Array 1 3479-2422 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_UIDL01000018.1 Klebsiella pneumoniae isolate ID_29, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
      3478	    29	  93.1	    32	............TG...............	TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA	
      3417	    29	  93.1	    32	............TG...............	TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA	
      3356	    29	 100.0	    32	.............................	AGGTATTTGACCTCATCCAGAAAGGCACAGAC	
      3295	    29	 100.0	    32	.............................	GCACCCTCACGTATACCTTTTGCACAGTGTTA	
      3234	    29	 100.0	    32	.............................	TTACCAATGGGGAAAAATCTTCATTTGTAAAT	
      3173	    29	 100.0	    25	.............................	AACATCAGTGGAAATCCACTGCGGC       	Deletion [3120]
      3119	    29	  96.6	    32	......T......................	CGAAAACGGCAACCTTCATAAAAACGTCTTTT	
      3058	    29	  93.1	    32	............TG...............	CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG	
      2997	    29	 100.0	    32	.............................	TGTGTGTTGGCGTTCGTTAAATATTGTTAGTA	
      2936	    29	 100.0	    32	.............................	CAGGTTATACTGGCAAAACGTCGATGGCTCTC	
      2875	    28	  93.1	    32	.....-.......T...............	TAAATCAGCAAATATTGTTGTCTACCGTGTCG	
      2815	    29	  93.1	    32	............TC...............	AGCAAATCGAAAATCCGGCTGTTTGAAAAATG	
      2754	    29	 100.0	    32	.............................	TGAGGCTGCTGACGGAGAAATGGGACCTGTTC	C [2749]
      2692	    29	  96.6	    32	..............C..............	CCGACCCGGTGCCCAGGAGAACTGGCTGAATA	
      2631	    29	  93.1	    31	.............G.A.............	TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 	
      2571	    29	  93.1	    32	...C......................T..	CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC	
      2510	    29	  96.6	    32	.............T...............	GGCATGAGCGAGAACCACTGCGAGAGTGTGGT	
      2449	    28	  89.7	     0	..........A............-....A	|                               	
==========	======	======	======	=============================	================================	==================
        18	    29	  96.2	    32	GTATTCCCCCCGCATGCGGGGGTTATCGG	                                	       

# Left flank :   GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA
# Right flank :  CATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAACTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAAC

# Questionable array : NO	 Score: 5.64
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.59,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTATTCCCCCCGCATGCGGGGGTTATCGG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [7,3] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-12.70,-12.10] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [13-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.74,5.18   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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