Array 1 441-52 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJR01000014.1 Gallibacterium genomosp. 3 strain 59/S3/89 contig000011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 440 28 100.0 32 ............................ GCTATCCAAACCCACGGCTATGCGATTACCAA 380 28 100.0 32 ............................ TATGGATAAACCATTACCAAGACCACGTATAA 320 28 100.0 32 ............................ TGCAGTTGCCCCCGCTATTGCCCCAATAGATT 260 28 100.0 32 ............................ ATGACAACATAGGTTTTAATTCTGTGGTCATT 200 28 100.0 33 ............................ CCACTGTAAAATCATCCCATTTGGCAATTTGCA 139 28 100.0 32 ............................ AAGTGTTTATTACAAGAATGCTGACCCAACGC 79 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 32 CTTTACTGCCGCATAGGCAGCTTAGAAA # Left flank : TTGTCACTTCAAAAAGTGGTGAATTAGAAGATAAAGATGCCATTATTGAACGTATTAAAGAAGCAACTCAATATGTTGATATCAACCAACTTTGCTTAAGCCCGCAGTGTGGTTTCGCTTCTACTGAAGAAGGAAATGTATTAACTGAAGAACAGCAATGGAAAAAACTCGAATTCATTCGTGAAATTAGCGAAGAAGTTTGGGGCAAATAATTAATTTTGAACGATTTATCCATAATAGCCACATCTAAAAAATGTGGCTATTTTTATTTAGTAGCCAATCAAAACCTTTACAACTCATTTTGATTACCTTAACCTCAGTAAATAGCCTAATTTCTAAATTGTTCCCCGAATTCTATCAGCTCTAAAAACCCTTATTTTTTCGGACAAATTAACTATTTGATTTATAAGTAATTATATTTACCTTATAAAAAAGGGTTTATCTTTAGATTTGTAGTATAATCCCTTGTGGTTCTTGAAGTTATCTTAACTTCTGTTCTA # Right flank : AATATAGGTGGCTTTTTTATTGGGAATGAATAACTTTGGTATAGTAGACAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTTACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 106661-107049 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJR01000009.1 Gallibacterium genomosp. 3 strain 59/S3/89 contig000007b, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 106661 28 100.0 32 ............................ ATATCCGCAATTTTATTTGCGATTGGTTCAAT 106721 28 100.0 32 ............................ TACACTCCACGCCATCATCTGCAACCAAGCAC 106781 28 100.0 32 ............................ ATTGTATTTAAACTTTGTATTAAAGCAACTAC 106841 28 100.0 32 ............................ TGCTACTGCTTGTGCATTACTAAAAAAAGCGT 106901 28 100.0 32 ............................ GAAGCCGTCGATAAAAAGGGCGAACAAGTGAA 106961 28 100.0 33 ............................ GGTGTCAAATAACACAACACATAATAACTACTA 107022 28 82.1 0 ....................GAA.A.T. | ========== ====== ====== ====== ============================ ================================= ================== 7 28 97.4 32 GTTTACTGCCGCATAGGCAGCTTAGAAA # Left flank : TTGGCGGTATCGTTGGTGCAGTATTAACAGGTGTATTTGTATCAACTGATATTACCGGTGGTGACGCGAGTGTACTCGCTCAAATCGAAAGTGTTGTGATCACCTTAATTTACAGCAGTGTTGTTTCTTGCTTGATTCTTTGGGTAATGAGTTTATTCATGGATATCCGAGTATCTGCTGATGAAGAACGCCAAGGTTTAGACTTAATCTCTCATGGCGAACGTTTAGAATAGTTTTTAATAAGCATAGTAGTTGTTATATTGACAATGTTTCTGCACCGTAAAGGTTGAATTTCAACTGATGAAGGTGCAGTTTTTTATTTTTTCAGTTTACTCGCCTCCAACACACTGCCCTTTTCCTTATATTCATACCCTTATTTTTTAGTATCAAATAACTAATTGATTTATAAGTAATTATATTTACCTTATAAAAAAGGGTTTATCTTTAGATTTGTAGTATAATCCCTTGTGGTTCTTGAAGTTATCTTAACTTCTGTTCTA # Right flank : AAGCAAAAAATTACCCTATAACGTAAAACATTATAGAGTAATCATAACTAGATAAATCAACTCAACTAAAATTAGTTCCAAACTGATTTCATTACTGTTTTATAAGATTCGTTAAGGTGATTAATTAACACTTCAAACATAGCGTAAACTAAATCACCATTAATTTTATCCCCTTCTGTTAATAAGCAAGTATCTAAAACAATTGCATTATCATTATCTAGATAATATTTGAATGATTTATACTGTTTATTCAAATCATTTAATAATGCTTGCACTTTTTGTACTGCTTCTTCTGATTCTACTTTTGGTGCAACTAATACACGAATCATTGCATAAATAGAATCATCTAAAATAACGATGGTAGGTAATTGATTGCCGCCAATATCAAGATGAGAACGAAATACTACTGTATTTAACGCATCATCAGCAATTTCTTCAACAACAAAAGCATCTACTTTCGCATTATCTAAATAGCTTTTAAAACTTTCAGCTTTCTTATT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTTACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 19936-19547 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJR01000045.1 Gallibacterium genomosp. 3 strain 59/S3/89 contig000038, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 19935 28 100.0 33 ............................ CTGATGTCGTATGTATGGCGATTATTGAGTTTT 19874 28 100.0 32 ............................ TCCTGTTTTTAAAAAATGTTCTGTGACTTCTA 19814 28 100.0 32 ............................ TTGATTGGTTTGCAGAGGCTAAACCAAATCCT 19754 28 100.0 32 ............................ AAACGGAGTTTATATGCAAGTGCCTTTCTTTA 19694 28 100.0 33 ............................ TTTTTCTGTGTGTGATGGCAGGTATTTCACGAT 19633 28 96.4 32 ............G............... AAAGGGTGATGCTGATATGCTAAAACGCATGT 19573 27 85.7 0 .................T...C..-..G | ========== ====== ====== ====== ============================ ================================= ================== 7 28 97.4 32 GTTTTCTGCCGCATAGGCAGCTTAGAAA # Left flank : ATTACGCGCTGCATAAATTTCAGCTAATTTTTCAGGAAAAACGAGCTTAATTCCTTGTGTTGCTTGTTGTAACTTTTCTAAATTGGCTTGTTGATCAACTTGTAATTGAGAAGTTTGGGTCGTAGGCTCTGTTGTTGGTGTAGTTACCACCTCTTCTGCAAAGCTTACTTCCATCATCGCAGATAATAAAATTGTGGTGATAATATGTTTTTTTTGCAACATATTAACCTCCTCTATTAGTTCTTTAAGTTATTAAAATAGTTAAAATTATGTAACATTATAAAATAAGATTATTTTTATTTCATCTTTTCTAATAAAAAGTTATATCGACCTCTTACCAGATTATTTTCAAGTTAATTATTTTATTTACCCCTTTATTTTTTATTAAAAATAACCGATTGATTTTAAATAATTTTTACCACCTTGACAAAAAAGGGGTAAATCACTAGATTTGTATATTATCCCTTGGTATTTCTGGGGTAATGCGTTTTTGTGTTGTA # Right flank : TTAAGGGGCTTTTGTCCCTTGATAATCCCAAGTTTTAAGTAATCAAACAATCAAATAGCTAATTTATTACTAACTTTTCTATTTTACTTAATCTATTACTTTAACCTTAAGATACAAAATCACTTTTACCACGAGAAGCAATTCAGTTTACTGATAAAGTCTATTGAATATTTTTTAGATATTTTTGCTCTAATTATCATTTAGGCTTCGCCCTAAAGGGCGACCTCCTTTTCTTTACTCGTATAAAGAAAAGGAGGCAAAAGAAAATACGCCCTCGCACACTTGCTATTCCTCATTTCAATAAGATTTTTCGGGCGGCAAAAAACAGAGATTTTTCTCACTACGTTCGAAAAATGATCACTTTTTTTGCCTAAAAATCTTATTTGCATTCGGGCAAGTGTGAGAGGGAACCCATTAAACACTTATTAATATTTGTGACTAAATTTAGATTTATCATCAAACAAAATCGCCTCTACAACGAGAGGCGATTTTTTCTTTTC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTTTCTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 58244-57627 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJR01000045.1 Gallibacterium genomosp. 3 strain 59/S3/89 contig000038, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 58243 28 100.0 32 ............................ TTTTTCCGCCAGTTTTTGAAATTTGTTTTGAA 58183 28 100.0 21 ............................ TGATACTGGATTTAAATAACA Deletion [58135] 58134 28 100.0 32 ............................ ACGAATCGTTTTTTATAATGGCCGCATAGCAA 58074 28 100.0 32 ............................ GATTTATGCTGCGATTAGACCAGGTGCGATTA 58014 28 100.0 32 ............................ TACCGGCAACGCTTTTTTTCCTGCTTCAATGG 57954 28 100.0 32 ............................ GTCATCCGCTAATTTATAGCGTGGGTATTTGC 57894 28 100.0 32 ............................ ATTAGGAAATCTATGTTTATGCTTTTTAATTT 57834 28 100.0 32 ............................ GACAACCCATTATGGTTCACTGAGGGCGGAAA 57774 28 100.0 32 ............................ ATCATTCGTGATTAATCGAGAGTTAAAAAAAC 57714 28 100.0 32 ............................ AACGTAAGCCTATTGATTTAATTACGTTGGAA 57654 28 92.9 0 .........................CG. | ========== ====== ====== ====== ============================ ================================ ================== 11 28 99.4 31 CTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TATTGCATTACAGTTAGATCCATTACAAGATTATTTTATAATCAATGCAATTACTCCTGTTCCTGAAAAAACAACTGCTGTTCGTTACCAAAGAATTCAACATAAGGGTAATAGTGCATTAAAACGAGCTGAAAAGCGGATGAAAGAAAAAGGTAATTTTTCTGATGCAGTTTTAGAAAATATGCGTCTAAAACAACAGCAGGTAAAAAGATACCCTCATGTATTTTTGAAAAGCGCGAGTACTAAGCAAACTAAGATGTTACTAGAAATAAAACGTGTAGTTTGTAGTGAACATCGAGATGGGTTATTTACCGGTTATGGGTTAAGTAAAGAAGCAATTGCAACTACACCACATTTTTAATATAGAAAACCCTTTTTTTTGAGCAAAAATATATATTTTAAAAATCAAACACTTATATAAGACCTCAAAAAAAGGGTATTTTTGATTAAAATGCTCTTTAACAGTTTATTTATCTTATTTGTAAGGGGTTTGATCTCTA # Right flank : TTAAAGGCGAAAGAAAATGGGCTTTGCTACCGTAAGGCAGCTTAAACCTAAAATTATTTGTATCTATCTATTCTTATTTAAAAAAGCTTTAAATCTGTTTTAAACCCTATTTAAAATTGTCAACTATGATTTTTCTATATCTAACCGATATAAAAAATCTATTGCTCATTTTCTTTCTGCCAAAATCCTAAAAATTCATTAAATTGCCAAATTGCTTCTGTTTGTGAATCTTTAGTTAAAGAAACCGTTGCATATGAAACTGCAACTTGTTCAAGTTCTTTATTTTTTAACTCTTCCGCTAATTCATCCAATACTATTGCTAGTGAAAAATTAAGCCATGGCTTAATTTGTGAATTTGTCAATTCAAGTGGGCGATAATCAAAACGATGATATTCTTTCGCACAAGAATAAGGATCTTGAGATGCTTTCTCATAATAGGCAAAAGCATAATGCCACTCACTTAACTCATCAGGTAAACAGACAAACTCCTCCATCGGTTG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //