Array 1 91669-92429 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFJXW010000008.1 Escherichia coli strain FC1 NODE_8_length_210123_cov_16.684470, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 91669 29 100.0 32 ............................. TAGTTTGTGATCGTCTGCGTATCGGCCTTTGT 91730 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 91791 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 91852 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 91913 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 91974 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 92035 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 92096 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 92157 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 92218 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 92279 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 92340 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 92401 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTGCTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 107931-109424 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFJXW010000008.1 Escherichia coli strain FC1 NODE_8_length_210123_cov_16.684470, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 107931 29 100.0 32 ............................. CGGAGCCAGTGAGTTACAGGAAGGAGAACGCC 107992 29 100.0 32 ............................. TTTTGTCACGGAAAAATCAGTTTTTTAGCAAA 108053 29 100.0 32 ............................. CGCGCGATGCGCCGGTTATATCGCTGGTAGTG 108114 29 100.0 32 ............................. TTTCGGTAACGGCCATCGCTTAAAACTTCAAC 108175 29 100.0 33 ............................. CGTGGATCATCTGCTGCGGCAACCTGCCCCGCC 108237 29 100.0 32 ............................. CTTTCGACGTGGCGCTGAAACGGTGTCAACAT 108298 29 100.0 32 ............................. GAATCGCAACTGATGACGCTCATGCTCGCCAT 108359 29 100.0 32 ............................. TGACTGCGGTTCAAAATCTCCGGCACACGTCC 108420 29 100.0 32 ............................. GCCGCGCCGCACTGGCGCTGGCACGGTATGCA 108481 29 96.6 32 .........T................... CCCTCACGGGCTATTTGGTTAATCGAAAATTA 108542 29 100.0 32 ............................. CCAGCCCTTGTTAACGTCTTCGCCGTTCGGGT 108603 29 100.0 32 ............................. ATCACTATCGTGATGCTGACGGCGCACAGCTC 108664 29 100.0 32 ............................. CCACCACCGCCCCGACACCACATATAGTAGCG 108725 29 100.0 32 ............................. GAAGTCATGAAGACTTCGACTATTTCTTGATA 108786 29 100.0 32 ............................. ATACCCCAGCGTTTCGTTATATGACGGAAGAT 108847 29 100.0 32 ............................. GGATTTGCATTAACGCGGCGTGAACATTATTT 108908 29 100.0 32 ............................. GGGATGAAATTGAACTTCCAGGCGACCGACAA 108969 29 100.0 32 ............................. ATTGATAACTCGCGCTCATCCATTTTGAATTA 109030 29 100.0 32 ............................. GTCTGTGATGGTCTGCTCGTGAGTCCGCGGCG 109091 29 100.0 32 ............................. TAAACACAAGAAAAGGGCGGCACGGAGCCGCC 109152 29 100.0 32 ............................. GATTTTTCGCGAACTATCCCGGCGTAATGCGG 109213 29 100.0 32 ............................. AAAATTCCATTTTATTACTGTCGGCAATTTCG 109274 29 100.0 32 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAG 109335 29 100.0 32 ............................. GCGTGGCGCGGGGCGTATTCCCCGGCGAGTAA 109396 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTACTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //