Array 1 8882-7471 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCDP010000030.1 Flavobacterium psychrophilum strain 97577 contig00030, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== ============================== ================== 8881 46 71.7 29 A.AA.T....A.ACC...CGGGT....................... TTTTGTTTTCGTCAAATTCCCCATTTGTG T [8877] 8805 46 100.0 30 .............................................. ATTAATGCGCTAATTATCGAAGGTAGCACT 8729 46 100.0 30 .............................................. AGGACGATTATAAATTTATGCTAAATATTA 8653 46 100.0 30 .............................................. AGATATATCTAATACTAGAGCGTACGACAG 8577 46 100.0 30 .............................................. AAAAACAATATCGAAAAACTGAAAGAGAAT 8501 46 100.0 30 .............................................. ATTTAATGTAATTGTACCCGAACCAGCTCC 8425 46 100.0 30 .............................................. TATATCCGTGTTTGAATACACATTGCCACC 8349 46 100.0 29 .............................................. CGTTTTCGCACGTGAAATCAAAGTACTAT 8274 46 100.0 30 .............................................. TTTTAAAAAATGGTTAAGTAGGAAAACTTA 8198 46 100.0 30 .............................................. TCCAGTAAGCGAGATGTCGTATATCAAAGT 8122 46 100.0 30 .............................................. AGCCAATGCCTTGTGTCCTGTTATGTGTTC 8046 46 100.0 30 .............................................. TAATAAGTTGCTCGTTTCCGTTTATTCCGT 7970 46 100.0 30 .............................................. AGTAGGTAATGTATTCACAATAGACACATT 7894 46 100.0 29 .............................................. AAAACGAAATACATACAGCGCACGCATTC 7819 46 97.8 30 ............................C................. AGGCACTTCTTTAGACTTAAATAAGTCTTT 7743 46 100.0 29 .............................................. AGTAATAGATGGGGGGTTTGAATGCCGTA 7668 46 100.0 30 .............................................. TCATCATCTGATGAAAATTGCTGTTCAATA 7592 46 100.0 30 .............................................. AAGCAAAATAAAATAAAAGAAATATTTAGC 7516 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== ============================== ================== 19 46 98.4 30 GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Left flank : CAAAATTGGGGTATTGTTTTAAATCAATTTAATCTTATATTTGACAAAAGGCTCAGATTATAAAATCCAAGCCTAACTTTTTAACTTACACACTTTGCGGGATAGTGTCATCA # Right flank : ATACCGCGAGTTAATCGTTTGATATGTTGGTGGTTATATGCTTATTTTGAAATTAAAAAACAGTTCTGTTTGTGTGTTGATATTCTGGTAGGTCTAATATTTCTAAATCCTATTTTTCAAAAAAGTTCTAATTGTTGCGAAGGTTTGTCTGTTTCTACAGGTTTTTTTCCATAAAAAAGCTCCATCATACCAAATTGTTTATCGGTTATTTGCATTACTCCAATTTTGCCGTGTTCGGGCAAACTATTTCTTATTCTTTTGGTATGTACTTCGGCATTTTCTCTGCTGGCACAAAATCGTATATAGATCGAAAACTGAAACATAGAAAAACCATCGTCCAATAATTTCTTGCGAAATTCACTGGCAATTTTACGCTCTTTCCGCGTTTCGGTAGGTAAGTCAAAAAAAACTAATATCCACAAACTTCTATACTGGTTTAAACGGGTGTAATGTTCGTCATACATAAATAGGGTATAAAATTTTTCTTGCGGCTCCCGCAA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.91%AT] # Reference repeat match prediction: R [matched GTTGTGAATTGCTTTCAAAATTGTATTTTAGCTTATAATTACCAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.90,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 375-891 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCDP010000050.1 Flavobacterium psychrophilum strain 97577 contig00050, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== =================================== ================== 375 34 100.0 35 .................................. ACTGAAAAAAGCACCATTTTCAATATCAGTCACAG 444 34 97.1 35 ....................A............. GCCTGCAAAAATACCCCTTCTAATAACAGTCACAG 513 34 94.1 35 ...............T....A............. CTCTGCAAAAGACCCTTTTCCGATAGTAGTCACAG 582 34 100.0 35 .................................. CTCTGCAAAAGCCTGATCTCCAATAGTAGTCACAG 651 34 100.0 35 .................................. ACTGAAAAAAGCACCATTTTCAATATCAGTCACAG 720 34 97.1 35 ....................A............. ATCTGCAAAAGCCTCTTCTCCAATAGTAGTCACAG 789 34 97.1 35 ....................A............. GCCTACAAAAGCATACCTTCCAATAGAAGTTGCAG 858 34 79.4 0 ..........A.....C.........TT.TTG.. | ========== ====== ====== ====== ================================== =================================== ================== 8 34 95.6 35 AATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : GTTTGTTTCTAAATGATTAGTTGTTTTGATTAACTGCCCTAATGTGTTGTAAAAATTCACTTTTTGTAATTGTAAGCCCTCTTGCAAGGCTATGTTTAAAATTTCTGAAACTGGGTTTGGGTATATTTTTAAAGCACTTTCTATTGCAAATGAATGATTAGAAAGTAAACCACCAGAAATAGGGCTGAAATTTCTCCAAACCGCGGCTGCCTGATAAGCGACTTGCGTACCAGTAGGAACATTTAAAGCACAGTTTGATTGAGTAATATTGCCGAAGACATTTGCATTAATAACTAAAGGGCTTGTAATATGGCAATTTACTGTCTTTAAACTTCTACAGCCTGCAAAAGCATCCTCTCCAATAGCAGTCACAGA # Right flank : ATGTTCAAAAGCAGATTCTCCAATAGCAGTCACGGCGTAGTTTTCCG # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : AATTAGGAATTGTAACTGATATTAAACCAGAACA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.59%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 2-318 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCDP010000067.1 Flavobacterium psychrophilum strain 97577 contig00067, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================= ============================ ================== 2 41 100.0 28 ......................................... CCGGCAAAAGCACCTCGATTAATAGTAA 71 41 100.0 28 ......................................... TTGAAAAAAGCCTCATCTCCAATAGAGG 140 41 95.1 28 ......................A.................G CCTCCAAAAACATAATTTCCAATAGAGG 209 41 87.8 28 .............G..G.....G.........T...G.... TCGGAAAAAGTATAATTTCCAATAGTAG 278 41 78.0 0 .......G.....G..G.....C.........TT.TTG... | ========== ====== ====== ====== ========================================= ============================ ================== 5 41 92.2 28 TCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACAA # Left flank : GT # Right flank : TGTTCAAAAGCAGATTCTCCAATAGCAGTCACGGCGTAGTTTTCCGAATTATAAGCTACTGTTTCTGGTATTTCTGCTGCTCCAGTA # Questionable array : NO Score: 2.59 # Score Detail : 1:0, 2:0, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 317-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCDP010000073.1 Flavobacterium psychrophilum strain 97577 contig00073, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================== =========================== ================== 316 41 97.6 27 -......................................... ATCTGCAAAAGCCTCATCTCCAATAGT 248 42 100.0 27 .......................................... CTCTGCAAAAGCCTCATCTCCAATAGC 179 42 97.6 27 ............................A............. GCCTGCAAAAATACCCCTTCTAATAAC 110 42 100.0 27 .......................................... ACTGAAAAAAGCACCATTTTCAATATC 41 41 95.2 0 ............................A............- | ========== ====== ====== ====== ========================================== =========================== ================== 5 42 98.1 27 AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : | # Right flank : C # Questionable array : NO Score: 2.54 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.13, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 323-75 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCDP010000072.1 Flavobacterium psychrophilum strain 97577 contig00072, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================= ============================ ================== 322 41 100.0 28 ......................................... ATCTGCAAAAGCCTCATCTCCAATAGTA 253 41 100.0 28 ......................................... CCTGAGAAAAGCACCATGTTCAATATCA 184 41 97.6 28 ...........................A............. GCCAAAAAAAGCAAAATTTTCAATAGCA 115 41 82.9 0 .................A.....C.........TT.TTG.. | ========== ====== ====== ====== ========================================= ============================ ================== 4 41 95.1 28 GTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : | # Right flank : AATGTTCAAAAGCAGATTCTCCAATAGCAGTCACGGCGTAGTTTTCCGAATTATAAGCTACTGTTTCTGGTATTT # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.85%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 2-306 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCDP010000076.1 Flavobacterium psychrophilum strain 97577 contig00076, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================================== =========================== ================== 2 42 100.0 27 .......................................... ATTGAAAAAAGTACCTTCCTTAATAGT 71 42 95.2 27 ...A....................A................. GCCTCCAAAAACATAATCTCCAATAGA 140 42 100.0 27 .......................................... ATTTGCAAAAGCATTCTCTCGAATAGT 209 42 100.0 27 .......................................... ACCGGCAAAAGCACCTCGATTAATAGT 278 29 66.7 0 .A...........................------------- | Deletion [307] ========== ====== ====== ====== ========================================== =========================== ================== 5 42 92.4 27 AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Left flank : CA # Right flank : T # Questionable array : NO Score: 2.54 # Score Detail : 1:0, 2:0, 3:0, 4:0.62, 5:0, 6:0.25, 7:-0.13, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCACAGAATTAGGAATTGTAACTGATGTTAAACCAGAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 1-234 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCDP010000093.1 Flavobacterium psychrophilum strain 97577 contig00093, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ========================================== ================== 1 27 100.0 42 ........................... GATATTGAAAATGGTGCTTTTTTCAGTTGTTCTGGTTTAACA 70 27 100.0 42 ........................... ACTATTGGAGATGAGTCTTTTGCACGCTGTTCTGGTTTAACA 139 27 100.0 42 ........................... ACTATTGGAGATGAGGCTTTTGCAGATTGTTCTGGTTTAACA 208 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ========================================== ================== 4 27 100.0 42 TCAGTTACAATTCCTAATTCTGTGACT # Left flank : | # Right flank : | # Questionable array : NO Score: 2.66 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGTTACAATTCCTAATTCTGTGACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //