Array 1 1166674-1158601 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP017305.1 Fischerella sp. NIES-3754 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 1166673 37 97.3 36 ....................................A TAAAATGCTTATCCCAAAAGGAATACAGCCTATTGA 1166600 37 97.3 38 ....................................A CGTCACATAACCAAATTCCCAACTTAAAGGCATTTTTG 1166525 37 97.3 42 ....................................A TGGGATGAAGTAGACGAACTTTACCCACAATCCATGATTCCG 1166446 37 97.3 39 ....................................A TGTCAACGAGGACGACCAGCAACATGGTGTCAAACAGTT 1166370 37 97.3 36 ....................................A TCATAGAAATTTTCCCTTCTATTTTCTATTATCCTC 1166297 37 97.3 36 ....................................A TATTGACGCTTTAGGCAATCTCACAGGTGATATTAA 1166224 37 97.3 35 ....................................A CAAATTTAATTGTAGATAATTATATAAATCTTTTC 1166152 37 97.3 32 ....................................A CTATTAACAAAATTTAAAATTAGTCAAAAAAA 1166083 37 97.3 35 ....................................A ATGTATTGCTTGTATGGCAAAATTTTACCAGAATT 1166011 37 97.3 36 ....................................A TTCTCAATAAGCCCAAAATAATCGTATTTTGGCACA 1165938 37 97.3 37 ....................................A ATTGTAGACATATTATTATCTTATTAATAATCCTCGC 1165864 37 97.3 34 ....................................A CAATATATTCGTGAAAAAACTGGCATTAATCTTG 1165793 37 97.3 36 ....................................A GCTTCCATAAGGGGCCTGATCCCATTTGTGGTCAGC 1165720 37 97.3 35 ....................................A ATTATATTTATATCCATCTATATCGACCTCTACGT 1165648 37 97.3 37 ....................................A CTATAAAAGCCGGAGGAGTGGGTATTACTCTTACTGC 1165574 37 97.3 35 ....................................A ATAATAAAAAATCCTTTAATTGCAATACTTTCAGC 1165502 37 100.0 35 ..................................... TATTAGAGTAGATAAACATGAATTACCATCCACAT 1165430 37 100.0 35 ..................................... TTTTGGCCAAATAATCTCCATCCTATAGAAGCCCC 1165358 37 100.0 37 ..................................... GATGATTTTCAATCTGGGAAAACACGTATTTTTGTAG 1165284 37 100.0 36 ..................................... CACAACATATTCTGATGTAGCTGGTAAGAAAAAAAA 1165211 37 100.0 33 ..................................... CATCAATCTTCAAATGGAATTCCACCCAGTGGG 1165141 37 100.0 35 ..................................... GCAATTTATATTCACCAAAAATACTCAACACTTAA 1165069 37 100.0 40 ..................................... GCGAAAATCCAAAGAGGATAGGGATAAAACCCTATCCCAA 1164992 37 100.0 37 ..................................... TTTCTGCTGCATTTAAAACAGGCCGGGCAGTTGATAG 1164918 37 100.0 33 ..................................... TTGCAAGACATTCTGTAAAGAATGTCTTACCAG 1164848 37 100.0 35 ..................................... CCTAATTGGCTTCTCACAAAGTGATATCTAGCCTC 1164776 37 100.0 35 ..................................... AAGAGTGCCTCCTCTTTCCGAAGATAATATTCTTT 1164704 37 100.0 34 ..................................... TTATCCAACTATTAATTTGGATGGCAAAACAGAA 1164633 37 100.0 35 ..................................... GGTATATTCTGAGACTGCGACCGATATTGGCGGCC 1164561 37 100.0 36 ..................................... ATTATGACATTGAGGATACCAAAACCCACTGGTTGG 1164488 37 100.0 34 ..................................... TTCCAATTATTTGGCCATAACTTACACGTTGATC 1164417 37 100.0 33 ..................................... GCTTAGCCTCCATACGGTTAAGAGTAGTATAGA 1164347 37 100.0 38 ..................................... TATCTTCTAGATTTAATAGATCTAGAACATATTTTTTG 1164272 37 100.0 37 ..................................... TCAGCCAAAACAGGGTAGATTGAGAACTCAAATACAA 1164198 37 100.0 37 ..................................... ATAATTTCGGCCCCAGGGATCCCAAGGATCCCCGCGA 1164124 37 100.0 37 ..................................... ATCTCCTGATAGCTTCCGAAGATATATACAAGATTTA 1164050 37 100.0 36 ..................................... GCATCTATATATATCCACTTTCACACCCGATTCAAA 1163977 37 100.0 38 ..................................... TTTTAGAAATGGAATTTCACCCAGTGGGGGGGCATCAA 1163902 37 100.0 35 ..................................... TTTTAGATTTTTTCCCCGATTCAATTTTTGACAAT 1163830 37 100.0 37 ..................................... GATTCAATAGAATCGGCATACAAAGGAATACCATATC 1163756 37 100.0 35 ..................................... TAATTTCAGAAACATATGGATTGCTGCAAGAAAGC 1163684 37 100.0 38 ..................................... ATGCCTAAAAAAACTATCTCTGCATTACAGATTTGAGG 1163609 37 100.0 43 ..................................... GATAAAAAACAACTAATTTAATCATTCAGGGGGCACCACACAT 1163529 37 100.0 39 ..................................... TATTTTGAGAGAGTTGTTGAGTATCGCTGTAATGATTAC 1163453 37 100.0 38 ..................................... CAATTTTTATTGATTGAAGGAGTATTATCTATTATCGA 1163378 37 100.0 37 ..................................... TTTGGGGGCATACTCCCCCAAAGAATTTTCTACTTGC 1163304 37 100.0 37 ..................................... GCAATTTATATTCACCAAAAATATTCAACACTTAATT 1163230 37 100.0 38 ..................................... TTAAATTTTTACGGAAATAGATTAGATACCATTGAGGA 1163155 37 100.0 36 ..................................... ACTTTGAATCTAACTGGTTCGATGTGTCGTAGTCGG 1163082 37 100.0 35 ..................................... CCAACCTCACGGAGTACTCACCTTCATCGATTGGA 1163010 37 100.0 35 ..................................... TTCTTCTTCTTCTCATTTTCTCCCCTCCTTTTTAA 1162938 37 100.0 45 ..................................... GACGTAGCAATCGATGTCGAAGTGGATATTTTCCTCTTTTGTAGA 1162856 37 100.0 36 ..................................... TTATTTTTTCTCTGAGACTACACCACCATCAAATTT 1162783 37 100.0 37 ..................................... GCAATCCATATGGGGTGAGCGTTTCAAATACTCAACA 1162709 37 100.0 36 ..................................... AAAAGGCGATCGCATTTTATCCGTACTTCAAGGAAA 1162636 37 100.0 34 ..................................... TGGTGCACCCCCACTGGATGAATTTTCTCTTTGA 1162565 37 100.0 37 ..................................... CAAAATCGGCCATTAATGCATCCAGATCTTCTGGATC 1162491 37 100.0 34 ..................................... CCAGGTTGATAAGAATCTTAGGGAATGCTGTCAG 1162420 37 100.0 37 ..................................... AATGGTACGGTTTTTAGCGTTAACGAGGAACAATTTG 1162346 37 100.0 38 ..................................... TTATGGAGTTACAAAAATGGTGATATAACTTACTTTGG 1162271 37 100.0 35 ..................................... ATCACACTTTTGAATGAGCAAAAAGAAAAATTGAT 1162199 37 100.0 38 ..................................... ACTGTATAAGGATTTCAGCCTATTTTGATGGATTTAGT 1162124 37 100.0 34 ..................................... GCCTGCTGATGAAATATTTCTTGAATATATTAAA 1162053 37 100.0 33 ..................................... AATGGCGCTAAGAAAACTAATTCAGGAATTAGA 1161983 37 100.0 38 ..................................... GATATACTTCGATAAGAAGCTGAATCGTTTCCTACACC 1161908 37 100.0 36 ..................................... CAGGAATATCGCGCCGCCTTGGAAAAAGGTATCCAA 1161835 37 100.0 37 ..................................... GTTCCCGTGGGGAGGGGAGCGGAGATCCCCAGGATGA 1161761 37 100.0 38 ..................................... CTCGAACATCTGACCCAAGGGGGGGATTACACCTAGAA 1161686 37 100.0 36 ..................................... CACCACACATTGGACCTCCAAAGAAAGATTCCACCC 1161613 37 100.0 36 ..................................... TCTAAATTTCCTCAACTCATCCCAGCGCCGCGTATG 1161540 37 100.0 32 ..................................... GCTTGCAGATTTAAGCAATAATGCAACAAATA 1161471 37 100.0 35 ..................................... GAATTGGCGATCGCAGAAGGTGAATCACCTATTGA 1161399 37 100.0 36 ..................................... GATCTGTCTTTGGAAGACGTGCAATACCTATCAGTA 1161326 37 100.0 37 ..................................... TTCCGACTGACTTTAAGTACTTTGTTGCTGTTTCTAA 1161252 37 100.0 33 ..................................... ATGACGGCGATTCTTTTCAAGAGTTTGGCAAGG 1161182 37 100.0 34 ..................................... TTAGCAATCGCAGCACAGCAATCGACACAACGAC 1161111 37 100.0 37 ..................................... CTAGTAGATATTCTGAACTTAAGATTTAATGCCTCAG 1161037 37 100.0 36 ..................................... GCGAATCTTTTCGCGTTTATACCCTAACTGCCATTC 1160964 37 100.0 34 ..................................... TGAATCGTTGGGCAACCATCGCATCATTGAGGAA 1160893 37 100.0 36 ..................................... TCGGCTCACCTAAACCTGAAGAAAATCTTAAATTAA 1160820 37 100.0 37 ..................................... TGAAGTCGCTGTGTATCAATTCTCCAGTTGTATTTGT 1160746 37 100.0 39 ..................................... GTTTGAAGTCACAGCCGGAAGATTACAAAGTGTACAGCG 1160670 37 100.0 33 ..................................... GGCATTTCCGCAGTAAGGTAGCTATGGCAGTAG 1160600 37 100.0 33 ..................................... ACTCCACCCCACTCAATTCATCCCCATCGCAGA 1160530 37 100.0 35 ..................................... AAACAGCCTACTATGAGGGGAAAGCAATTGTAACC 1160458 37 100.0 37 ..................................... GCCCGGTTTCTTCATACACTAAAGGCTTACCATTAAC 1160384 37 100.0 34 ..................................... GAGCAGATCAAGCTTCAGCTTTGGCGAGTGCTGC 1160313 37 100.0 37 ..................................... GACGACCACAGAGGAATTAATTTAATTGATAGAGTGC 1160239 37 100.0 34 ..................................... AACAATGTCTTTGCTGATTTTATGTTGAGCTCGA 1160168 37 100.0 34 ..................................... ATCCAAACTTTCCCCAATGGTTATAAATGGGGAG 1160097 37 100.0 35 ..................................... AGAACGTGATTGCACACCTTTCGCGACATTATCTA 1160025 37 100.0 34 ..................................... TATTTGTACCATCCTTTCTCCCAAACAAAAATAG 1159954 37 100.0 36 ..................................... AACAATTTTATTTTTAAAAGAATTAAAAAGTTCTGA 1159881 37 100.0 37 ..................................... GGAAACATGGGAGGAGGCGGGGCTTTTACTTTGCTTC 1159807 37 100.0 37 ..................................... AATCCAAGTAAGCCCTATTCTTCGGCTCTTGACTCCG 1159733 37 100.0 35 ..................................... CTTTTAACCCTTTCGGGACGGTAACTGGAAGGTAC 1159661 37 100.0 38 ..................................... TCGTGGTTCTTGTAAATTGGGGCGAGTAATTCGCGTAG 1159586 37 100.0 35 ..................................... AAAAGCCAGAGCTATTTTTTGCTAGACGTATTCAG 1159514 37 100.0 36 ..................................... AATAAATTTAGCCCAGGCTCAAGCAGGGCGAATTGC 1159441 37 100.0 37 ..................................... ACCTTTATAAAAAACATCATAGTTTAGGTATTCAATA 1159367 37 100.0 36 ..................................... TTAATAGTGACAGCTACAATCAGCAATAAAAAATTA 1159294 37 100.0 36 ..................................... CGCTGTACCATAGAGACGATTAATTAGTTCGGCGTT 1159221 37 100.0 37 ..................................... ACAAAAATGGAGGCTAGTAATAAAACAATCTGTCCAA 1159147 37 100.0 34 ..................................... ATCAATCGCTAGCTCAGGTTCGCCAACGATTTTT 1159076 37 100.0 37 ..................................... ACCTACAAGATAGGTGTTAACGTCTTCATCTACTAGA 1159002 37 100.0 37 ..................................... TTAATCCAATTGCATAGTAGTCTAATATATTCCGTGC 1158928 37 100.0 37 ..................................... CAGACAAGACTTTTTCAACAGATTCAAATATCAAATC 1158854 37 100.0 33 ..................................... TGGCTTTTTCGATTGCCGGATTGGGAGGCAAAG 1158784 37 100.0 38 ..................................... TGACAGCACTGTGCCTACCAACTTTGGCGACACAGGTT 1158709 37 100.0 35 ..................................... TTCTTGGGAGGAATTATTTCCCCCGTGCGAGGAAT 1158637 37 97.3 0 ....................................C | ========== ====== ====== ====== ===================================== ============================================= ================== 111 37 99.6 36 GTTGCAACTTAAACTAATCCCTATTAGGGATTGAAAT # Left flank : TCCTGAAGATAAGCGTCGTACCAAAATCCACAATATTCTCAAGTCTTATGGACAGTGGATGCAGTATTCTGTATTTGAGTGTAACCTGACTGAAACTCAGTATGCTAAACTAAGGGCGCGGTTAGCAAAACTCATTAAACCCGATGAAGACAGCATCCGCTTCTACTTTCTCTGTGCTTGCTGTCAGGATAAAATTGAGCGCATTGGTGGCGAAATGCCAATGGACACTACGGTGTTTTTTGCTTAGAGTTTGCGTCAACCAGTAGGTGTTTGAGAAAACAAATCTCATTTAATGCCTCAAAGCCTTATCCATTCTACTTTTGAAGCTGCTCAAACCAAAATGAGGTTGACGCAAAACCGGAAACTATTACCAGTCAAGCTTTTGAGCCGATTTTTACATACATCATCTTGACACTTTAATGTCTCAAAAGCTATATTGAATCGAGATTGACGGAACTGAACCTTGAAAAGTAAATACATTAAGGCTTCTAAATTGAGCA # Right flank : TATAAACCTAAACATTTGTATTGCAAATACTGCTAGAAAAGACAATAACGGCGTTGCTAATTATTTTGATGAAGTATATTTAACGTTACAATGAAACAGCATGTGCGATCGCACCTTCCCACCAGAGCCATAAACGGAGTTGCTGAGGGGTGAAAGATGGCAGCCAAAAGCCAAATCCTCATGACAAGCCAGAGTTTGAGAGCCTTTCACCCAGTTGAGTAGAAGGATAAGAACTGCGATCGGGGTGCTTATCAGGGAACAGAGAGTTAGGCGATCGCTTTGGATAACTGCGAGCGCCGCAGTATTCATAGCTTGTGTTAAAACTATACCAAGGGAGCTATCTTGGCGTAAAAATCTTCATCGGCACTCCTGAAAGCAGGACGTTGCATTAAATTGTTTAAGTACTTACTCAAGGAGTCACTATCTGATAACATCCATAGCTTCTTTACCCATAGCAAAACCCCTCCAGTCACAATATCAGCAGTCGTGAATCGATTTGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:0, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAACTAATCCCTATTAGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 2 1167473-1167203 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP017305.1 Fischerella sp. NIES-3754 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================================ ================== 1167472 24 79.2 24 T................A.C.TG. GGGAAGCCGAAGAAGGCGCGTCTA T [1167466] 1167423 24 91.7 47 ................G..G.... GCTGACTATACGATTGAGACGACGTGCCACCACGACATAACACCCCT 1167352 24 100.0 48 ........................ CCCATCACCAAGTACCATTGCGCGATGGGTAATTCAAATAACACCCCT 1167280 24 100.0 30 ........................ CTATCTCCGCTTTTTTAGCATCATTCCACT 1167226 24 95.8 0 ...C.................... | ========== ====== ====== ====== ======================== ================================================ ================== 5 24 93.3 38 CACACTCCCCACACCCCTCACACC # Left flank : CTCGCAACCGTCGTCCCCCGACTGATCCAGTCAACTCTTTGTTGAGTTTGGGTTATGCATTATTACGTCATGATGTGCAGGGTGCAATTAATATTGTTGGCTTCGATCCCTATTTAGGATATTTACATACAGAGCGTTATGGCAGACCATCATTAGCACTAGATTTAATGGAAGAATTTCGTCCTATCATTGTCGATGCAGTCGTTTTAACAGCAATCAATCGTCGCATTCTCGTACCTACAGACTTTATTACCGAACCACTCAGTAATGCTGTTTCTCTCACCAAAGAAGGCTTACATAAATTTTTGCGTCTCTATCAAGAAAAGAAACAAACAAAATTTAAACATCCCGTCATGCAAAAGCAATACACCTATCAAGAATCCTTTGAACTGCAAGCAAGATTACTTGCAAAATACCTCATGGGCGAAACTGAAAAATATCCGCCATTGATCATGAAGTAATTTATCTAGTTAGTGGTTATTGGTTAGTAGTTAGTGGTT # Right flank : CCCATGTTTATCGTCGTCAGTTACGATATTCCTGAAGATAAGCGTCGTACCAAAATCCACAATATTCTCAAGTCTTATGGACAGTGGATGCAGTATTCTGTATTTGAGTGTAACCTGACTGAAACTCAGTATGCTAAACTAAGGGCGCGGTTAGCAAAACTCATTAAACCCGATGAAGACAGCATCCGCTTCTACTTTCTCTGTGCTTGCTGTCAGGATAAAATTGAGCGCATTGGTGGCGAAATGCCAATGGACACTACGGTGTTTTTTGCTTAGAGTTTGCGTCAACCAGTAGGTGTTTGAGAAAACAAATCTCATTTAATGCCTCAAAGCCTTATCCATTCTACTTTTGAAGCTGCTCAAACCAAAATGAGGTTGACGCAAAACCGGAAACTATTACCAGTCAAGCTTTTGAGCCGATTTTTACATACATCATCTTGACACTTTAATGTCTCAAAAGCTATATTGAATCGAGATTGACGGAACTGAACCTTGAAAAG # Questionable array : NO Score: 2.51 # Score Detail : 1:0, 2:0, 3:0, 4:0.66, 5:0, 6:0.25, 7:-0.12, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CACACTCCCCACACCCCTCACACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 3 3762491-3772887 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP017305.1 Fischerella sp. NIES-3754 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 3762491 37 100.0 41 ..................................... CCCTTTTAGCATTGAGGAAAAGATCCATCTACCAAAGTAAT 3762569 37 100.0 38 ..................................... CACCTGACTTGTACAGTGCAGCGATCGCAAAAGTGAGT 3762644 37 100.0 38 ..................................... TTTTTACCCAAGCGGATACGGAAGAAAGCATCAGCCAA 3762719 37 100.0 36 ..................................... AACGTTGTCTCGAGTGCATAGCCAGCATTGGCAGCC 3762792 37 100.0 35 ..................................... CTGGTTGGTAGTGTGGTCAACAGCTATGGCTTTGG 3762864 37 100.0 39 ..................................... TTTTGATGGTTTCGGGGTCGTCTGATTCGACGGCTTCGA 3762940 37 100.0 35 ..................................... TCGAACATTTCAACGTGTTAAACAAGCCCCACGAC 3763012 37 100.0 37 ..................................... TTTACAAAAAAATCAAATAATCCTGTAATCGATACAC 3763086 37 100.0 35 ..................................... TTCTTTTACGCAGACATCTATACTTTTGCCTTTTA 3763158 37 100.0 34 ..................................... GACCAGCCTGCCAGTTTTGAAAAACATCTGACGA 3763229 37 100.0 35 ..................................... AAAAAGTATTTAGAAGAACAGAATATACCTGTAGA 3763301 37 100.0 35 ..................................... TGCAATAATTTTTATAGACGGAAATGGACAACTAA 3763373 37 100.0 37 ..................................... ACAAACAGACAGCATAGATGGAGAAAATGACGAAATT 3763447 37 100.0 37 ..................................... CTGAGGTTATTCCTGCTGAAATAGCAGAATCCCTTCC 3763521 37 100.0 36 ..................................... TGCTTGCCTGTTTAGCTGCTTCTGCTGATTTTCTGA 3763594 37 100.0 36 ..................................... TTGCTTCCAAAACAAATGACTTTTCTTTAGTACTTC 3763667 37 100.0 38 ..................................... GCGATCTATTTTGATATTAACACATCCATGAATACTTG 3763742 37 100.0 36 ..................................... ATTGTATTTATATCCATCTATGTCAATTTCAACATC 3763815 37 100.0 35 ..................................... ATCGTTTGTGCCTACACCTGATTTAGTATTTTGAT 3763887 37 100.0 34 ..................................... CTAATATTTACTTTTCTCCCATTGACACGAACTC 3763958 37 100.0 37 ..................................... AAATTTAGAAGAACTAAATGTAAAGATTTCTGACAAA 3764032 37 100.0 34 ..................................... CCTGAAAAAGAATCTACCAAAATAGCTTCATTAA 3764103 37 100.0 40 ..................................... GGGGTGCATCAATCTTCAAAGAGAAAAATTCATCCAGTGG 3764180 37 100.0 38 ..................................... ATACAATTCACCTGATAATATTTTGTGGTCTCCTGGAA 3764255 37 100.0 41 ..................................... CATTTCCCTGGGGGAGGAAGGGGACCATTTAAATGAAGTGA 3764333 37 100.0 35 ..................................... GGAATTTGCATTATCCAGCCAGAGGAATTTTTCCA 3764405 37 100.0 37 ..................................... TCAAATTATCAATATTGAGACCATATTGGCTATATTG 3764479 37 100.0 36 ..................................... ACAAATTTCAGGATTAAACGAACATTTATCGCCACC 3764552 37 100.0 34 ..................................... CTATAAAGGCCGGAGGAGTGGGTATTACTCTTAC 3764623 37 100.0 38 ..................................... TTTGCTTTAGAATTAGTTCAAGTTTTGACTTTTATATT 3764698 37 100.0 38 ..................................... CCAATAGCAGATTATTTGGAAAATCTTGAAATAGAAAA 3764773 37 100.0 34 ..................................... TCATCGCTATCTTCCATGAATTATTCAAAAAAAG 3764844 37 100.0 36 ..................................... ATAAAAATTTAATATAGTATCTTTATCTTCTTTACA 3764917 37 100.0 40 ..................................... CAATGTGTGGGTGGAATTCCACTTGAGGTCCAATGTGTGG 3764994 37 100.0 33 ..................................... CACACAGGATTTTGTCACTGCTTGTATTAGAAA 3765064 37 100.0 37 ..................................... GAAATATTTTCGGATTAGAGGAATAACTATTTACAAC 3765138 37 100.0 37 ..................................... CCGCTTGAACAACACTTCCCAAAGGATGACCACAAGA 3765212 37 100.0 35 ..................................... AAATGGAATTTCATCCAGTGGGGTGCCCCAAAGAG 3765284 37 100.0 36 ..................................... AAGATTATCTGGAAGTGTAGTAGTCAAAAATCTACC 3765357 37 100.0 33 ..................................... ATACTTATATCCATCTACATCTACATCCACTTC 3765427 37 100.0 35 ..................................... AAAATTACACTGATTTTTTCGAGATTTACACTTGA 3765499 37 100.0 38 ..................................... CAAGATATAGTATCAATCTTAAAAGGTATCAATCTTGA 3765574 37 100.0 33 ..................................... ATCAATCTTGCTAAGCTGACAAATGCTGTTTTC 3765644 37 100.0 37 ..................................... TGTGGGGAATTCCTTCAGAGGGTTTTAGAGGTTTGTT 3765718 37 100.0 35 ..................................... TGAGCCAAGGTAAGAGAGGGAGGTTTTATGCTTTA 3765790 37 100.0 35 ..................................... ATACTTATATCCATCTACATCCACTTCGACTTCGG 3765862 37 100.0 38 ..................................... AGCCTTTTAGAATACGCAAAAGAGTTTTTTTAGCTCAA 3765937 37 100.0 34 ..................................... CACAGAGACAATGTGGACAAACGGCGAACCAGTT 3766008 37 100.0 36 ..................................... AGATTATTCGGGGGTGCTTGAATAATCTGACCGTAG 3766081 37 100.0 34 ..................................... CAGGTTTTTCACCTTTAGGATTCCCAGTTCTAAT 3766152 37 100.0 34 ..................................... GGGGACTTTCAAGTACTGCCTTGACGCATTGCTA 3766223 37 100.0 37 ..................................... CCAGGAAAATTTCTAATGGGGGGCGGCCTATGTCTGC 3766297 37 100.0 37 ..................................... TAGCAAATTCAATTACTTTAAATGATTTATCTCCTAA 3766371 37 100.0 38 ..................................... GCAACTCAATGATGATTCTGTAAAATCTGCCTATGGAT 3766446 37 100.0 35 ..................................... ATTATCAAAGCAATACGGTTCGCAATACCGTATTG 3766518 37 100.0 33 ..................................... TATGAATTTTTTTTAAGAAAACCTTGAGATTAA 3766588 37 100.0 34 ..................................... GATGAAAATGGCAAACCTATTCCTAATTTTGGCA 3766659 37 100.0 34 ..................................... TATTGCTGCGGATAATTTCTGTACGACGATTTTT 3766730 37 100.0 33 ..................................... AAAGTAGCAAAAACAAAAGAAGAAGGAGGAAGA 3766800 37 100.0 37 ..................................... GATTTTAATAATGATGGAGTTTCGGATTTAATTTTTT 3766874 37 100.0 37 ..................................... TATAAAAGCTGGTATAATCATCATATTTTTTTTCAAT 3766948 37 100.0 35 ..................................... GATATTTGTGCGGCTCTTGTTAGGATGCCCGGGGT 3767020 37 100.0 38 ..................................... AAAAAAGACTTTATTTTGATTGATTCCAAAGGTAATCA 3767095 37 100.0 38 ..................................... CCCCTTGGATAGTATTTTTTATAGGTCGCAAGTAGCGA 3767170 37 100.0 35 ..................................... CGGGCAATAAACTCCACCACCATTCCTGGTGGTAG 3767242 37 100.0 34 ..................................... ATAAAAGTTATTGTCCGGATGATGAATTGCATCC 3767313 37 100.0 32 ..................................... GTTGAGTATCGCTGTAATGGTTACTGTATAAG 3767382 37 100.0 35 ..................................... CACCACATATTGGACCTCCAAAGAAAGATTCCACC 3767454 37 100.0 37 ..................................... TTTGAAACCGACTCGTGATGCTCCATTTTAACATTTT 3767528 37 100.0 35 ..................................... ATTAGTAATATGAAACTACAAAATCAACAAAAGCA 3767600 37 100.0 35 ..................................... ATTTATTGACTCGACCATGAAGCACAAGACCGTGG 3767672 37 100.0 40 ..................................... ATTGCAGATATAGCTGCTGTGACTATTGCAGATATACATG 3767749 37 100.0 32 ..................................... GAGAATTGAGATGAAGCGAATAACTTACTAGA 3767818 37 100.0 34 ..................................... ATTCTTCACTGAAGGCAGCGCAACTACCGGAGAT 3767889 37 100.0 35 ..................................... GAATATTTTGTTGACTAATTGTTGTAATCCATATG 3767961 37 100.0 36 ..................................... TAAATCACCCCAACCAGATTCCAGAACTGCACGAGA 3768034 37 100.0 33 ..................................... TACGAAAGGCGCTATTGTGATGCTCGGCCTACA 3768104 37 100.0 35 ..................................... AATGATTGGTCGAATGATGAAGAAACTTTAGGAGA 3768176 37 100.0 35 ..................................... CGAAAAGAAATTTATTATCAAATATCTGGTTTAGA 3768248 37 100.0 36 ..................................... ATTTGGAAACATTAGTATAGATTCTGCTAGAAAAAG 3768321 37 100.0 36 ..................................... CAACCAATCAAAAACTTTTATTTATGATATCACCTT 3768394 37 100.0 35 ..................................... ATTAATTGTGAATAAACAACACAAATTAAAAAGCC 3768466 37 100.0 33 ..................................... GGATTAGGATAAGCTGCAATATTTACAGTATAT 3768536 37 100.0 32 ..................................... AAAAAGGAGCTGTTATGCCAGCACCTTTTACA 3768605 37 100.0 35 ..................................... TTTTCGGCAAATTTTTCTAGAAGATTTTTCAATAT 3768677 37 100.0 36 ..................................... GAAAAAGGCTTTAATCCAGATGCCATAAAAATGGCC 3768750 37 100.0 38 ..................................... AAAATGGAATTGATTTAATATCTTTAAATCTTCTTCAT 3768825 37 100.0 38 ..................................... GAATTCCTCAGGATCGCGCACAGGGGGCATTGCCGCGC 3768900 37 100.0 35 ..................................... GTATCACATCGATATATGCATTGACCTGACTTTCA 3768972 37 100.0 40 ..................................... TCCCAGTAGTAAAACCTGCGCCAATTGCGGACACATTTTA 3769049 37 100.0 34 ..................................... TTTTAATTTTTTCCACATACCAATACCACCGATA 3769120 37 100.0 38 ..................................... ACTGCGGTCAACAAGACAAATAGAATTAGGTAAGCCGT 3769195 37 100.0 36 ..................................... CTAACTAGACTTTAACTAGATTTAGCTATTAGCTAA 3769268 37 100.0 36 ..................................... CGCACCAGCGTTAATACCATCCAAAATGTTGTTGGC 3769341 37 100.0 37 ..................................... AAGAATTGCCCGCAAAAGAGTGGTGCAAGAGATTAGG 3769415 37 100.0 37 ..................................... TTTCCCAGGACTGGGAATGGAAGCGAGCGCTGCTAAA 3769489 37 100.0 36 ..................................... ATTGAATTTAGTTTAGAAAATCCGTTTACGGTTAGT 3769562 37 100.0 38 ..................................... GCACCAAATCTGGAACTCTGCGGCGGACATTTTCACTT 3769637 37 100.0 31 ..................................... TTAAAAAACGCGGGGATATCTGTTCTTTCAC 3769705 37 100.0 36 ..................................... ATTTATATAAATCAAGCGAAAGTATTTATTAGCTCC 3769778 37 100.0 34 ..................................... CAAACCCAACTCTGACGCGGAGAAATGCCCATCC 3769849 37 100.0 34 ..................................... TTTTTCTTGCTTCATCTAGCTGAAAGTCGTTTGG 3769920 37 100.0 39 ..................................... TTTGCATTCCATGAAGAGAGGATGAAAAATCCCTTGTTT 3769996 37 100.0 38 ..................................... TGACCGCTACTGCTTGCATGATTTGGAGGAATGCGCCC 3770071 37 100.0 33 ..................................... TTATCGCTTTAGTGCCAACAGCGCAGGGATAAA 3770141 37 100.0 36 ..................................... TCACCCCATCAACTACCAACCAAGCCCCATTATTTT 3770214 37 100.0 39 ..................................... TTTTATAGAGTTATATAGATTAAGAAAATGGGATTATCT 3770290 37 100.0 32 ..................................... TTTGTTAACCGACTAAAACAAAAGCGCGGTGA 3770359 37 100.0 33 ..................................... CTCACAAGTATTACGCACAGGATTGCACCGCGC 3770429 37 100.0 36 ..................................... CCGCTTGATTTAACAATTGGGCAATGGCATTTACCA 3770502 37 100.0 36 ..................................... ATTTATAACGAATTGACCAAGTAACTTTGCTGTAAT 3770575 37 100.0 39 ..................................... AATCTTGGATTTGATAACACGGGAACCGCCAATATTTAC 3770651 37 100.0 37 ..................................... TTTTTCTGGAGAACCCGGTAAATCAGATGATGTGTAC 3770725 37 100.0 37 ..................................... GTACAGCACCTCAAAGCCACGACAACGAAGTACGAAG 3770799 37 100.0 35 ..................................... CTCAATCTGGAGGTATTGCAATGCCTTGAGATAAG 3770871 37 100.0 36 ..................................... TGATATCCCAGAGATAGATCCTTACGACCAGTTTGA 3770944 37 100.0 35 ..................................... GCGATAGATACGCCACAAGACATACAAGACAGAGC 3771016 37 100.0 35 ..................................... CTATAGGCATTTTTAAAAATCTAATATTTCAGAAA 3771088 37 100.0 36 ..................................... GCAACCCTGAAATCATAAAAGATTAATCCTCTTTAG 3771161 37 100.0 33 ..................................... CCCACCAGCGATCGCACCCTCGCACCCACCCCC 3771231 37 100.0 38 ..................................... CCCACCAGCGATCACACCTATGCACCCCACGTACCAGT 3771306 37 100.0 35 ..................................... CAAATATCTATTTGATGATGAAATAGAAACAATAG 3771378 37 100.0 38 ..................................... AAGATTTTTAAAAATTTTCTAAGCACCCGTACCCACCT 3771453 37 100.0 37 ..................................... TCAAATAGATCTAGATCAGCTCCAAAAATTTTCTCTA 3771527 37 100.0 34 ..................................... TGAAAACGCTTGAATAATTCTTCTTTCAATAAAA 3771598 37 100.0 38 ..................................... GCAACTCTGCTTGCTTTTTATTCATCTCACCAAGTAAA 3771673 37 100.0 36 ..................................... GAGACTGAGATCTTGCATTACGCTCAATTGTTGCGA 3771746 37 100.0 39 ..................................... CCACTGCCTCGTAGCACTTACTCGCCAATTCAACCCATC 3771822 37 100.0 37 ..................................... TTTGAGTTCGCCCTTATCGAGTAGAGAAACCAAGTTT 3771896 37 100.0 32 ..................................... GAAGGCTTTTTCATCACCTCTTGCCAAATTAA 3771965 37 100.0 35 ..................................... AATCCATTTCTAGATCCAATAAATCTAAAATGTAT 3772037 37 100.0 37 ..................................... TTTTATGATATTAAAAACAGCAAAGTATTAGGCGTAG 3772111 37 100.0 37 ..................................... AGATTCTGGTATTTACAGAACACCTGTGGGATTGTGT 3772185 37 100.0 38 ..................................... TTTTCAGGATTTTTTGAATTCGCGGCTATTATGGATAA 3772260 37 100.0 38 ..................................... ATTCACTGTTCCCAATTCAATGGTTTTTCAGAAATTTC 3772335 37 100.0 35 ..................................... GCTAGTGCTTTGTCAGTTAGAAATTGCACATCATT 3772407 37 100.0 40 ..................................... ACGCACTCCCTCTGGTCACCAAACACAAAATAATCCCTGA 3772484 37 100.0 35 ..................................... CAATTGCATCCGGACAAAGGGTGCAACAGCCCCCT 3772556 37 100.0 37 ..................................... AAGACTCGAATTTTTGATCAAAAAATTTTGAGATACC 3772630 37 100.0 35 ..................................... TCTCATGGCTCAAAAATTTGAATCGGGGGTTTGTT 3772702 37 100.0 37 ..................................... AAGTTTTTTACTTGCTTCCCCTAGGATAATTTCTATT 3772776 37 100.0 38 ..................................... TATCACCCTCGAATCCTGGATGAAGATACATCTATTCT 3772851 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 143 37 100.0 36 GTTGCAACTTAAACTAATCCCTATTAGGGATTGAAAC # Left flank : TCCTGAAGATAAGCGTCGTACCAAAATCCACAATATTCTCAAGTCTTATGGACAGTGGATGCAGTATTCTGTATTTGAGTGTAACCTGACTGAAACTCAGTATGCTAAACTAAGGGCGCGGTTAGCAAAATTCATTAAACCCGATGAAGACAGCATCCGCTTCTACTTTCTCTGTGCTTGCTGTCAGGATAAAATTGAGCGCATTGGTGGCGAAATGCCAATGGACACCACGGTGTTTTTTGCTTAGAGTTTGCGTCAACCAGTAGGTGTTTGAGAAAACAAATCTCATTTAATGCCTCAAAGCCTTATCCATTCTACTTTTGAAGCTGCTCAAACCAAAATGAGGTTGACGCAAAACCGGAAACTATTACCAGTCAAGCTTTTGAGCCGATTTTTACATACATCATCTTGACACTTTAATGTCTCAAAAGCTATATTGAATCGAGATTGACGGAACTGAACCTTGAAAAGTAAATACATTAAGGCTTCTAAATTGAGCT # Right flank : CCCGTAGTATGCATTTGACAAATTAAAGCTTACTGCTTGAGATTAGAACTTAAAGGCGTTGCAGAGAAAGCGGGATGGTTTTATTTTATCTTTTAATTGACAAAAACTTAATCCTTGGCGCTCTTGGCGTCTTGGTGAGTCCACTTGCCGTCTTGGCGGTCTCCGTCACGATGGCAAGGTGGCGAACCCGGAGGGTGGTTCATTATTCATCCCCATTTTATGCAACGCCCTGGCATTAATCCCTATTTGTTGACGTCTTGTAAACTTACACAACAACCGCCAAGCAAGACGACTATAAAATTTATTAGTCTGCTTCAAGTAGACTTGAACTATTAGCTCGCAGTTTACTTGCGGGCTTTCAGGCTTTCAGGCTTGCATATTCAAAAACAAAAAGGTAAGAGAAAAGATTTTTCCCTTACCCAATTCTCATTACCCTTGACACCGAAGCTTTAGTAAGCTCTGCGAGTAAATTGGTAATATAAGAAAATTGCAATAATTGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAACTTAAACTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 4 4973920-4971932 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP017305.1 Fischerella sp. NIES-3754 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 4973919 35 100.0 37 ................................... TCTCGATAAATTTAACGCCAGCATCACTCAGGCGAGT 4973847 35 100.0 38 ................................... AAACCGAAACTTTCTGCCAACTTCAATGCAGCTTGAGG 4973774 35 100.0 40 ................................... TGTCAGCCCATAATCGTTACCGCTATCGAGTAGCGTGGTA 4973699 35 100.0 36 ................................... AAGAATGAGTATGGCAAGTGGGGCAATGTTGATCCC 4973628 35 100.0 38 ................................... AAACCTGATTGGGATCCGGAATTGTTGATGGGAGAGTT 4973555 35 100.0 36 ................................... GATCCAGTTCGTCCAAATCCAAGTCCAGCAGACACA 4973484 35 100.0 36 ................................... ACATCGGGGTTCTTAAATCCAGTGACTGAGACACCG 4973413 35 100.0 37 ................................... AAACTGGGCGTTGCGGTTTGAATCATTGCCAAGCATG 4973341 35 100.0 38 ................................... ACTTTTTGCAAATCAGATTTTGCTTCTAATCGCTGGGA 4973268 35 100.0 38 ................................... TAAAATTTCCAGGTGCCGGGCCATATACCAGCACTAAT 4973195 35 100.0 37 ................................... TGGAACAAGGAAGCATTACCACCAGACCATTGCTCGA 4973123 35 100.0 39 ................................... GCTGTCCAGGGTTGTAGTTCGGATCAAGATAGCGTTGAG 4973049 35 100.0 37 ................................... TATCCAGATCATCATATAACGCTTTTACGTTTAAGTA 4972977 35 100.0 37 ................................... AATATAGAAACAAAGATACCAACTAAAGCAAGAATAG 4972905 35 100.0 35 ................................... TGTAAAAATGGGAAATAATCCGTGCAGTATTCAAA 4972835 35 100.0 36 ................................... CATCGAGAAGGCGTTGTACCTCCATCAACACTTCAG 4972764 35 100.0 39 ................................... TTTGTGTTTTCTCTACAGATGCTTGAACTAAAGACTCAT 4972690 35 100.0 35 ................................... CAGAACCAGTGAGAAACCGAATTTGGGAAGCAGAC 4972620 35 100.0 37 ................................... GTTGCTTCGCCGCTCTGCTCAATAAGCGTTAGCATAT 4972548 35 100.0 38 ................................... CACTTTTGTGGACCAGATTGGGCGGACTTTGCCTGAAT 4972475 35 100.0 37 ................................... CTGAATGCCGGCATCCCTTGAAAGCCTTAGCAGAAAT 4972403 35 100.0 36 ................................... TACATTTTGCTCTGCGTTGGTTTTGACGAAGTTGTT 4972332 35 100.0 39 ................................... AAGTTGAATTCCAGTTCAGCATCCAGCGGAAGCAAAGCA 4972258 35 100.0 42 ................................... TCAGTAATTGGCAATGTCCCAACCAGCCCCGAAGTAAAACTT 4972181 35 100.0 37 ................................... TTGCTGTAAAGATTCCTGATTAACCAGGATATTACAG 4972109 35 100.0 35 ................................... CAGCATGAGCAGGGGCAATGCCGATCGCGAGAGAG 4972039 35 100.0 38 ................................... TTTGCAGGATAGGAAGCAGTTGCATGAGCGGTCTGGAT 4971966 35 82.9 0 .....C.T......C...T.........C.G.... | ========== ====== ====== ====== =================================== ========================================== ================== 28 35 99.4 37 GTTTTAAATCACTTACCCCTCACGGGGATGAAAAC # Left flank : TTGAAAAAGTTTCTCAAGCACTGGGAAGAAAAGCTGCAATCTGAGTTAACGCACCCAAATACAGGATATAAAGTTAGCTTTCGCAGGTGTTTAGAGTTACAAGTGCGGGAGTATGTAGCTTGTCTGATGGGAGAGGTGAAGATATATAGACCAATGATTTGGAAACCTTAATAGAGAGATTGCATTGTGTTGGTTGCTATGCTATTGTTTACACCAACACCTGTACCTTGAAAACTTAATCAATACATATTCTCTGCTTGTAACCTGATAGTTAGTTTCCTTAAGGCATTTTGTTAAGAAGTGTAAACTGAGGGGGTCGTCTAACAGACCAAAGGCTGATTGTTTCGTTGATCCCCTCAGATAACTTAATGTGTCAGGGTTTGAGTTAGTTGCAGACTCTAGTTATTGTCAATAATAGTGGTTTATTGACAGGTAAAATAGACCCCCCTCAGTTTTACAGTTCTGTAAGCTTTATTTGGCAAGCTTTCTGTAAGAGTAGA # Right flank : CACTATCGTTAAAAGCAACAGCGCCTTCAGGGGGACGGAAACATGTAGAGACGTAGCAATGCTACGTCTCTTCCCTTTCACGGGGATAAAAATGCTGGCGTTGCTGAATTTGGTCACACCCGTAAATTGTAAATTCATATTTTGATTCAGCAACGCCAAAATGCTAATCATAACAATTTCAAAATTCAAATATTTAGTTTTTATTTCCAAACATAGAGAAACCCGGCTTCTTGAAGAAGCCGGGTTTTTTGATATTTGAATTTTCACAACCTATCTGAAATTGCTGTAATCACAACTGATATAACTCATATACGAAGTCATATAAAAATTACTTGGACGCAGATACGAACTCATATATGCCTTTGAGAAGATGAAATTAAGTAAAAAGTAAAAATTTCAAATGCAAAAAAATCTTATCTTTTTACTTTTTACTTTTTACCTTTTCTTTTACTTCATTTAACCTATGTCCACAATTTATATTACCGAGCAAGATGCAATGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAAATCACTTACCCCTCACGGGGATGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 5 4981776-4981521 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP017305.1 Fischerella sp. NIES-3754 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 4981775 35 100.0 41 ................................... TCTAATCCCACCCAAATCCCAGTGGCGTTGTCTAACCCTAT 4981699 35 100.0 38 ................................... AAAATTGGTGATTAGTTTGATGGTTGAGGGTGCGGTGA 4981626 35 100.0 36 ................................... GGGAATACACAAAAAACCTCTTCCGTGAACGGGTGC 4981555 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================= ================== 4 35 100.0 39 GTTTCCGTCCCCGTTAAGGGGAATTGAATGAAAAC # Left flank : AAACGGCGGTGTCCGTATCCAAATAGCCACCACCATTAGAGGCTAATTCTTGGACTGCTTTAATATAACTTGGGTTGTGTGCTTCCTCCATTAGCGATATTAAAGGACGCTTTGCCACTGGCGTGGGCGATCGCCATTCAATTTGCCAAGCAAATGGCGCAGTTTGTAGGGCACTAGTAATAGCACTCAAGCGTTCTGGTTTCTCAGGATGGAGATACCCAGTTTTGTGATCCAGAAATTCATCAGAGTAGATAACTGTAAACATAGCCCAAGCAAGATTGGCAACGGGATACTGATTGAAATTGTATCTTCCCTAATCTTCTGTGAAACTGATGATTTCGTGACTTGGGTTATCAGGCATTTCTAGCACAACTGAATAAAGTGACATCCTCCCACCACTGACTCGGGGTACCGAGTACAGTGGGGGCTTCCAAGAATCACTTCCTGGGTTTTCCTGCTTCATTATGAGCTAAATCGCTTACCTCAATTGCATTATCCAT # Right flank : GTCTACTCTTCTGGAACCCTTGCCACAACTGGGTTTGAGAATACCATTTTCGCGGGGGGTCTATATATTGCTGTCAATAAACTTATTTTAATGATCAAAAGCACTGTTTACAGCTACCTTAAACCCTTACCTAGCAATGCTTTCGCGGGGGTCAACGCTAGAATCAGGGTTTGGGAGTTTGTCATACCCCCGCGAAAAATTTAAGTATTGAAAGTCAAAACAAATACACCTTTGTTCAATTGGAAACTTTTAGATTAAATTGTCAAGGTTCTGTTAAAGTTTTACTTTGACGGCTAATAGTATAACAAACTACTCCTGACCAAACAAGGCAAAAGTTAAACTTTTAACTTGTCAGTTTCCCCCTGACAAATCCATGCTCCCCAATAAAAGGGATGCTCCAGTGGCGTATCTTCTTCATGGCAATCAATTTTACTTTGTGCTGACAACTCGTTCACCGTCAATAGTTCCTTCAAAACTTCTAAACCCAAAGCAGACTGCCG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTCCCCGTTAAGGGGAATTGAATGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.29%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.64 Confidence: HIGH] # Array family : NA //