Array 1 63026-63522 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQQX01000129.1 Paenibacillus jamilae strain CN9 contig_52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 63026 32 100.0 35 ................................ CCCTCCTTGGATTTCAGCTGTCACGTACTGGCCTT 63093 32 100.0 33 ................................ AGTTTTTTGCCGCTTTGTTGGTAGGATTTTTGC 63158 32 100.0 36 ................................ AAAGCGTCTGACCGTAAATATAAATGGACACTTGAG 63226 32 100.0 34 ................................ CGAAGATAACATCGGGTACGGAGTTACCGTTTGC 63292 32 100.0 36 ................................ AAGTTCAAGAACCACCCGAACAGTCATGGGGCTATC 63360 32 100.0 36 ................................ CTCTGTAGAAGCCAGAGTAGTGAAGATACTGCTATA 63428 32 100.0 34 ................................ AGTTTTTTGGTGCTTTGTTGGTAGGGTTTTTGAA 63494 29 90.6 0 .............................--- | ========== ====== ====== ====== ================================ ==================================== ================== 8 32 98.8 35 GTCGCACTCTATATGAGTGTGTGGATTGAAAT # Left flank : ATAAGGCATTCTTGATAACCTCCTGAGTTAAGAAAATCATTCGATGTAGCTTTACACCAGCATACTACAACATATTGAAACTAACTCGCCCATTGGCGTACGAAAGCCGACAAATGGCCAAATGTTATCGGGTATCCACCGGCATGATTTATTCAAAATCCTCACCATTAAACATCACTACCTTCGCTTGCTTCACTTAGGATAACCTATAATAGGATACCAACTTATTACTGGATTTTATAAACTTATACTTATCATGCATTAAAACTTATCGCCCCTTCTGCATCCACTCGGTAAGCTTAGATTAGCAGCTATACCTGGTGCGAATGCCAAGCTCACATGATTTTCCCGAGTTATTCGCACCTCAGATTTTATCGAAATCGCGTTGAATGTGAACAACACCTGAACTTTAATCAGTGATTTTAGTATAATCTAGTTACCATATAGACTGTTGTACGCTACAATAGAGATAAAGGCTCTTGGATACGTAGTTTTTTGCT # Right flank : | # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.38%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.30,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 485-779 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQQX01000156.1 Paenibacillus jamilae strain CN9 contig_77, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 485 31 100.0 36 ............................... GTATATCTGAGGATATGGATGCACGTATAAAAAAAA 552 31 100.0 35 ............................... AACCCCTCGATCAAGATATGTTGAGCAGAGTTACA 618 31 100.0 34 ............................... CCGATACAAAACCACTACTACGAACTGCGTCCGA 683 31 100.0 35 ............................... TGGCACCAGCAGAATCAGCACAAACACCTGTTACA 749 31 93.5 0 .......................T.A..... | ========== ====== ====== ====== =============================== ==================================== ================== 5 31 98.7 35 TCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : CACTCTATATGAGTGTGTGGATTGAAATAATCCAAGGCCAGTGAGGCTATAAGTTAGCTTTACGGTCGCACTCTGTATGAATGCGTGGACCATGATGGAGTAGCCGTCACCTGGTCGTACGATTGGAGAGCGCCGTTTTATCCGAAATAAAAGATCCGATAAGAGGAAGAACGGATATTCTATGCGATTTGGAGGGTGGCCTACGGTTTAGTACACTTCCGTGTGGGATGAGGTGATCTTGTAACAAAAAGATGATTTTCAGTTCCATGGATGCCATAAATACCCGCAGTTAAACCTATTGTGGTGCGAATGTGAAGCTCACATAAAAAACCCGGGTCCTTCGCACCTCGAAATTTTTCGAAAAGAAGCTGAATCAGTTACCTTCATTTAAAATCAAGCGTTGATCCAAGCCTTTTTGGCATCAGTTTTTGCGATAATGTGTGGAATTGATATCATTAGGGTATGAATTACTACATTTTCGCTAT # Right flank : TTAGATGCTGTAACTACAAACACCTGTCCAACGAGATGGAATCAGCACTGGAAGAACTTCGAGGAGTATAGGTCGACCATCTTGTCCTTACATTGATTAATAAAAAGTTGATTCATAGTAAAGGATTTTACAAAAAGAAAATGGGTCTGTCATGAACTATATTAATGTATTTCGGGTTTGACGCCATTTCTTGAAGTTCGAAGTATGAACCCGGGGAGTTGATACCAAAAAGAAGACAGCTTGCGCTTCTACAACTTAGGAGTTGACTACAAAATGAAAGTAGAGCATATAGGGGCTAAAGAAACTTACGACTTGGAAAGCGTACTCGGTTTGTAAGGTGCGAATGTGAAGCTCACATAAAAACCTCGGGTCCTTCGCACCTCGAATTTTGTCGAAAATCAACTAGATCAGTTACTTTCAATAAAAGTCAATGGTTGACCCGAGCCTTTTTGGCATCTGTTTTTGCGATAATGTGAGGAATTGATATCATTAGAGTATGA # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1297-1718 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQQX01000156.1 Paenibacillus jamilae strain CN9 contig_77, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 1297 31 100.0 36 ............................... AAAAAATGCCTTAAACAGACTGGACACAGGATCACG 1364 31 100.0 35 ............................... TACAGATAGGTGGTAATAAATCGTGACTATGGGTG 1430 31 100.0 34 ............................... ATTTGCTAGGTAAAAGCAGATGACTGCATTTTGG 1495 31 100.0 35 ............................... ATCTATCATTTGCTTGGATGAAGCTCATACCGATG 1561 31 100.0 34 ............................... TTTTTTGTGCTGATTATGCTACATGGCGGTATCG 1626 31 100.0 34 ............................... CTTTCCGACAGAGCTTACAACCGTCTGTGAAAGG 1691 28 90.3 0 ............................--- | ========== ====== ====== ====== =============================== ==================================== ================== 7 31 98.6 35 TCGCACTCCATGTGGGTGCGTGGATTGAAAT # Left flank : AACACCTGTCCAACGAGATGGAATCAGCACTGGAAGAACTTCGAGGAGTATAGGTCGACCATCTTGTCCTTACATTGATTAATAAAAAGTTGATTCATAGTAAAGGATTTTACAAAAAGAAAATGGGTCTGTCATGAACTATATTAATGTATTTCGGGTTTGACGCCATTTCTTGAAGTTCGAAGTATGAACCCGGGGAGTTGATACCAAAAAGAAGACAGCTTGCGCTTCTACAACTTAGGAGTTGACTACAAAATGAAAGTAGAGCATATAGGGGCTAAAGAAACTTACGACTTGGAAAGCGTACTCGGTTTGTAAGGTGCGAATGTGAAGCTCACATAAAAACCTCGGGTCCTTCGCACCTCGAATTTTGTCGAAAATCAACTAGATCAGTTACTTTCAATAAAAGTCAATGGTTGACCCGAGCCTTTTTGGCATCTGTTTTTGCGATAATGTGAGGAATTGATATCATTAGAGTATGAATTACTGCATTTTCGCTG # Right flank : | # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACTCCATGTGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 4798-4163 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQQX01000004.1 Paenibacillus jamilae strain CN9 contig_101, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================== ================== 4797 31 100.0 38 ............................... TATTCCATCTGTCACGGTGCTGGGCGCTTGCGTTCCCG 4728 31 100.0 37 ............................... TTTTCGTAAATTCTCAATTGCATCTTAGATGTAGGAG 4660 31 100.0 38 ............................... CTATTGCGCTGTGGGGTCCCTCGTGAAATACATAAACG 4591 31 100.0 35 ............................... ATACTCGAGATCACCGTCCTCGACAACAGCACGAG 4525 31 100.0 38 ............................... TATATAGAATTTTTGTTCGCTTTTTTTTCGTCTTGATG 4456 31 100.0 34 ............................... TCTTGTTTTCTCGTCCAGAACACCATTTTTCTCG 4391 31 100.0 33 ............................... ATTGATCACATAACAAAAGCGTGTCATATTATG 4327 31 100.0 35 ............................... TCGAATGGTCCATTTAACCGTTCCATCTTCGCTCG 4261 31 100.0 37 ............................... CAAGATTCACAGCAATTTACTCAGATTGAAAAGGACG 4193 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ====================================== ================== 10 31 100.0 36 TCGCACTCCATGTGGGTGCGTGGATTGAAAT # Left flank : ACTCCATGTGGGTGCGTGGATTGAAATTACTCTATTAAAAAGAGTAACGAGATTGCCAAGCGAA # Right flank : CTAATTTGGCGGTTCGGTTTTGCGGGAATAGCATCCCGTCACACTCCATCTGTTTTATTATGCTACCGGTTAGCTTAATGACGCATCATTAGTCTAATACTTTATTGTCTTTTAGCAGCAACAACATTAAGTACTAATTGGCAGCCACTTGCGTCAATCAGAAGGGTTACATACTATAAGGAACCCACAATTCTCTTTTTTACTCAAACGAACAGACAATAACGTTACCTATGCACAGAAAAGTCTAATGGACCACTAGAAGCGACTTCTAGTGGTCCATTAGACTTTTGTTCTCATACCAACTCAAATCTGTATATTTAGCTATGTACTCTCTAGCCTGATCAAAAGAATCTTGCTTCAGAAATCGAATTGTATCGTCGAAAAACCATATCCCCATGAGTCACTAAATACGGATTTAGGGGTTCCTATGGCATAAATCACTTGCTGCTTGGAAGGCCTATCGTAAAGGGGGCTGCAGTTTCTAATCGTGAATCCATATA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACTCCATGTGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.70,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 75399-74428 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQQX01000046.1 Paenibacillus jamilae strain CN9 contig_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 75398 32 100.0 37 ................................ ACTAAGACTAAGCACTACGGACGACCTCCCATATCCA 75329 32 100.0 34 ................................ ATATGAAATTAGCAGTACAGTCGTGGGCGTTTAA 75263 32 100.0 37 ................................ ACCTTTATCATCCAAACGACCATTTAGATATTTTGGC 75194 32 100.0 34 ................................ CTTATAGGGTGGCTGGATAAGATGAGTAAATATA 75128 32 100.0 36 ................................ ATCTTTAGGAGGATAATAAACATGAAAAAACATAAG 75060 32 100.0 37 ................................ AGCTTCTATTTTCGCAGGCATGTCCACTTTTGCCAGA 74991 32 100.0 33 ................................ CGCAAGCAGTTGCTGGATATTCCAGAGTACAAG 74926 32 100.0 35 ................................ CTCTAGGTTGATTTTCCAACCTTTATAGGTTACGT 74859 32 100.0 35 ................................ TACCAAGTCGTCCCTACTATCCACATCTTTAGGGT 74792 32 100.0 37 ................................ GGTTCTATTGCTCAGGAGAGCCGGGTTATATCCCATC 74723 32 100.0 34 ................................ TCGTTATTCCGTCCATGTTTATCTATAAAAAGTT 74657 32 100.0 34 ................................ CGAAAACTCCAAAGGGTTGAAAAACACATTTGGC 74591 32 100.0 35 ................................ CCGTCCGCCACGCCGTATGTTCTCATGCAAACTTA 74524 32 100.0 33 ................................ ACATCATCAAGTGAGAGTGCTCCAGGAATCAAG 74459 32 90.6 0 .......................A...T...A | ========== ====== ====== ====== ================================ ===================================== ================== 15 32 99.4 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : ATCTTTTTTAAGGGGTTTTGTAATGTATTGTCGCACTCTGTATGGAGTGCGTGGATTGAAATCAGGAGGGACAAAAGGCGTATCGCGAAGGGCTTAAAGGTCGCACTCTGTATGGAGTGCGGGATCATGACGGAGCAGCTGCCACTTGGTTGTACGAGTGGGGAATGCTTCTTTATTCGAAATTATGATGCAAGTCCGAGAAGTGGGGGCTGGACATTTTGCGCGGTTTGGAGGGGATGGCGGCGGTACATTACAAAAAGAAAGTAAAGCATATAGGTCTAAGGAAGCTTACGATATGGAAAGCCCATTGATTTTGAAAGGTGCGAATGTGAAGCTTACATAAAAACCCTAGGTCCTTCGCACCTCGGAATTTGTCGAAAAGCATTAAGAATGCTGTCTATGAGAAGAAGACAATAGTTGATATAAGCCTTTTTGGCATCAGTTTTTGCAATAATGTGTGGAATTGATATCATTAGAGCATCAATTACTGCATTTTCGCT # Right flank : AATTTCTATTGTTGGTGCCTCCTATCGGATAAGCTGCTTATACTCCATGTGAGTGCATGGATAATATGAAACAGAAGTCTCGTTTCGTGCCCCGCCCAGCAGTAAATAGTGCAAATTTTTTTTAACGGATTCCTTATTCGACAAATTCCCCCTTACTTTTATGCAATAATTAACTAGCATTACTATGTTGAAGTATAAAATTAACTGGGGAGTTGCTTATGAGAATTTCCATGAGTAAGTTTCTAAAGCGTTATGCAACGATTTTATTGAGCTACGCCATAATCATAGGAATATTTTACGCATGGGGTTATAAGATGAGCGCTATGGGCATCTATGCAATTTTGACAGGAATTGTGACTGGAGAAATAATCAACTTCGCATTATCAAAGCGAGAGAAATAACCTATGTATCCCTTGATGTAACAACATCAGGGGATTTTTCATGTAATTAAAAGGTCCCGTGAGTTTTTGCATGTGGCCTCTATATCATTTACTGGTGGG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 76686-75766 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQQX01000046.1 Paenibacillus jamilae strain CN9 contig_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 76685 33 100.0 35 ................................. ATAATCAAAAAAGAAAACAAGCCCGGCCATAAAAA 76617 33 100.0 37 ................................. TGCCGAAGATTTTCAGTAAAGACTGGTATTATCTCAT 76547 33 100.0 34 ................................. CGGCACATTACCGGACAAACCCGCCTCCATCGCC 76480 33 100.0 34 ................................. ACTTCTCCCGGTCTGCCTAACAGATCACCTTTAC 76413 33 100.0 36 ................................. ATGCGTGATCTGGAGAACCCAGAATACACATTTGAT 76344 33 100.0 36 ................................. AGCCGCCACATTTTCATTGATGGCCTTGGTCTTGGC 76275 33 100.0 35 ................................. CTTGAAACAGTTCGGTGATTTGCCCGCCCCATTGG 76207 33 100.0 33 ................................. ACTACTGAGAAGTATAGAGAGGTAGAGAGGATA 76141 33 100.0 35 ................................. ACTCCATTAATGCTGATACCATAATCCCCTTCATC 76073 33 100.0 37 ................................. TTTAAAATGGCTTTGGAATTGGAATATATAAAGAAAG 76003 33 100.0 34 ................................. TGTGTAATTTAATCCACCCTTTCCCGGCCATGTC 75936 33 100.0 34 ................................. TACTAATCTTTTTTAAGGGGTTTTGTAATGTATT 75869 33 100.0 37 ................................. CAGGAGGGACAAAAGGCGTATCGCGAAGGGCTTAAAG 75799 32 87.9 0 ......................-.......CGG | AC [75769] ========== ====== ====== ====== ================================= ===================================== ================== 14 33 99.1 35 GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Left flank : CCATTTTTGTGGAAGTAGGTGTGAACACTTGCTCATTTTGATTACGTATGATGTAAGCACGGTAGATAGAGAAGGCAGAAAAAGACTGGCAAAAGTTGCGAAAAAGTGTGTAGATCACGGACAAAGGGTGCAAAATTCTGTGTTTGAATGTATCTTAGACTCGACCCAGTTCCGCCGTTTAAAATATGAACTCGAAGAACTGATAGACAAAACAGAAGACAGCTTGCGCTTCTACAACTTAGGAGATAACTATAAAAAGAAAGTAGAGCATATAGGGGCTAAGGAAGCTTACGATATGGAAAGTCCTTTGATTTTATAAGGTGCGAATGTGAAGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGGAATTTGTCGAAAAACATTGAAAATGCTGTCTATGAGAAAAAGTCAATAGTTGATACAAGCCTTTTTGGCATCAGTTTTTGCGACAATGTGTGGAATTGATATCATTAGAGTATCAATTACTGCATTTTCGCT # Right flank : AGCAGCTGCCACTTGGTTGTACGAGTGGGGAATGCTTCTTTATTCGAAATTATGATGCAAGTCCGAGAAGTGGGGGCTGGACATTTTGCGCGGTTTGGAGGGGATGGCGGCGGTACATTACAAAAAGAAAGTAAAGCATATAGGTCTAAGGAAGCTTACGATATGGAAAGCCCATTGATTTTGAAAGGTGCGAATGTGAAGCTTACATAAAAACCCTAGGTCCTTCGCACCTCGGAATTTGTCGAAAAGCATTAAGAATGCTGTCTATGAGAAGAAGACAATAGTTGATATAAGCCTTTTTGGCATCAGTTTTTGCAATAATGTGTGGAATTGATATCATTAGAGCATCAATTACTGCATTTTCGCTGTCGCACTCTATATGAGTGCGTGGATTGAAATACTAAGACTAAGCACTACGGACGACCTCCCATATCCAGTCGCACTCTATATGAGTGCGTGGATTGAAATATATGAAATTAGCAGTACAGTCGTGGGCGTTT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.40,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : NA // Array 3 87215-86097 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQQX01000046.1 Paenibacillus jamilae strain CN9 contig_14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 87214 32 100.0 36 ................................ AATTTCATTACTGTGCATCAAAAGCAAATGTATGTG 87146 32 100.0 37 ................................ ACTGTTTACGGAAAGCAGGACGGAACTTGGAAAGCAA 87077 32 100.0 39 ................................ TTTCACCGGGTTGAGCAAGAAGAAGCTCAGTAGAAACAA 87006 32 100.0 35 ................................ TATATGTACGGAGAAATCGTTGAACGTACCGAGAG 86939 32 100.0 34 ................................ AAAGAATTTATTTTTACTTTTGTAACTGCTGTTC 86873 32 100.0 35 ................................ TGTTCAATATCGTCCATCCGGTCACCATTGTTAGC 86806 32 100.0 35 ................................ GTACGTTGATAAAAATGATATCCAAAAGTTTTACG 86739 32 100.0 35 ................................ AACGAAGCACCTGTATACTCATCACCAAAAACATC 86672 32 100.0 35 ................................ CCAGTTCCGTTGAGGGAGGGGTCGAAGCCCAAGAT 86605 32 100.0 37 ................................ ACGGAACAGTTTGTACACTCTATCCAGCTCATAAACC 86536 32 100.0 37 ................................ GCCAAGCAAGTGTAGACGACCTAGAGGTTGAGGGCTA 86467 32 100.0 35 ................................ TATCGAGGCTGCTGGTGGTACAACCGCAAAATCAT 86400 32 100.0 36 ................................ CAAAAATCTGAAGCAGACATATACGGGTTTGGCCTC 86332 32 100.0 33 ................................ GCCTTTGTGGTCGTGGTCTTTTTTGCGCCTGCC 86267 32 100.0 38 ................................ TCCAATAAACCTTAGAACCTATTTTCATGATGACCATC 86197 32 96.9 37 .............T.................. GCGTCTACCGCTTCGGCCAGCGCATTCATGTCACGAG 86128 32 93.8 0 ....................T..........G | ========== ====== ====== ====== ================================ ======================================= ================== 17 32 99.5 36 GTCGCACTCTATGCGAGTGCGTGGATTGAAAT # Left flank : TAAGTTCCGTATTCGTGTCAATGTTATTTATCCAGGGGCCATTTCGACGAATATTGATGAAACCACAGAGAAATCGGAAGGGTTAAAGCGGATCACCATCCCTGTGCAATTTCCCGAAGGAGATCAGCCGTTGGCAGATGGACCAGGACAACCCGAACAGGTTGCTGATTTGGTGACATTCTTGGCATCTGATCATTCGCGTCACATCACTGGCGCACAAATTGTGATTGACGGGGCAGAGTCATTATTGTTTTAGAAAATGGAGCATTCTCTGGGATAGACAGAGGTTTTGTGGTATCTTAAGTGTATTCTTGCTTACGGTGCGAATGTGAAGCTCACATAAAAACCCCAGATCCTTCGCACCTCGAAATTTGTCGAAGTGCATTTATATTCACTTTTTTCGTTAGATGTCAATAGTAGATTCAAGCTTTTTAAGCATCGTTTTTTTCGAAAATATATGGAATTAATACCGTAAGGGTATTAATTCCTGCATTTTCGCT # Right flank : TGTAAAAGGTGCAAAGGAGGGGGAGAAACGTAGACTAATATACCTTCCTAGAGATGATAATAAGCAAATATATTTGAGTTTTTACATAGATCATATACCCTACATTTTTCGAGAATCTTCAGAGTTAAAGTTCTGGAGATTTTTTTCTCTATTAAATTTTGCTAGAAGGGAGAGCAACCTATGTTCTATTGGTTTTTCTGCTTAATAGGTTCAAGACATAATTTTAAATAAAGCTAGCTGATTCGGATGAGTCTACTATAGAGGCTATTCTAAGTTTTTTCATTATCGTTTTTATTAAAATTCCAAAATATCAAGGAATGTACTTATATATAAGTTTATAGTCCATTACAGTTACAGAAATATTTTAGGTGAAAAGGAAGAAGGATAGTAGCATAAAGAGGAAAAAGTTACATTTTTAAAAATAAGAAAACCCGCTAAGGGCGGGCTTCTCTAATACAATTATATAATTTTCAATCCACGCTATACAGCGACAAGTCGAG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGCGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.40,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //