Array 1 4453-6705 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJS01000108.1 Gallibacterium genomosp. 3 strain F298 contig000104, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 4453 28 100.0 33 ............................ AAGAACAGCAAGCCATTCGGCAGATGGAAGAAT 4514 28 100.0 32 ............................ ATATCAAAAAAACGTTTGCAGAAACATTAAAT 4574 28 100.0 32 ............................ ATAAGACGACACTTTAAATGACGACAAGTGAA 4634 28 100.0 32 ............................ TGCTAGAACGTTTGAGCGTCATAGGGCCATAT 4694 28 100.0 32 ............................ ACCCAAGCCATAGTTAAGGCGTGGTTAGGATT 4754 28 100.0 33 ............................ CATTCCCGTCAGTTTTTGTTGTCTGAACCTCAA 4815 28 100.0 32 ............................ GTTACGTTGGTGTTACAGTTATTGGCAAGAAA 4875 28 100.0 32 ............................ AACAAGGGCAATTAATTGAAACAGGTTATAAA 4935 28 100.0 32 ............................ ACAGTAACGCGGCGAAATTACCTATATATATA 4995 28 100.0 32 ............................ ACTAGAACTAGAACCGCTTGAATTAGAACCAG 5055 28 100.0 32 ............................ ATAACGATTATGTGGATCGGATTTTTCAATGT 5115 28 100.0 32 ............................ GTGCGTAAGTTTCCAGAAGCAGAGATAGGGGT 5175 28 100.0 32 ............................ TCGTGCATATTGTGAAACTGCTTACCTATCTT 5235 28 100.0 32 ............................ TGTGCGGGCGGGCGTTTGGACTGCACCCCTCG 5295 28 100.0 32 ............................ AAAACGCTGGTGATGGCTGGTCAGCAAAAAGT 5355 28 100.0 32 ............................ AATTTGAGCCTAATTCTTTTGTAAGACCGTCC 5415 28 100.0 32 ............................ ATAAATTAACTGATTGTTTATATCGACAATCT 5475 28 100.0 32 ............................ TCATAGGAATTGCGGATAAGCGGGCGTATCAG 5535 28 100.0 32 ............................ TCGTCATTATTTTAAAGGCAATGGTCGGTTAT 5595 28 100.0 32 ............................ TCTGGTCGTATTAATAATTCTTTGAGTGGTTC 5655 28 100.0 32 ............................ ATGTTCACTAAAAGCGCGACAATGTATATCTA 5715 28 100.0 32 ............................ TTTCAAATCACTTAATATTACGTATTTAGCAC 5775 28 100.0 32 ............................ TATGAGGATAAGCGGGTGTATTAGCAGATGAC 5835 28 100.0 33 ............................ AAAAAATTGTTTCTTTGAGCTTGCTCAAAGATG 5896 28 100.0 32 ............................ TACAAGGTTAAATATCGTAAAGGGTTTTGTAG 5956 28 100.0 32 ............................ AACAGCGGGAACAACACCACCGAAAGTATCAA 6016 28 100.0 32 ............................ AAGTTGTATTATCAATGTGTTTAGTTGGCATA 6076 28 100.0 32 ............................ TCTAGAATACTCAACAAGCCTTACACCTTTAT 6136 28 100.0 32 ............................ TAGCAGGAGCATTACAAGGCATAAAATTACAG 6196 28 100.0 32 ............................ ATTGATTACGATAAAAGGAACGTAGATAAAAC 6256 28 100.0 32 ............................ AAGATGAATACCACCGAACTCCGATCGAAGAA 6316 28 100.0 32 ............................ TATGAGTCTATTCCGAGTTATTACGGTTCGTT 6376 28 100.0 32 ............................ TGCTTGGTTAAACCGTAATTTAGGAAAATACC 6436 28 100.0 32 ............................ ATAATGACACCAAGATGAATACCACCGAACTC 6496 28 100.0 32 ............................ AACTCCAAAGCGTTCAGCAAGGAATTTTTGAT 6556 28 100.0 32 ............................ TCCAAATTGATGGACTCACAGTAACCAGCTTG 6616 28 96.4 34 ..................G......... ACGCGATACGCAAGATTATTTATGCTGCGTTTTT 6678 28 82.1 0 ....................GAA.A.T. | ========== ====== ====== ====== ============================ ================================== ================== 38 28 99.4 32 CTTTACTGCCGCATAGGCAGCTTAGAAA # Left flank : GTATCGTTGGTGCAGTATTAACAGGTGTATTTGTATCAACTGATATTACCGGTGGTGACGCAAGTGTACTCGCTCAAATCGAAAGTGTTGTGATCACCTTAATTTACAGCAGTGTTGTTTCTTGCTTGATTCTTTGGGTAATGAGTTTATTTATGGATATCCGAGTATCTGCTGATGAAGAACGCCAAGGCTTAGACTTAATCTCTCATGGCGAACGTTTAGAATAGTTTTTAATAAGCATAGTAGTTGTTATATTGACAATGTTTCTGCACCGTAAAGGTTGAATTTCAACTGATGAAGGTGCAGTTTTTTATTTTTATCTTTTCAGTTTACTAGTCTCCAACACACAGCCCTTTTCCTTATATTCATACCCTTATTTTTTAGTATCAAATAACCAATTGATTTATAAGTAATTATATTTACCTTATAAAAAAGGGTTTATTTTTAAATTTGTAGTATAATCCCTTGTGGTTCTTGAAGTTATCTTAACTTCTATCCTA # Right flank : AAGCAAAAAATTACCCTATAACGTAAAACATTATAGGGTAATTATAACTAGATAAATCAACTCAACTAAAATTAGTTCCAAACTGATTTCATTACTGTTTTATAAGATTCGTTAAGGTGATTAATTAATACTTCAAACATAGCGTAAACTAAATCACCATTAATTTTATCCCCTTCTGTTAATAAGCAAGTATCTAAAACAATTGCATTATCATTATCTAGATAATATTTGAATGATTTATACTGTTTATTAAAATCATTTAATAATGCTTGCACTTTTTGTACTGCTTCTTCTGATTCTACTTTTGGTGCAACTAATACACGAATCATTGCATAAATAGAATCATCTAAAATAACGATGGTAGGTAATTGGTTGCCGCCAATATCAAGATGAGAACGAAATACTACTGTATTTAACGCATCATCAGCAATTTCTTCAACAACAAAAGCATCTACTTTCGCATTATCTAAATAGCTTTTAAAGCTTTCGGCTTTTTTATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched CTTTACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4451-7851 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJS01000012.1 Gallibacterium genomosp. 3 strain F298 contig000011, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 4451 28 100.0 32 ............................ ATTGATAATAAAATCGCTTTCATTTTCTGTAC 4511 28 100.0 32 ............................ ATATCAGCAAGGATACTTTGTTATTATATCGT 4571 28 100.0 33 ............................ AAAAACCAAAAAACACCTGGACATCTTGGTCAT 4632 28 100.0 32 ............................ TATTTGTAATTCGCCTGTATTTTTATCACGTT 4692 28 100.0 33 ............................ TTGACCAACCCACGCCTTCGGGTAAGTTTTCAC 4753 28 100.0 32 ............................ GCTTCGCTTCAACAGGTTTACCCACACTTTGA 4813 28 100.0 33 ............................ CGTTCGGATTGCCGATATTTAACCGATGAACAA 4874 28 100.0 32 ............................ TGAAAACCACCGCGCCAACGGTGGTTTTTCTT 4934 28 100.0 32 ............................ CACGAAAGTTAAAGTTACGATACAGCTACCAA 4994 28 100.0 32 ............................ TATTTCATTTGCGGTTTTTGGACAAACGCAGT 5054 28 100.0 33 ............................ CTCTTGCAATTGATTAAGACGAGTAAAATCGTC 5115 28 100.0 32 ............................ TTGAGCGTTGATACAGATGAAGAGTAAGGGGA 5175 28 100.0 34 ............................ CCTGTCCAACTGGTACTGTTGGTGCTCTTTTAGA 5237 28 100.0 32 ............................ TTCAATTTCCCACGTTGTTGTATAAGCTCCGT 5297 28 100.0 33 ............................ CTATTAAACGGATACAGCACTTACAAGGATCTA 5358 28 100.0 32 ............................ TTACCGAACCAAAAAGAAGCCTATGAAGCCAA 5418 28 100.0 32 ............................ TCAACACACAATAAAGTCGCATAACTGTAATA 5478 28 100.0 33 ............................ CCGTCAATTTTAATTCTGCTATTGCGTAACTAA 5539 28 100.0 32 ............................ TTGAGTATTTAATCGCTTGTACGCTTCAATTA 5599 28 100.0 32 ............................ ATCAAAAGTCAACGCTTCCCCGTCTTTATTAA 5659 28 100.0 32 ............................ TGACAAAAATGATGCACATATTATTTTCTTAC 5719 28 100.0 32 ............................ AACTGCGAAAATTGATCAGCGTTCTGGTACGA 5779 28 100.0 32 ............................ ATCATCCGCCACGACTACTGGCATAGTTAATC 5839 28 100.0 32 ............................ AATAACTGTAACACCAACGCAATGGGCAAGAT 5899 28 100.0 32 ............................ TTCAACCTCAATAAATATTTCTTCTCCACTAT 5959 28 100.0 33 ............................ TGTTGCTTATGCTAATCATGGTGAATTGATATT 6020 28 100.0 32 ............................ AAAAACTCGCAATGAAACAAATTGATCCTTTC 6080 28 100.0 32 ............................ TTTTAGATTAATTAACGAGCAAGTAAAACACA 6140 28 100.0 34 ............................ CTTACAGAGCTTAACGATTGGGTATCTGAAACAT 6202 28 100.0 32 ............................ TTTGCAATGCTCACTTTTAAACACGATCATGT 6262 28 100.0 32 ............................ TTTACGACTAAAAACGATTTGATAGGTTTTTT 6322 28 100.0 33 ............................ GGTGCAACCAACCCAAATAGGCGTAATGAGCCT 6383 28 100.0 32 ............................ AAATTGTGGTTGCCTTTCTGCAAAAATGATAA 6443 28 100.0 32 ............................ GATGCCGTGACGATGGCTGGACAAAAAAAAGT 6503 28 100.0 32 ............................ ATATGAAGAAGTTACTAAGAGCCAACGTTTCG 6563 28 100.0 32 ............................ TTGATGCGTATGACGCATTTGCAAAACTAGAT 6623 28 100.0 32 ............................ GATGCAGTGGCGATGGCTAGACAAAAAAAAGT 6683 28 100.0 32 ............................ TGTACCTATCGAGTATTATGCAGCCCATACTG 6743 28 100.0 32 ............................ TTGATGCGTATGACGCATTTGCAAAACTAGAT 6803 28 100.0 32 ............................ AAGATGTCCAGGCGTTTTTGGGCAGTTGGGGG 6863 28 100.0 32 ............................ GTACTACTAAATCATGGTATTAACCAAAAAAC 6923 28 100.0 32 ............................ AACACCCCAAAAGTTAAAATTACGATATAAAC 6983 28 100.0 32 ............................ TAGCTGATAATGCAGTAGCTATTATCACAAAA 7043 28 100.0 32 ............................ TTTGCTAACTTGGTTAGTTGGATAGCTGCGTT 7103 28 100.0 32 ............................ TCTAACGCAGTAACACGCAAAAACAAAAAAAA 7163 28 100.0 32 ............................ ATTGCATTAGCAGGTTTTTCTTCATCCTCTTT 7223 28 100.0 32 ............................ AGTGCTTGGAACAGGACTAATATTAATGTAAT 7283 28 100.0 32 ............................ ATTGATTGCGATAAAAGGAACGTAGATAAAAC 7343 28 100.0 32 ............................ AAAGTAAACATACCGCTTACGTTATAGAAAAA 7403 28 100.0 32 ............................ TCTGCCCAACGCATAGCGTAATCCGCTGAAAT 7463 28 100.0 32 ............................ AGTAGGAATGAAAGCCGCAATGGAGGTTACAT 7523 28 100.0 32 ............................ GTGTTGAAAATGCCTTAGCAAAATTCGGTTGT 7583 28 100.0 32 ............................ AAAACACATTAGAAAGCCGTAAAAATAACAAA 7643 28 100.0 33 ............................ GCAACAGCCGCCAAACTACTTGCGCGTGCAAAA 7704 28 100.0 32 ............................ TCAACGTGCAATGCGGCGTGGATTGCAGAGAT 7764 28 100.0 32 ............................ TGTTGCTCCGTGCCGATTAAGTCTTAATAACA 7824 28 92.9 0 .........................CG. | ========== ====== ====== ====== ============================ ================================== ================== 57 28 99.9 32 CTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TATTGCATTACAGTTAGATCCATTACAAGATTATTTTATAATCAATGCAATTACTCCTGTTCCTGAAAAAACAACTGCTGTTCGTTACCAAAGAATCCAACATAAGGGTAATAGTGCATTAAAACGAGCTGAAAAGCGGATGAAAGAAAAAGGTAATTTTTCTGATGCAGTTTTAGAAAATATGCGTCTAAAACAACAGCAGGTAAAAAGATACCCTCATGTATTTTTGAAAAGCGCGAGTACTAAGCAAACTAAGATGTTACTGGAAATAAAACGTGTAGTTTGTAGTGAACATCGAGAAGGGTTATTTACCGGTTATGGGTTAAGTAAAGATGCAATTGCAACTACACCACATTTTTAATATAGAAAACCCTTTTTTTTGAGCAAAAATATATATGTTAAAAATCAAACACTTATATAAGACCTCAAAAAAAGGGTATTTTTGATTAAAATGCTCTTTAACAGTTTATTTATCTTATTTGTAAGGGCTTTGATCTCTA # Right flank : ATTAAAGGCGAAAGAAAATGGGCTTTGCTACCGTAAGGCAGCTTAAACCTAAAATTATTTGTATCTATCTATTCTTATTTAAAAAAGCTTTAAAGCTGTTTTAAACTCTATTTAAATTAGTCAGCTATGATTTTTCTATATCTAACCGATATAAAAAATCTATTGCTCATTTTCTTTCTGCCAAAATCCTAAAAATTCATTAAATTGCCAAATTGCTTCTGTTTGTGAATCTTTAGTTAAAGAGACTGTTGCATATGAAACTGCAACTTGCTCAAGTTCTTTATTTTTTAACTCTTCCGCCAATTCATCCAATACTGTTGCGAGTGAAAAATTAAGCCATGGCTTAATTTGTGAATTTGTCAATTCAAGTGGGCGATAATCAAAACGATGATATTCTTTTGCACAAGAATAAGGATCTTGAGATGCTTTCTCATAATAGGCAAAAGCATAATGCCACTCACTTAACTCATCAGGTAAACAGACAAACTCCTCCATTGGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 15356-13951 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJS01000047.1 Gallibacterium genomosp. 3 strain F298 contig000045, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 15355 37 100.0 35 ..................................... CTCTACTGCTTTAATCGTTTCTTCATAATCTGGAA 15283 37 100.0 32 ..................................... TAAACGTGAGAAGATCTCTTACTTCTTCACGA 15214 37 100.0 34 ..................................... TGTTAGTTTCTTTAATTCTTCAATAGTCGCAATT 15143 37 100.0 36 ..................................... GTGGATAATATTTCAGACGTACCGTTGTTGGTTTCA 15070 37 100.0 35 ..................................... GTCATGAATCGATCCTGTACCATCGGTTTTCTTTC 14998 37 100.0 37 ..................................... TTAATCGCTTATATTCTTTTACTAAGCGATCTTCATT 14924 37 100.0 32 ..................................... ACTGCATTGTCTTTCTGTGTATCGTGCAAGCC 14855 37 100.0 34 ..................................... AGAAAATAAGTTGCTTTTATACATAAGTTTTTGT 14784 37 100.0 36 ..................................... ATTTCTTCTGGCTAAATGTTTCCGTCATTGAATTAT 14711 37 100.0 35 ..................................... AAATAGGTCTTGGATTCAAGCTAGACGATAACGGT 14639 37 100.0 37 ..................................... TTTCAGTCATTGAATTATGTTTATCTAGTAATGCGGA 14565 37 100.0 35 ..................................... GCTAATTCGCCCTTATCACCTTGAATCCAGATGAA 14493 37 100.0 37 ..................................... TTTTTCTTTCATTTTTGCAATCCCCTAGTAATCGGTG 14419 37 100.0 35 ..................................... ATACTTGCCATTTTCTTCATACACAGTCATAAATC 14347 37 100.0 36 ..................................... GTTTAACGCTTTGTAATTTCGCCCGCACCCACAACA 14274 37 100.0 36 ..................................... TTTCTTCTTCTGGTTGGTGTTGGTGGCGCTTTTTCA 14201 37 100.0 33 ..................................... ATGTTGAAATCATAATTTTCTCCTTAATAATTA 14131 37 100.0 34 ..................................... TCTTTAATTGATTTCATTTCAGATATTTTCATGA 14060 37 94.6 36 ......................A...........A.. ATCCATTGACATTTTTCAATGGTCTATTTAAATTCG 13987 37 70.3 0 ...A...A.....ATTT.A..CA...A.......A.. | ========== ====== ====== ====== ===================================== ===================================== ================== 20 37 98.2 35 GTCGAAAGACATCGCCCTGTATGAAAGGGATTAAGAC # Left flank : CATTTTGAATGGACTTATTAAAAGGAATATATTATGCAATATTTGATTGGCTACGACATTTCAGATAAAAAACGCTTACAACGTATTTATAAAAAAATGGTGGAATATGCTACCCCAATACAATACAGTATTTTTTTATTTGAAGGGGATCAGAATGAGTTAAATGTTTGTATAAATAAAATTCTAGAAATTTTTAATCAAAAAGAAGATGATTTAAGGATCTATCCATTACCCCAATATGGTAAACAATGGCTGTTTGGTAAAAGTATACTGCCCGAAGGGATTATTTGGACTGCATTACCACAATCCTTTAGTTATCCGATAAACTAATTGATCTTTATCAGGTGTTCTTTAAAATTACTGTAATTCTTATATTTAATAAGAAACATTCTTTTTGAACATTTTTTATACGAATCAAAACTTAACTATGGTAGTTGCAAATTTTTTTGGAAATACTTTTTATAATTTATTGATCTCAAAAGAAAATAATCATTAATGGA # Right flank : CGTTCATTAAGGATCACCAATCAAAGTTAAACGATATCAATTACCAGAATTATAGGAAAGGGATTTCATGAGAGAGAAAAATATTTTACAATTAATCCAATTTTGAAAATTGTAGGTGTAGGATATGTTAATAATATTAGCTTCAAGTTTTGCTATATCCATATTATGGATTGTTAGTTTTATAGTAACTCTGCGTTTCTTCGACTTTCTAATTCCACAGAGATACGAAAACTTGAAATCAAAAGTTATTTTTGTAGTAATGTTTATAATAATTATCACTTCAGCTGATTATGCTTTTTCATTTCTCCAATAAAAATATTTTTAATAAAAACAATATTTTATCTAACTAAACCTTATCCTATTACAGTAAAGTTTTTCTCAGAGGGTGATTAAATTTCATCCTCTTTTTCGTCATAAAAGATAAATTTTCAATTCAGTTAAAAACATTGCCTTTTAAAGGGATTAAATCGTCTTTTCTTCTTGAATCAACTCTTCCCAAA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACATCGCCCTGTATGAAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [68.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 1 44346-45846 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJS01000024.1 Gallibacterium genomosp. 3 strain F298 contig000023, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 44346 32 100.0 34 ................................ TGGATGACCATAAATGCTATTGGCGATATTAGCG 44412 32 100.0 34 ................................ AAGAAGCACTAAAAGGCATTGAAAGACTATTGTA 44478 32 100.0 35 ................................ TATTAAAAGCTATTTATCTGGGTGATCGTATTTAG 44545 32 100.0 34 ................................ AACAGTTAAAACTCGAATCAAACACCTTTTTTAA 44611 32 100.0 36 ................................ TCAAAGTGGTGATTTTATAGGGGGTGAAAATGGAGA 44679 32 100.0 35 ................................ TGCTTGAAACGCATTCTTCCAACACTCTGCGAAAG 44746 32 100.0 35 ................................ TGCTTTCTTAGCATTATTCACAACGAATCGGTGGA 44813 32 100.0 35 ................................ GATTCCATCTACTTTGCCTGTATGCCCGATACCTA 44880 32 100.0 35 ................................ TCAAGAACAATATGCAGAATTAGAAAAATTGGAGA 44947 32 100.0 35 ................................ GGCTTGATCGCACTCAAGCATTAATCCGTTACGTT 45014 32 100.0 34 ................................ CTTTTATTGTAATACAATTAAAGGAAAATCCCCC 45080 32 100.0 35 ................................ CTTAAAAAGGGTAGTAATTAATCTACTTTAGAGCA 45147 32 100.0 36 ................................ TTTACCGACTAAATCAGCTCCGACTAAAAAGACTAA 45215 32 100.0 35 ................................ ATTTTATCAAATGCCGCTTTTGCTCCAGTAATTGC 45282 32 100.0 34 ................................ CATATAAATGTATATGATGTTTTAAATGATGTTG 45348 32 100.0 34 ................................ TCAATAATTCGCTTATATTGCAGTCTTTGCAGCT 45414 32 100.0 36 ................................ TCTGCTTCGGTGAGGGACGGCGGTGTACGTCATAAG 45482 32 100.0 34 ................................ TTGGAAAATAAACGGTTTGATTACATTGTTGGTA 45548 32 100.0 35 ................................ TCATCTGCGCGTCTGGTACGGGCTACAAAATTATA 45615 32 100.0 35 ................................ ATGTTTAATATAGACGGATGGATAGATTAAATTAG 45682 32 100.0 35 ................................ ATGACTTTGCGCTTATTACCTTTATCAATTGCATT 45749 32 84.4 34 .....C..C..T....G....A.......... AATTATTATTGATCCGGCTGACGGTAAGAGAGTG 45815 32 87.5 0 .....C..C.......G....A.......... | ========== ====== ====== ====== ================================ ==================================== ================== 23 32 98.8 35 GCAGCTACGTTCGCGTAGCTGTGTGTTGAAAC # Left flank : ATCGTTTTATGCATATTCCAGAATTAATTCGGATGGGAGCAAAAGCCGAAATTGAAGGTAATACTGCAATTTGTCATGGCGTGGATCATCTTAGTGGTGCTGAAGTAATGGCAACAGATCTCCGCGCTTCTGCTAGTTTAGTCATTGCGGGGTGTATTGCACAAGGTGAAACTATTGTTGACCGCATTTATCACATTGATCGTGGTTATGAACATATTGAGGAAAAGTTACGTGGATTAGGTGCTCGTATCGAGCGTTTTTCTGATGCGGAAACTGCATAGATATATTCGTTATTAATTTAATTTGTCGAATCGCTAACCTCTTGTTCTCATAAAAAAAGCAATAGGTTAGCGATTTTTTTCAGGTATTGTAATACTTGAATTAAACAAAATAAGTGTAACAAGAAAAGTAGGTTATACTTATGTTTGATCCCTATTTTGGATAAGTTAGCGAATGAAGTATTGTATAGACTTGATTTGCAAGCTTTAGTGAAGTAGGGA # Right flank : CTTCACAGTCATAGGTAATTTTCTTCACACTTTTTGCAGCTATTTCATGTAGCCAAATGCCAAACAATAAAAAATCTGCACTTTAATGTAGTAATAATTAAAGTGCAGATCATTTAAAAAAGTTTGGTTTAGTTAAACAACTTAATTTTTTTGTTGTTTTTGATAAGCGTAAGCTGCTTTAATAAATCCTTCAAATAATGGATGTCCATCACGAGGTGTTGAAGTAAATTCTGGATGGAATTGGCAAGCGACAAACCAAGGATGATTTGGCACTTCAATAATCTCAACTAGTTTCTTATCAGCTGACCAACCAGTAACTTTTAAGCCCGCTTTTTCGATTTGTGGAAGTAACTTATTGTTTACTTCATAGCGATGACGATGACGTTCTTCAATGGTTTCTTTACCATATAATTGGCGAGCTAGGCTACCTTCCACAAGATGGCATTGTTGAGCACCAAGACGCATTGTACCGCCAAGATCAGATTTATCACTGCGTACTT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCTACGTTCGCGTAGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCTACCTTCGCGTAGCTGTGAGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.70,-1.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2524-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJS01000053.1 Gallibacterium genomosp. 3 strain F298 contig000050, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2523 28 100.0 32 ............................ TTGATCTCACGTGAATTACACGAGGAAACAGG 2463 28 100.0 32 ............................ TACAAGGATCTATTTTAAAAGGGTTATTAGTT 2403 28 100.0 33 ............................ GCTGATCCCCCGTGCGGGGGGTCTTAACTAGTA 2342 28 100.0 33 ............................ ACCGAAAGTATCAATCAAATCTCTTGCAAGATT 2281 28 100.0 32 ............................ CTACGAATCCAACTGAAAGCATTAATTCTTCT 2221 28 100.0 32 ............................ TTGCTAATGTGCATTGTCGCAAAAGTATGCCT 2161 28 100.0 32 ............................ AATCAGCAGGCGGTGCAAAAAGCAGATGTAGG 2101 28 100.0 32 ............................ TACCAAAGTAATCAACACAAAATAAATCTATT 2041 28 100.0 31 ............................ TAAAGTCTGCATTTTGTGCCTTAATCGTTGC 1982 28 100.0 32 ............................ TAGCACCGCATCGTACTCTCCTGTTTCCTCGT 1922 28 100.0 32 ............................ TTAATCGTTGCAACGCCAGCAGAAAAATCAAC 1862 28 100.0 32 ............................ CTTTGCCACCTTGTGCGGGCGGGCGTTTGGAC 1802 28 100.0 32 ............................ GTTGTGCAGTTCGCTGGCAACAGAAAAAACGA 1742 28 100.0 32 ............................ TCGCAAGCTCGCCCCATTTGCTAACTTGGTGA 1682 28 100.0 32 ............................ ATTATCGGGTGGTCCGCAAGCGGCTTATGGGT 1622 28 100.0 32 ............................ GCAATGCCTCCGCCAATTAATGCACCCAATGT 1562 28 100.0 32 ............................ ATTTGCTTTAATGTCAAGTTCAGCCTTTGCCG 1502 28 100.0 32 ............................ TATTTCATTTACGGTTTTTGGACAAACGCAGT 1442 28 100.0 32 ............................ ATTGTGCAGTTCGCTGGCAACAGAAAAAACGA 1382 28 100.0 33 ............................ AAACGCTAAAAAAACAGCGGCCATTCCAGCCAT 1321 28 100.0 32 ............................ ACGATAACGTGGCGAAATTACCTATATATATA 1261 28 100.0 33 ............................ ATTTCAGCCATTTACCATTTTTCCCTTTAAAAT 1200 28 100.0 32 ............................ GAGGTAGATTTTGAGCGTCATTACTACACCTC 1140 28 100.0 32 ............................ TCGCAGGCTCGCTAGCCTCTTGTTCACTCTGG 1080 28 100.0 32 ............................ AACGAAAGAAGAAATAATTGCCAGAGCTGAAG 1020 28 100.0 32 ............................ TTTTGGCTTGTTTTGTTGTTTAAATTATCAAG 960 28 100.0 32 ............................ AAAGGGGGCTATAAAATGAAAAATTATAGAGA 900 28 100.0 32 ............................ AAACTACCCCAAAAATTGCAGCCATTTTGGAC 840 28 100.0 32 ............................ GATCCCCCTTACGGGGGGTCTTAACTAGTAAC 780 28 100.0 32 ............................ ATTATCAAGCTGGAATGCAAAATTTGAAAGAC 720 28 100.0 32 ............................ TCAATCGCTTCTTCAACCGCAGCAACGGGATC 660 28 100.0 32 ............................ AATGCCGTTGCAATTTCTTCATTGCTTTTTGT 600 28 100.0 32 ............................ ATGCAGCTACGCTCCATTCTGCTGATTCATCG 540 28 100.0 32 ............................ AACCCCACAAGGAATAGGGAACAAGTATTTTT 480 28 100.0 32 ............................ GTACGTAGTTTTAGTCGGTTGGGCGAATACTT 420 28 100.0 32 ............................ TTCGGTTGAACCAGATAGAATAGGCATAAACT 360 28 100.0 32 ............................ ACCTTGTTCAAGTTCGTGTATAGGCGACAAAA 300 28 100.0 32 ............................ TTGTGGCACAAGGCTGGCACACTTTAGTTGTA 240 28 100.0 32 ............................ ATATCAAAAAAACATTTGCAGAAACATTAAAT 180 28 100.0 32 ............................ GTATGTCGAGTTAAAAGCAAGTCCGGCTAAGT 120 28 100.0 32 ............................ TCCCAAAACAATTACATCACCATCATTTACAG 60 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 42 28 100.0 32 GTTTACTGCCGCATAGGCAGCTTAGAAA # Left flank : TTGTCACTTCAAAAAGCGGTGAATTAGAAGATAAAGATGCCATTATTGAACGTATTAAAGAAGCAACTCAATATGTTGATATCAACCAACTTTGCTTAAGTCCACAGTGTGGTTTCGCTTCTACTGAAGAAGGAAATGTATTAACTGAAGAACAACAATGGAAAAAACTCGAATTCATTCGTGAAATTAGCGAAGAAGTTTGGGGCAAATAATTAATTTTGAGCCATTTATCCATAATAGCCACATCTAAAAAATGTGGCTATTTTTATTTAGTAGCCAATCACAATCTTTACAACTCATTTTGATTACCTTCACCTCAGTAAATAGCCTAATTTTTAAATTGTTCCCCCAATTCTATCAGCTCTAAAAACCCTTATTTTTTTGGATAATTTAACTATTTGATTTATAAGTAATTATATTTCCCTTATAAAAAAGGGTTTATCTTTAGATTTGTAGTATAATCCCTTGTGGTTCTTGAAGTTATCTTAACTTCTGTTCTA # Right flank : AACGCTAGAGGAAGAACTTATGAAAATATAGAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTTACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 8409-11246 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJS01000066.1 Gallibacterium genomosp. 3 strain F298 contig000063, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 8409 33 100.0 34 ................................. GTTGGTGTCGCCCAATAATCCTTATCTTTTAGTT 8476 33 100.0 34 ................................. ACCGACAAGGAGCAACACAATGAACGACTATAAG 8543 33 97.0 36 ................................A CAGCGTAGCGTCCCTTGACAAAGCCTTGAGCCGTAA 8612 33 100.0 33 ................................. TCTAATTCCTTATGATCCCATAATTTACCTTTA 8678 33 97.0 33 ................................C CTTAGGTTGTTCAAAAAAATGATTACAAAGGGA 8744 33 97.0 33 ................................C AACGAATCGCCATACTGCAGCGATTAAAGCAAG 8810 33 97.0 34 A................................ CTATTAGTAAAACGCCCCGACCTAATCGCAGAAT 8877 33 97.0 33 ................................A TCAGTTTGGCAATGGTAAAGCTCACGCCGACCA 8943 33 100.0 35 ................................. GCAGGTAATCGTGCAGTTGAGCAACTTATACTCGC 9011 33 97.0 33 ................................G CCTTGTATAAATTCGAGTTCTCAGGCTCGGCTT 9077 33 100.0 33 ................................. CTTAAAATTAGATCCCTATGAAGCAGACAATGA 9143 33 97.0 35 ................................A TTTTTGGCGTACATATCAAGTAAAACAATCAAACC 9211 33 100.0 33 ................................. TCCACCTTATAAACCATTTAACCCCAACTCTAT 9277 33 97.0 34 ................................A ACAGCAATTAGAAACCATCATTACCCCTATTATG 9344 33 97.0 33 ................................A TTTACAAGTTGAACTATCAGGATCTAAAACATG 9410 33 97.0 34 ................................C CATAAACGGGATTGTGCTTGTAAGTAATGCTGAT 9477 33 100.0 33 ................................. CCCTCTTTGATTTGGCGATAGATAAACGTATGG 9543 33 100.0 33 ................................. GGGACATCTGCTACAGCTAAAATAATGATATGG 9609 33 100.0 34 ................................. TCTAATTCCTTATGATCCCATAATTTACCTTTAA 9676 33 97.0 33 ................................C TGCTTGGCTTTGGTATTTAATTTAGAAAAATAC 9742 33 100.0 34 ................................. TTGGTCAATTTGGTAAAACATCGGATAAAGATGC 9809 33 100.0 33 ................................. GTTTCTATTTTTACGGGTGCTAAGACGACAAAG 9875 33 97.0 36 ................................A ATCATCAGCGTCCTGATTGGTATGTTGAGCCGACAA 9944 33 100.0 36 ................................. TATTATATCGTAAGCATTATGATATAGTGTACACAG 10013 33 97.0 35 ................................A TTGTTGGTATTAACCCCGCACTAATCTTCTTTTTT 10081 33 97.0 32 ................................A TATAGGCAAATTCGACAAGATGGATAATTTTG 10146 33 97.0 33 ................................A CGTCGTTGGATGACATTACGAGATGATGAATAT 10212 33 97.0 35 ................................A AAAATGGATTAAAAAACTTGAAGATTTAGGTGCTT 10280 33 97.0 33 ................................C TTTGGTTGTAATTATCAACACTCAAGATTTCGA 10346 33 97.0 34 ................................G CCACGAGCTTGGCAATATTGGGAAGCAGGAGATA 10413 33 97.0 36 ................................C TGTGAAATTCCGTCAATTAGAAAACGCTATCAAGCA 10482 33 100.0 34 ................................. TTAGCTGTGTAAGTGAGTTTTCGTCTTTATCTGG 10549 33 100.0 33 ................................. ACAGAGCTATCAAATCCAGCTTCAAGATATTTC 10615 33 97.0 33 ................................C TCACTAAAGCGAGTCCATTTGCTGTAAATTTGG 10681 33 100.0 33 ................................. TACGGTGGGGCGAGTGGACTTTATCAGTTGGTC 10747 33 100.0 35 ................................. TCACTTAAACCTAATACATCTGCTACTGTACCTGT 10815 33 97.0 33 ................................A TTGCGTAGAAAGTAACGCTGTTTATGCTCCATA 10881 33 97.0 34 ................................G AAGTGCGGTATAAAATCACCGCACGAGAATTTAA 10948 33 97.0 33 ................................A TTTACATTATATTTGGGATAAGGGTTATTGTTC 11014 33 97.0 34 ................................C AATTAATCCAAATGCACCACCTAGCATATTTGAA 11081 33 97.0 33 ................................C TCTATGATGTACTCAGCCGCTGATGGCGTAAGA 11147 33 100.0 34 ................................. AATATCAGAATCTAGAGCAACAAGTAAGTGATAA 11214 33 90.9 0 .............................G.GA | ========== ====== ====== ====== ================================= ==================================== ================== 43 33 98.0 34 GCAGCCACCTTCGCGTGGCTGTGTGTTGAAACT # Left flank : TAGGAGTAAAAATACTATGCTAATGTTGATCACTTATGACATTGCTATGGATGACCCATTAGGAGCTACTCGGTTACGCCATATTGCAAAACACTGTCTAGACTATGGTATACGTGTACAATATTCCGTTTTTGAATGTGATATTACGCCAGCTCAATGGGTAAAATTAAAAGCTAAGTTACTCGAAACATACAACCCCGAGACAGATAGTCTCCGTTTTTATCATTTAGGTAGTAAATGGCGACGAAAAGTAGAACATCATGGTGCAAAACCTGCAATAGATGTTTTCCAAGATATACTAATTATTTAATCGCTAACCTCCGGTTCTCATTAAACTCCTTTAAGATTAGCGAATAGAAAAAGTTCTTTAATAATCAATTAATTAATTTGAGTATAAATATAGCTAAAACTTTGTTATACTTTTTATGATCTCTATTTTAGGGACATTAGCGAATTAAAGGTTCTCAAGCCTACAGTAGCAAAGGTTCTTAAAATAGGGA # Right flank : ATATATCTCCCCTAACTCCTATTTATAAAAGAGGTAAAAATAGCTGGTCATAAAAAAATAGCTGGCTAAACAGCACAGCTATTTTGATTAACGCAATGAAATTGATTGCTCTAGTTACTTACCATGGATAATTTCAGCAACGTCTACTTTACGATTTTCATAACGAGAACGGGTACAAGCATCCGCTGTGGCAATCGCTGCACGAGCAGCTTCACCGGTAAGCAATTTTTCAAACTCTGCTGATGGTTTCATACCATGCATAATATCATTAAGGTATTTCATCTCTTTTTTCATCACAGAACTTAACCATAATGGTGTGCGTTTACCTGGGTGACCATATTGGATTGCGCCATCCATTTCTGTACCCGTATAAATACGAGTACGGTCATCATCTTCCTCTTGTGTTTCATGGATTAAGAAATGGGTTTCTTGCCCATCTACACGCAATGTACCACCACAATGATACATATCGAGCTTAATAGCACCTTTTTCGCCTTGAA # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTTCGCGTGGCTGTGTGTTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.40,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,1.01 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 1 21-408 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTJS01000085.1 Gallibacterium genomosp. 3 strain F298 contig000082, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 21 28 100.0 32 ............................ CTCAAAATAAAAAAGAGGCTCAAGGCGTAAAT 81 28 100.0 32 ............................ TGTAACAACAAAAAAACTACCTTTATCCTCAA 141 28 100.0 32 ............................ GCAAAGTCGGCGAACTCACAACCCGAAAACGA 201 28 100.0 32 ............................ ATTATCCAAATCAATTATAGTTGGATCTGCAA 261 28 100.0 32 ............................ AAAATCCGCTACCCGTTCAGCAAAATTACTTT 321 28 100.0 32 ............................ TAGCTATATCGATGTTCCATATAAAGTTGATG 381 28 96.4 0 ............G............... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.5 32 GTTTACTGCCGCATAGGCAGCTTAGAAA # Left flank : CGGAGGTTGGTATTCGCACAG # Right flank : ATGTATTATCTTGCTTAGGAAATAGCACATTTTTACTTATGGGCAAACAAAAATCCCAGCCTAAGCTGGGATTTTTACATCAAAAAATAATCAATTAATTATTTTTCAACTGTTGTTTGGTGTTGACCACTTACAGAAACTTCAACACGACGATCTGGTGCTAAGCAAGCGATTAATGCTTTACGACCTTTAACTGCATCACAAGTGTTGCCAGTTACAGGGTTTGCTTTACCATAACCAACTGCTTTAATTACATCTGGAGAAACAGATTTAGAAACTAAGTAGTTAGCAACAGTGTTAGCACGATCTTGAGAAAGTTTTAAGTTATATTTGTCAGAACCGATACGGTCTGTATAACCAGCAACTTCAACTGATGATAAGTTACCAACTTTAGAAATTTCTTGTTGTAAGTTATCTAATGATTGTGCTGCTTCTGGTTTTAAGTTTGCTTTACCGAAAGCAAATAATACATCAGAGCTTAATGCAAATTTCTTGTTAAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTTACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //