Array 1 2406650-2405629 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054501.1 Flavobacterium columnare strain F2R66 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2406649 36 100.0 30 .................................... TTTCTAGCTTTAGTCACCTCATCTTTTGAA 2406583 36 100.0 30 .................................... TCTGAGTACTGAAAATTATAGCCATTGTAA 2406517 36 100.0 30 .................................... TTTTATGTTTTTGACCGTAATCAAAAGATA 2406451 36 100.0 30 .................................... CGATTAATTTTAGATAAACCAAGAACTTTG 2406385 36 100.0 29 .................................... ATGATAAATAAGTTTTGTATGATGATGTA 2406320 36 100.0 29 .................................... ATTTCTTTTAGTCTTATTCTTTTCTTGAA 2406255 36 100.0 29 .................................... CCTGCTGTAATTGCTGTAATTGCTGAATA 2406190 36 100.0 30 .................................... AGTTAGATTTATATCAAGTATTTTAGCCTG 2406124 36 100.0 30 .................................... TCTATTACAGTGTAATATTCTTCAGGTATT 2406058 36 100.0 30 .................................... ATAAAATCCATTTTTTCAAAATAATTTAAA 2405992 36 100.0 30 .................................... GCATTTGATATTTTATAATTGTTCCGATTT 2405926 36 100.0 30 .................................... TCTACTGTTTTTATTAACTTGATAAACAGT 2405860 36 100.0 30 .................................... GTTTTTTGAATAAATAGTTCATAATCGTAA 2405794 36 97.2 29 ....A............................... ATTTGAGATTGGTGGATTAGCCTTATCAT 2405729 36 100.0 29 .................................... ACGCCTCTATTTCACGTTTATGGTAAAAA 2405664 36 69.4 0 .........................AGGGACGAGCG | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 97.9 30 GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC # Left flank : TTTACTTAAATATTATGATTATAATACTGAAGAGTTGAAGGAAAAAATAAAAAATATGGATGAGGATGAAAAAGCCAAAATAGTTAATACTAAAGAGAATTATAACAAAATAACCAATGTTTTAATTAAAAAAGCACTTGTTTTAATTATCATTCGCAACAAAATGGCGCACAATCAATATCCTCCTAAATTTATTTACGATTTAGCTACTAGTTTTCAAAATGATAAAGGGAATAAAGATTGGGAAAAATTTGTACACCAAAAAGAAAGCGAATACTTTGCGACCTATTTCAACCGAGTTTTTGAAACCATAACAAAAGAATTATGGGAAAACAAAGAGAAAAAAGATAAAACACAGGTCTAAATACAATTGCTCTTTGACATTTTAAATTAGGATTAAAAAAATGACTACATTTGCAGTGATTAAAACAAAAAAAGTTCATTTTTTAGTATAAAAAATTGTAGTAATCCCTTACTATGAGAGGCTTACCAGCGTTTAG # Right flank : TTAAAAAATAGTCCAATGGACTATTTTAGCGAAGTAGCCAGGAGGCGCGTGGGCGTTTAAAACCGAATTCAATTTTTTTGAAGGAGGGACGAGCGTTAAGGAAGCTGTCCAAAAAGTACTAATTCAACATCCAGTTTGTCACTCCTACGTAAGGAGGAGTCTCATAATCAATAGTATGTAATTTCTTCCTTTGGTCAAAATCACAAGATTGCGAACTTTTTGGACAGTCTCTAGCAAAATAGCGAGCAGGCGTTTGAAACCAAATTCAATTATTTAAAAAATAGATAAACCATAATTCTTATTCATAGAAATACCTGTTTTTTTAAAATAACAAAAACAAACCTATAACACAATCAAGTAAATATGATCTGTATACTACCTCCTAAACTTCCTTATAATTTAACCTCAACACCTAAGATATTTTTGTAAATTTGATCCATCAAACCATTTGGAAACATGAAGGCTAAATATATTAATCCGTTTACCGACTTTGGATTTAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 2 2975650-2973256 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP054501.1 Flavobacterium columnare strain F2R66 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================= ================== 2975649 36 97.2 30 ......A............................. TCATCATTTATTAATGAATCAAAATTATCA TAATA,T [2975635,2975646] 2975577 36 100.0 30 .................................... ATTTTATTTTTTTCAAAGGTCAAGGATGGA 2975511 36 100.0 30 .................................... ACAAATATAAATTATGACAACTTTATCATT 2975445 36 100.0 29 .................................... TAAATAAAAAAAGTTTAGTAAAAGTTTAG 2975380 36 100.0 73 .................................... TCTGTTAATAATAGTAATCCCGTTTATATGGTTGTGGTTTACAAACACCAAGTCAATATTTGTTATAGGTGTG 2975271 36 94.4 30 T.....A............................. AATGGTCGGACAACCTATATACACCTTCTT AATAT [2975259] 2975200 36 100.0 30 .................................... TAAATCATCAGTAGTTCGTATTGTGGATAT 2975134 36 100.0 30 .................................... TTTAGAGTGCAATACGGAAATTTCCGAGTA 2975068 36 100.0 30 .................................... AAAAATTTGTTAAAGTTTTGTTGAAAAGTA 2975002 36 100.0 30 .................................... TTATTTTGAAAAAAATTCAATTATAGGGAT 2974936 36 100.0 30 .................................... CGAGCTAATTCTTCAGCTAAACGTTGTTTG 2974870 36 100.0 30 .................................... GCTGGTTTGAGAAACGAAGGCGAGGTCTTT 2974804 36 100.0 30 .................................... TTAGTAATCAAAATTAATTTTGAATTGCAT 2974738 36 100.0 30 .................................... TCACGCTTTAAGATTGCGTTCTTACGAAGC 2974672 36 100.0 30 .................................... ATGGTGCTGAGTAATTCATTACTCATAAAC 2974606 36 100.0 29 .................................... GTAAACAAGTTTATTATACCTGGCACGAT 2974541 36 100.0 30 .................................... TAAGCCGTGGGGTTCGATCCCGACACCGAA 2974475 36 100.0 29 .................................... GATATAAAGAGGTTGTACAATAAAACCGA 2974410 36 100.0 29 .................................... ATTTTTCAATTCACCGTGGGTCGCCACCC 2974345 36 100.0 30 .................................... AGAATGTAGAGATTTATTAAATGAAATTGA 2974279 36 100.0 30 .................................... TCACGCTAAAAATAATTTTAACATTGATTT 2974213 36 100.0 30 .................................... CAAATCACAATCATTTGAGATTGAATAGTG 2974147 36 100.0 30 .................................... TTATTGCCGGAACACCAGCGAATGAAGTAA 2974081 36 100.0 30 .................................... GAAAGAAGCTAAAGCGATGTTAAGAGCATT 2974015 36 100.0 30 .................................... ATATCTTTTCTTTTACAGGAAACAATAAGA 2973949 36 100.0 30 .................................... CAATTTTAATTTATGACTGAATTTGAAATG 2973883 36 100.0 30 .................................... AAAACCATAAGAATTATTTAAAAAGTTACC 2973817 36 100.0 30 .................................... CTTTTACAATGCACGAAATTGTAGAAAATG 2973751 36 100.0 30 .................................... TGGTCAAGCAGATTCTGTAGAGAAACTTCT 2973685 36 100.0 29 .................................... TTAAAAAACAAATTAAATCTTGAAGACCA 2973620 36 100.0 30 .................................... ATATAAAACTAAAAATAAATTTATAGTAAT 2973554 36 100.0 30 .................................... ACAAATAGTTAAATCCCAGCCGTTGTATTG 2973488 36 100.0 29 .................................... CTAATGGATTATTCATTGACGTAATTGAT 2973423 36 100.0 30 .................................... ATTATTAAACTACTTAATTTCCCATCTCTA 2973357 36 100.0 30 .................................... GCAACAACCCTCCGAACCAATACCACCAAA 2973291 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================================================= ================== 36 36 99.8 31 GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Left flank : AAATGCTTGCCGAATTTAAAAAACGATTAAATGTATAATTATGATTTAAGCGAACAAGCTAAAATAGATTTGTTGCGTATTTATGAATATGGAATTGGTCAGTTTGGTCTAGACCAAGCTGATAAATATTTTGACATGATGCACGATTGTTTTAATAAAATTGCTAAAAATCCATATTTATTCCCTTTGGCATCAAATATTAAGTCAAATTATTACAAATGTGTTTGCGGAATTGACACCATCTATTATAAAGTTGTTACAAATGGAGTTATCATTACAACAATAGTTGGAAGGCAGGATTTTGAAATTCAAAATTTAGTTCATTGACATACACTATCAAATCGCAAATAACCAAACCTCATACTGATTGGTTTGATTAAAGATTAGAAACCGAGGGACGAGGTTCAACGAAGTCAAAACACGATATTATTTGGTTAAAAATTACGATTGTAATTTCAGTTGTGGTTTACAAACACCAAGTCAATATTTGTTATAGGTGT # Right flank : AGCTAACAGCTTAGTTATTAAATATCAAAGCATTAAGCCAAAATATCGTTAAAAAAAATGCTTCTTTTTTGGCACGTTATACCAAGATTGAAGCATTTTTTTATTTCTAAAACAGTTCCAGTTGGGTGGGTTGTGGTGCTTTAGGGGTTTCTACTTTACCCCAAAAGTTTTGTATGTTCCCAAATTGCTTGTCTGTAATTCGTAACATACTTACTTTTCCTGAAGGAGGCAGGAGTTTGTGTACACGTTTTTCATGTACATCGGCACTTTCGCTACTGGCACAATGCCGTATATATACCGAGTATTGCATCATACTAAAACCATCTTTCAAAAGTTGGTTCCGAAATCCAGAAGCATTTTTTCGGTCTTTCTTAGTCTCAGTAGGCAAATCAAAAAACACAAACAACCACATAATTCGATACCCGTTTAAATCCATAATTTTGGGTATTTTATCTTTTTACGATCGCCCGAAAAACACTGTTGTAAGGAACTTGCCGTTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //