Array 1 5773-7564 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPES01000049.1 Haloferax sp. ATB1 scaffold49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 5773 30 100.0 36 .............................. ACGCTGTCTGACGACACGCTGTCGATGAAGCGTCTC 5839 30 100.0 34 .............................. AATGTGCGTCTCACGAAGTGGTTTGAACCATATT 5903 30 100.0 37 .............................. TAACGCTTCGAACGCGCGAGCGCGTCCAGTGGGCCAT 5970 30 100.0 36 .............................. GCTATACGGCGCGAGAATCGTGACGGTGAGTTCCAG 6036 30 100.0 35 .............................. ACAGGAACCCGCCCCCGACGGTGAACGTCCCGGCG 6101 30 100.0 35 .............................. TCGATCTTGAACGCCGTCGCGAGGCCGTCGACCAT 6166 30 100.0 37 .............................. CCGATTCACTCGGTCGCCGAGGTTCGATGGTTCGACT 6233 30 100.0 35 .............................. AAAGACTACGCTGCCGAGAACGGCTACGACATCTC 6298 30 100.0 36 .............................. GCCGAGTCGCTCTGGCCGGTCGGTGTCGGTGTGAAC 6364 30 100.0 35 .............................. GCGGAGGATGCGCTCCATCTCGGGGACGCCGATGC 6429 30 100.0 36 .............................. ACAGACAGCGGCGACCCCCAAAAAGCCACGTGTGTT 6495 29 96.7 35 ..............-............... GCGAAGTCGAGGCCGGCGTACCACTCCAGGGCGTC 6559 29 96.7 35 ..............-............... GACGTGGAGGACGCCGGCACGCCGGTCGAAGTCAA 6623 30 100.0 38 .............................. CACAACGATGCGCACTTCGGCGCGGGTGCAGGGAGCTA 6691 29 96.7 36 ..............-............... AACCTCTCGCACTCTATCCTCGCGACGCCGAACGTC 6756 29 96.7 38 ..............-............... ACCGCGAACGTGACGACGCCGACCGAGACGACCGTCGA 6823 30 100.0 34 .............................. CGGAATACGCGACGGCGTCCGAACGTCCCCGAGA 6887 30 100.0 36 .............................. GTGACACGGCCGTTGTTCGCGAGCTCGACAAGGAGT 6953 29 96.7 36 ..............-............... ACCAGACGAGGCCAGTTCGGGCGGCCAACCGGCGGC 7018 30 90.0 36 ............T......A.C........ GCCATGTTGAGCGTCCTCTCGCCCATCAGGACGGTC 7084 30 86.7 39 ........A..G.............A...T CTCGATCCGATTACGCTCGCATCGGAGTGAGCAGCCCCA 7153 30 86.7 35 ...........C..G.....A........G GACCTGGCGGCGCTGACGCCGAACGACCTGATACT 7218 30 93.3 37 ...............C.....T........ ATCCCGGTGATGCTCGGTATACTCATCTCCGTGGCTA 7285 30 86.7 36 A..........C..GC.............. CAGTTGTTCGGGACGTTGAGTCCGAAATGGGACATC 7351 30 83.3 35 .......G....TT.......A.......T CTCATCCTCGGGGAGCGCGCCGAGACTATCTTCGG 7416 28 83.3 36 .............T......A--.....A. GTCACGAGAGACGAGAGGTCCTCGATGGCCTGCTAG 7480 30 76.7 23 .......T......G.....AA.A.T.C.. GCTTGATGACCGGTCTTATCATG T [7499] Deletion [7533] 7536 29 76.7 0 .......-.TGT............CA.C.. | ========== ====== ====== ====== ============================== ======================================= ================== 28 30 94.5 35 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : GACTCTTCATCTGATAACATGCGCAAGGCCGCTGAGTGGATGGTCCCGTCCGATGACCGAATCTTGGAACTGATTCGGGAACACGGGAATCTGACGCCGCAAGCGATTAACGAACTTGGTGGCCCTGTCCCCGATCACGCGAGCACTCGTTGCTCGAAACTCGTGAAACACGGTCTCCTCACTCGAATCAGTCGAGGTCTCTACGGCATCACCGACGACGGACTCGCGTACTTGGACGAGGACCTGGACGCCTCGACGCTGGAGCCTGTCGACGACGAGTAGTTGTTTTTGTGATGTCTCGCTGTTCGTGAGCACGGCATGCTAACTGAGGCCGGTTGCTTAGAAAGGGATGATTGGGTCGTGTCCGGATTGGCCGAACCACGTTGTCCGATTTTTTAGCTTCCGTCGACCCCCCGGGGGTTTCGGGTGAATTGGGGGTCGACGGAAACACTCATCAGAATTCAGTACACACGGTTCTTCACACCCGCGGATTCGGGTAG # Right flank : CTGACCACTACCGATTCTCAACTCATCGGTAAATTTTAACTTCCTCGGACTGAAGCCTTCGTAAGAGCATTTATTAGAGAGACCCGTGAGCCATGAAATTCGACCCAAGTGAACTGTCTGGTGATACAGACGAGATTATCTCGTTGTTCATCGATTATATCACACGGACAGATGAGGAGATTGAAGACGAGAAAGACCGCGGTCAGCGGAAGACACAGGTCAAAATCTTCCTCGCGAACAACCATGGTTTTGAATTGGGTTCACTAACCGACGAGATTGAATACCTCGCCCAGACAGAGGGTCTTTCCGAGTACATTCAGCGGTATATTACTGAGCACAATTTTCACGAGGACCGCCTCGGTGACGATGTCTCGTACGTCGAAATCGACACACCGAAACGAGCTCGCACGGACCAGTTTGTCTTCATCGACGATGGCGATTACCTCCGAGTCATTACTGCGGAACGTCGGAAGTGGACGGAAAAAACTGTTGAGAAGCTC # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.20,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-47] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 9956-10906 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPES01000049.1 Haloferax sp. ATB1 scaffold49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 9956 30 100.0 36 .............................. ATAGGTGTGTGGTATCGTATGGCGTTGCCACTCATG 10022 30 100.0 37 .............................. CCCGGGTTTGGCCGGGCGGCCGTCCTCGAGGCGACGC 10089 30 96.7 36 .....................C........ AACGAGCACGTGGCGGCCGCGATAACGAACGAAGAG 10155 30 96.7 36 ........T..................... CCGAACGCTTGGACCGGAGACAAGTCGACTTCCGCA 10221 30 76.7 37 A...T.....G.....C....GA......A TTCTTGAGCGCCGAGTAGCCTTCTGCGCGTATCGAAC 10288 30 96.7 35 ..............G............... ATGCTCGACATCCGCCGTGCAGGATGGGAGAATGG 10353 30 96.7 35 .............T................ GAGCTGACGCATCGGCACCGCGCCTGACCGGAACG 10418 30 96.7 36 ............T................. CCGAACGCTTGGACCGGAGACAAGTCGACTTCCGCA 10484 30 90.0 36 ...........G........TA........ ATCGTTATCGTGCTGGTGGTCGTCATTGGGTACTTG 10550 29 86.7 37 ...............A.A...-.......T GAGTAGGTCACGGAACCGCCGGATGTCGTCGCGGCGT 10616 30 86.7 37 ........T..C..G......G........ ATTCCGGTGATGGTTGGTGTACTCATCTTCGTGACTA 10683 30 80.0 34 T..........GTT.......G.......T GCGGAGGAGGACGGCATCCTCGGAGACATGGACA 10747 30 90.0 35 ...........C..G......G........ CGCACGGTCGAAACGTTTGATCCCGAAAAGCAGGA 10812 30 83.3 35 ...........C..A......CC......T GACCCGTTCCCGACCACGCGGGAGGATGCGAAGGC 10877 30 96.7 0 ..............G............... | ========== ====== ====== ====== ============================== ===================================== ================== 15 30 91.6 36 GTTTCAGACGAACCCTTGTGGTGTTGAAGC # Left flank : TGACCGAATTTCAATCTCACCGTCGGATGTCATGGAACGCTACCGTCACAGGGAGATTCCACTCGAGAAAGTTCGGGATGCATTACGATTTTTAGAGAAGATTGGCGGCTGTCGTCAGAACGCTGATGGGGAGTTTGTGTTCGGGACTCATCACCTCGGAAACCTATTGCAGGTCCAAGCAAAACTGGAACAGACTCGAGTGAAAGATTATCTTGATGGCGAAGAGGCAAACCAGATGAGTCTAGGAGAGTTTGCTCAAGCGACAGAGACGAATGGTGGGTCAGAAAACTAGTACCACACTACGACATTTTCACTTTGTCTTGTTCTTTCTCATCAGAGAAGCACTCACGAGCTCTCGACTAACATCGTCTTCCAACTCTGCTGTCGCCCTTGGTTCTCAATTCTCTTCGACCCCCCGGGGGTTGGATGAATTGGGGGTCGACGGAAACACTCATCAGAATTCAGTACACACGGTTCTTCACACCCGCAGATTCGGGTGG # Right flank : CGCAGCGATCAGCCTCGCGACCGCGTCGGCGTGCAGTTTCAGACGACTCGTGAGGTTGAATCCCTACCGAAGTCTCCTACACAGACCTACGTTTTGCTTCTTTGCACAGACATCTCCATCTACTCTACTGCGAGAAAAGATATTTGTGTGAGAAACATGATGTGTTCTCTGAATCAATGAAATGTAAACCCAAAGTCAGTAGCGTGCGAGCGTAGGAGATGCGACTGTTAACTCGACTCCGCGCTCGGAGCGACGCAGCCTACGATAACGCGTATCACCACAAACTTCGGGGACGAATTTGGCGTGCCTTACGAGGCACCAAATACGACGAGTATCACGATGCAGATCGTCCAGTTGGGTTCAGTTACAGCAATCCGTTCCCTCCATACGATATGGAAGAAGGTGACGAGCGAACCTTGCTCGTCGCCGCCCCCCAGGAAGACCTCCTCGCAGAGGTGGCTGAGGACTTCATCACGGACCGTGAACTGAACATCGGGGAG # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.58, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGTGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.70,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 19116-19933 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPES01000049.1 Haloferax sp. ATB1 scaffold49, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 19116 30 100.0 36 .............................. TCTGGGCAGACCTCCTCGCACACAGGTCGGGTTCGC 19182 30 100.0 35 .............................. GACGCTGTTCGGAGTGCCTCTGCGGTCGTCGACGC 19247 30 100.0 36 .............................. GACGGTGGATGGATAGCGAGCACAAAATCAGTCCGG 19313 30 100.0 36 .............................. GACAACGTCGCCATCCTCGACGGCGTCTGCCCGCTC 19379 30 100.0 36 .............................. GCGTTCTTGAAGTCGCGAGCTGTGGACGACGAGTTC 19445 30 100.0 36 .............................. CGGAGGCCACACCACTGAGTGCCGGGCCGACGACTG 19511 30 100.0 35 .............................. GTCGCCTACCAGAAGCCCAAGACGTCGAAGCGTTT 19576 30 100.0 35 .............................. GAAACCGAGCAGCGCACCATCACCCGAGACGAACT 19641 30 100.0 35 .............................. GTGCTCTGGGGAGTCTGGACGTTCGGGACACTCAA 19706 30 100.0 34 .............................. GTGTTCAGGCGAAGCAGGTTCTGGAACGCGTCAA 19770 30 100.0 37 .............................. GTCTCGACGTTGTCGTAGGTCCGGTTGATGTATCGGA 19837 30 96.7 36 .............................C AGCACGTGCCGCAGCACGAACATGAGGAACGCGAGC 19903 30 100.0 0 .............................. | C [19932] ========== ====== ====== ====== ============================== ===================================== ================== 13 30 99.7 36 GTTTCAGACGAACCCTTGTGGTGTTGAAGA # Left flank : TGGAAGAGACAGTTGAACACCCGAATCTGAAGCGAAAAGTGAGCTACCAGTACCTCCTCAGGTTAGAGGCATACAAGCTGAAGAAGCACCTCGTCGCGGGCGAACCGTACGAACCGTTTGAGCGGTGGTGGTGATGTACGTCGTTCTCGTGTACGACATGGAAGCAGATCGTACTCAGAAGATGCTTCGTCTTGCGCGGCGATACCTCACCCATGTTCAAAATTCAGTACTTGAGGGAGAGATCTCGGCCGGCGACCTTCAAGAACTCCGTGGCCGGATCGAAGACTTGCTAAAAGACGGGGAATCGGTCGTCTTGTACGAATTGTCTTCGGACTCATTACTTAACCGGACAGTGTACGGCCAGGACCCGACTGAAGATTCTCGGTTTATCTGAAGGTAGTTTCCATCGACCCCCGGGGGTTCAGGGGTGATTGGAGGTCGACGGAAATTCTATGTATTAGGCAGCCATTTTGGGGTCTGAGGCCCCTGAATTGGGTATG # Right flank : AGGATATCCCGGCCGCCGAGGGTAAACTGTGAATCGTTTCAGACGAACTCCTGTAAGATTACACTCGGTTGACGAACTAGAACTATCTCTTAGAGGACGAGACGGGTAAAGCGTATTTTCTATGTAGTCAATGCGTCCTCAGACCCATCACCAAACGAACAGTATCCTTTGGGCCACCTATATTTCCAACCTAGTAGATATATGTTCAAGCGTCTCGTAGAGCCAAGTATGCCCGACGAAGATCAGAACGACTCCCGAAATTCGATGACCCGTGGTGAGCGAATCCGCGCCGCCGCCCGAACGCTCCAAACGCCTCGGACTGCGTCGTGGGTCGCGAACGAGACAGAGACCTCCGTCAAAACGGCACAGAAGTACCTCGACCAACTCGTCGAGGACAACGTCCTCCGGAAGATCGAACAGGGGGATCAGACACTCTACTGCGTTGACCAGCTGATGGCGACCTACCGAGAGGTCGCAGCACTCCAGCGAGAACACAGCCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGTGTTGAAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.61%AT] # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 21993-21042 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPES01000010.1 Haloferax sp. ATB1 scaffold10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 21992 30 100.0 35 .............................. GTGGTGTTGTTATAGCTGATGTTCATGAGGCCCGC 21927 30 100.0 35 .............................. CTCACGTTCGGTTTGGTCGTCGCGTGGCTCAAACG 21862 30 100.0 36 .............................. GGTTCGATCGCGGACCTCGAACAGGTCACAGAAGGG 21796 30 100.0 34 .............................. TCGGCGACGCGTCGATGAAAGCAGACCTCGACGT 21732 30 100.0 36 .............................. ACCATCGCAGAGGACATGGCCGATCGTTTCGACCTC 21666 30 100.0 36 .............................. TCACTTCGACGTTGCCGAGATCGGGGAGCACTTCGA 21600 30 100.0 33 .............................. CGCGGAAGACGAAGTCGCCCTGCCAGCGGTAGA 21537 30 100.0 36 .............................. ACCGGGTTCTCGACGCTCTAATGGCTGACTTCTCAG 21471 30 100.0 35 .............................. CGGACGTGTGAAGCCTGTGGCGACGTTTATGCGGC 21406 30 100.0 38 .............................. GACGACTTCGAGGGGAGCCGAGCAGTCGGGACACTCGA 21338 30 100.0 37 .............................. GCCGTGTTCGCGGGCCTCGTAGACCTCAGCGGGCGTC 21271 30 100.0 36 .............................. GAATTGAACAAGACGTGATCAGGGTTAGTGTGGTCT 21205 30 100.0 37 .............................. GGTCTCGAACCCGCGCACTCGTCTTGGCAAGATGCCG 21138 30 100.0 37 .............................. CAAGCCTTCGAGGAGCTGTACACGCTCGACGACTTCG 21071 30 96.7 0 ........A..................... | ========== ====== ====== ====== ============================== ====================================== ================== 15 30 99.8 36 CTTCCAGCCGGACCGTAGACGGGTTGAAGC # Left flank : GCTTGACCGAACCGTCAATCACCCACGCCTCAACCGGAACGTGAGCTACAAGACACTCGTCCAGACGGACGTCTATAGCCTCAAAAAACACATCCTCACCGGAGAACCATACCACGCAACGGAGCGCTGGTGGTAATGTTCGTCCTCATCGTCTACGACGTTCCCGCGGGACGGACTGAGCGCTACAAGAAAATGCTCCGCCGCCGCCTCGAACACGTTCAATACTCGGTCTTCTACGGTGACATCACGCCTGGGCTTCTCGTCGAGATCAAAAACGACATCGAAGATCTCCTCGAACCCGACGATTCGATCATCGTTTTCGAAGCCGAACGCGTCGGAGCCGTCGATCTCACCACGTACGGCGACACCGAAGACCCCGGAAGCCGCTTCACCTAACCACTTCTGTCGACCCCCCGGGGGTTGACCCAGAATTGGGGGTCGACAGAAACACTTGAGTGAATTCCCCAAGAAGGACCGCTCACGTCCGTAGATCGGGCATA # Right flank : GCCCGGTGATCGTTCGTCTCCCCGGAGCCTTGAGCTTGCACCTCTAGCTAGTCGTGGTACTCAACTGCCGACGATAATGGAGTGCGTCGTCGGTTACCTGCTGTGGTTGTTCCACTTTGGTGGTAACCCGTGATTCACCAGAGCCAAAATTATGGCACTCTGCCTCGTTAGGGAGCGTCGCTAAGCACTTCGAGGTATGTCACGTGGTGCTCAAGTTCGTCAATTCTTGCAGCGTCCAGACCTCCTGTGTTCAGTTCCTGTCCCGTGTGGAGTGCCTGTGCGAGCGGCTGTGACGTCTCCCCAACAGTCTCTGCGGTTTGGGTGAGGTGCAGCGCGAGCGTTTCGCGGGCGATCTCCTCCCACACGTCTGCTTGGGCCTAGTCACCGATCGCTCTCACCCCGCACAGCACGGCCGGTTGGACAGTCATGCACCTCGATCCGTTCGGGCAGGCCCACACGGCCACAGCCGGGACAGCGCCGGAGCGACGTTGGGAGTGTCT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCAGCCGGACCGTAGACGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 2 32381-35561 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPES01000010.1 Haloferax sp. ATB1 scaffold10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 32381 30 100.0 35 .............................. TCAGGTGAACGACGCACACGGAACGGACTACGAAG 32446 30 100.0 37 .............................. TCCACAGTCGCGGAACCTCTGGCGTGCACGATTCATC 32513 30 100.0 33 .............................. GGCACAGAACGTCTCGAACGCGCAGAAGGTCGT 32576 30 100.0 34 .............................. TCCGAGAGCGCCTCACGACGACGCTCTCAGTTTA 32640 30 100.0 35 .............................. GAGCATGGTTCCGCCGTTGTCGAGTTCGTCGACGG 32705 30 100.0 37 .............................. GACCACGTCGAGAGTCGACGCATGAGACGAGGCGAGC 32772 30 100.0 34 .............................. GGCGACCAGGAGGACGACGATGCCGACGAGTGAC 32836 30 100.0 36 .............................. CACCACTACGGAGCGTCACTAATGCCAGTCACGACC 32902 30 100.0 35 .............................. GCAGGAAGTCTCGTGCTGTCGAATCTCCATCGCCG 32967 30 100.0 35 .............................. ACGGAGATGTCCCGCTGGGTCTTCGAGACCTTGAA 33032 30 100.0 35 .............................. GTGTCGCCTCGTTGAGCGGTCACGGCGACGCCGTG 33097 30 100.0 38 .............................. TTCCGGAAGCCCGACGGCTCTCTCACGAGCGAGTACGT 33165 30 100.0 36 .............................. CTTTGGTTAAGTCCAGTAGGTTCATAACCAAAGGTT 33231 30 100.0 37 .............................. ATCGTCTCAGACCTTGTCGATGCCTTTCCTGACGCCT 33298 30 100.0 37 .............................. GAGCGCCGCCGCGACGTCCACATCCCCGAGTTGCTCT 33365 30 100.0 35 .............................. CCCACGCGGAGCAGAGCTTATAAACCAAGAGAGAC 33430 30 100.0 36 .............................. GACCGCGACGACTCCAGCGAGTGGGAAAGCCACCTG 33496 30 100.0 35 .............................. TCGCAAAACGCGAGTGGGAGCCGGGATGCATCAAC 33561 30 100.0 33 .............................. AAACACTTTTCGTTTAGTGTGACTTTTCATCAA 33624 30 100.0 34 .............................. TGAGTCGAACAAGGGTTGTCTGCGTTGCCGTCGA 33688 30 100.0 35 .............................. ATCTCACGGAGGCGGTCGGCGTCGGTTAAAACACG 33753 30 100.0 36 .............................. TGACGGTAGTGCCGATGCGTTTGCGTCTGTACTAGC 33819 30 100.0 34 .............................. GCGGCCAACGCGATGGCCTCGAACGCGTCGACGC 33883 30 100.0 33 .............................. CGAGGTGACTCATGGGCACCCGGAGCCTGAGAG 33946 30 100.0 35 .............................. GACGCGGCGGACCGCAAGGTCGTGCTTAATTCGGG 34011 30 100.0 36 .............................. CTCGGCACCTACTCCATTGAGGCGATGAAAAGCGGT 34077 30 100.0 38 .............................. AGGAGATGGGGGATGCCTCCCCCTCGCTCGAAGCGTTT 34145 30 100.0 36 .............................. GCGGGGCCGAACGCCTCCGTACTCGGCGGCGAGTTC 34211 30 100.0 35 .............................. TGCATGAGCAAACGTGATCTCAAGAGTGGCCAGTG 34276 30 100.0 37 .............................. ATCACCTCTATCCAGACGGCCCAAGGCCGGTTGATGC 34343 30 100.0 36 .............................. AACGAGCCGTCTACGGGTGACATTTCGAACGTCAAT 34409 30 100.0 37 .............................. TTCCATCACCACCGACGCCGCCTGCACCCCCGAGCGA 34476 30 100.0 36 .............................. AGTTGAGGAGAGACACAATGCAGAACGAAATCGAAA 34542 30 100.0 35 .............................. GCGGAGTAGTCGAACTCGGCGCGGTCGTGTCCGCA 34607 30 100.0 37 .............................. AATGATCACGTCCATGATCCCCCACAGCGAAGCCGCG 34674 30 100.0 37 .............................. CTATCGTGCAAGAGCTATTCGACGGCGTCACGTCCGT 34741 30 100.0 36 .............................. ATCGTGCTCCCTCCGAATCCGAGTTCGAGGGCCTCG 34807 30 96.7 37 ........T..................... CGCTCGAAAGCCACCGAGAAGCTCGAAACATCGACGG 34874 30 100.0 35 .............................. AACTTCAACGTCAATCCGATGGTCGAACGGCGAGT 34939 30 100.0 35 .............................. TCGGCCTCCCCGTCGGTCTCGATCTCGAGCGTCTT 35004 30 100.0 35 .............................. ATCAACGAGGCTCACGACTTTTGGGTTAAAATCGG 35069 30 100.0 38 .............................. CAGTGCCGCATTTGTCAAGCGGATTGTATTAATCACCA 35137 30 100.0 35 .............................. GACCCCGACGATGACTGACGGTCGACAACCTGCTC 35202 30 100.0 37 .............................. TGCCTACGTCGGAGGCGGCGACGTGGGCGAGGTCGTC 35269 30 100.0 37 .............................. ATTCGAACAGATCTCACAACGGGCTGGTTCATAGAGG 35336 30 100.0 36 .............................. CCGCACGAGATTCGGGTGGTCAAGGTCACGCACGAG 35402 30 100.0 35 .............................. AAATGAACGACACCGACGACAAGCGACACAACGTG 35467 30 100.0 35 .............................. CGGACGTGTGAAGCCTGTGGCGACGTTTATGCGGC 35532 30 96.7 0 ....................A......... | ========== ====== ====== ====== ============================== ====================================== ================== 49 30 99.9 36 CTTCCAGCCGGACCGTAGACGGGTTGAAGC # Left flank : CGAGAACTCACGCACGCCCTCGAGACTTGCCAAGGAGAGGTTCTCGCACGCCGAAGTCTCATCGATAGCGGATACGAAACCCGCGACGTCATCGTCGCACACACCCCGGTCGAGCGCAGAGCAACCAAGCGCCTCACAGAACTCCTCAGTGAGAATTCTCACGAACAAGCAGCGGGATTCGAACTACTGAATCACCTCAGTGGTCTCCGTGTCTCCGTCCCTCTCAAGAGCCTCGAAGGAGTGACCACGATCACCCGAATCGACGGCCGACCACTCAATGACCCCGAAGGCGTTAACGTCCTTACCACCACCCAAACCGGAAACGGCCAATTCTATGACCTCGCCGACGGTGGTCTCAGAATCACCGATCTCATCAGCGACCGCTTCTCCATCTAATCAGTTCTGTCGACCCCCCGGGGGTTGACCCAGAATTGGGGGTCGACAGAAACACTTGAGTGAATCCGAAAAGAAGAGCCGCTCACGCCCATAGATCGGGCATA # Right flank : CTCAGACACACCTGCTATCAGACTAAGAACGTCGGAAACGTGGTTTTTGGTCATTTCTCAGACTGGTCGGCCAATAGGGCGACTACAGCCCTTGTACTGCTGGTTAAACGTTGGAAATGAGGGTTTGTCATTATTACCTCCCCGTGAGGACGTGACAGACATGGACGACGAGAGTGGGGACGCCGCCGCAGAGATTTTCGGCAAGCCGGACCCAATATTCGAGCAGAAATCCCTCGTCGACGTCGACCACGTCCCACAACCCAAACGTATCGTCGGTCGCGACGACGAGATTCGCGCGCTCTCGATGCAACTCCGGTCAGCTATCGACGGCGGGTCACCAGAGAACGTGGTCATCTACGGCGAGACTGGGACGGGCAAGAGCCTCGTCGCGAAGCACGTCTCGAAGGTGGCCGAGAGCATGGCCGAAGACGGCCGGATCGGAACGGCGTATATCGACTGTAGCGACGACGACACAGAGACGCAGGCAGTGTCCCACATCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCCAGCCGGACCGTAGACGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.40,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA //