCTGGTATCGTGAACTACTGGTAAATTAAGCCCACAGTCTATGATGAGTATGCTGTAATCCAATTTTGCGCACCATGATTCGCGAGACTTTTCACTTCGCCACGGTTCAATCCCAGTTGCAGCAGCTACCCTTCGGGAAAAAATTACCTACAGCCCTCTATCTCCACATTTCTGCCCTCAAGTATTTGCCTCCTGAGTTACAAGACTATGAGGCGATCGCCCGCTCTCTGTTCCCTGATAAAACTTTCCCCATTACCCTGATCAAGTTCAATACCAGCGAACCGAAAGTTTCCTATCTGGACTACCCCGATTTTGATATAGACCCCCATCCAGCCCTCAAACAAAGTATTCAGGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTCTTTACTTGAGAAGCTAATAGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.30,-0.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 264745-261902 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016482.1 Synechococcus sp. PCC 7117 plasmid unnamed5 Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 264744 37 100.0 38 ..................................... AATCCGCTTGGCTTAATGTCTTAAAAAGCAAAAAGCCC 264669 37 100.0 37 ..................................... GAACCAGTCTGATTGCCAGAGGCCCAGGCCATCCTCT 264595 37 100.0 37 ..................................... TTAGCCAGCGCACAATGCGACGGAAACGCAGTGCTTG 264521 37 100.0 38 ..................................... CATCCTTGGCCCGGTATCGAAAAAACGTCGCCATCTTA 264446 37 100.0 37 ..................................... GCTAATGCCAGGGCTGAAAGGAAAATCAATGAGTTGG 264372 37 100.0 41 ..................................... TCGACTTCGCTCGGTGGTAGACGTAAACACCCAAGTGTTTA 264294 37 100.0 35 ..................................... GATGCCCACTCACTCGGAAGCTGGGGTAAAAACTG 264222 37 100.0 38 ..................................... AATCACCAAGGACAGCCCCCACAATAAAGCCAGGAAAA 264147 37 97.3 35 ..............G...................... AGTCCACTTCAGCCCGGAGAACGTCGATTTCCTCA 264075 37 97.3 36 ..............G...................... CGGGCATCTTTCTTAACAATGTGCATCACAACATCA 264002 37 97.3 34 ..............G...................... CATTTGCTTGTGTGATTTTGCCCTCAGCAGAAAG 263931 37 97.3 44 ..............G...................... CCATGTCTAAAATATAGACAGAAGCATAATTTTTCAGCAGAAAG 263850 37 97.3 35 ..............G...................... CAGCCAAGGCAGGATTAGTTAAAAGAGCATTTGTG 263778 37 97.3 38 ..............G...................... TTGAAATTTATTAAGGGTGGTCTTTCGACTCTAGAGGT 263703 37 97.3 35 ..............G...................... TAAGTGTCGTCAAAGCTGGGAAAACAATTAAACAG 263631 37 97.3 35 ..............G...................... AGCGCCATATCCACGCCACGACACATGATTACATT 263559 37 97.3 35 ..............G...................... ACGAATTCGTCCTGAGTCCCCCGCACATGGCGCAC 263487 37 100.0 35 ..................................... TTTACTGCCTTGTTCACCGTCTGGTTGGGCACCTC 263415 37 100.0 33 ..................................... GTTTTCTCCTTAAAAATCGTAGGTTGATTGAGC 263345 37 100.0 38 ..................................... CTTCTGACTTTGCAGTCTGGTGCGATGCCCACATTTTT 263270 37 100.0 36 ..................................... AATCGATGTAAGACTGATAGGCAGACTCAAAATAAA 263197 37 100.0 34 ..................................... CACCACAAAGAAAGCAGCAGAGGAAGCAAAATTA 263126 37 100.0 38 ..................................... CAGGGCAAGCTTCACGGACAATTGTCATTGTAGAAGGC 263051 37 100.0 38 ..................................... AATCCGCTTGGCTTAATGTCTTAAAAAGCAAAAAGCCC 262976 37 100.0 37 ..................................... GAACCAGTCTGATTGCCAGAGGCCCAGGCCATCCTCT 262902 37 100.0 37 ..................................... TTAGCCAGCGCACAATGCGACGGAAACGCAGTGCTTG 262828 37 100.0 38 ..................................... CATCCTTGGCCCGGTATCGAAAAAACGTCGCCATCTTA 262753 37 100.0 37 ..................................... GCTAATGCCAGGGCTGAAAGGAAAATCAATGAGTTGG 262679 37 100.0 41 ..................................... TCGACTTCGCTCGGTGGTAGACGTAAACACCCAAGTGTTTA 262601 37 100.0 35 ..................................... GATGCCCACTCACTCGGAAGCTGGGGTAAAAACTG 262529 37 100.0 36 ..................................... TTGGCCTGAACCTCTTTGGGAATGTTCATTTTTTTC 262456 37 100.0 37 ..................................... CTCTCGCATTGTTGAGGGCGGTTACCACGATCTCTCG 262382 37 100.0 35 ..................................... AAATATCTGGGGAGATCGCCCCTCCCCTAAAAATA 262310 37 100.0 47 ..................................... AAAGCGGATCAGCGGATCAGTTCGTCTGAAACCCAGTCAGGGCATAA 262226 37 100.0 34 ..................................... GCAGGATAGAGCGCTCTTTCAATAGTTGGTTATA 262155 37 100.0 36 ..................................... CAGGGGCATCTAACGGGGTTCCCGCTGGTTTGTTTT 262082 37 100.0 36 ..................................... TCGGGAAATAATCCCAAACCTCTGTGATTGGAGAGA 262009 37 100.0 34 ..................................... CCTCTTTTTGATGCCCGTGCAGGCTTCGGCGAGT 261938 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================== ================== 39 37 99.4 37 GTTTCAGTCCCGTGATCGGGATTTAGTGGTTGGAAAG # Left flank : CAGGGCAAGCTTCACGGACAATTGTCATTGTAGAAGG # Right flank : TCCGCGAGCCAGGACTCTTACGATACCTAGCTTTGCAAAGCTCATTTGGCAGATGTCGCTCCATGCATCCAATTTTACCCATGATCGCTCTATAAATTGTTGACCTTTAAGTATTGAAAAGTATTGAGTTTTCAAGGTTCTGGAAGTTTTGGCAAAGTCCCTAGGGTTTTTGGTCACGCTATGGGTTTGCCAACTTGATTTTAGGTCAAATCTAAAGGATGATGCTACCCGGCTTTTCTGGCGTAGATGTACCGTAGGCGATCGCCTTTTTAACAGCAGTGGCATCGAGAATGTAAATACAAACAGCATCTTCATCTGGTTTGATCAGTTTTTCTATCGAAGTTTGTAATTTTGCAAATTGCTTCGTCGTCAGAAAGCATTCAAAAACACTAAATTGCTTCCAAGTGCCATAACCCGATAATAAATCAAACAAGCGTTTGCGGCGCTTATTTCCTGCCTTTGTAGAAGGTAAGTCGTAAATAATCAGGTAAAAAAGAGTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGTGATCGGGATTTAGTGGTTGGAAAG # Alternate repeat : GTTTCAGTCCCGTGGTCGGGATTTAGTGGTTGGAAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.00,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA //