Array 1 8337-8776 **** Predicted by CRISPRDetect 2.4 *** >NZ_CH981522.1 Paenibacillus larvae subsp. larvae BRL-230010 SCAFFOLD151, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 8337 32 100.0 37 ................................ TATGACCGGGTATCTGCTGTTGCAGAAGCCGAAGGGT 8406 32 96.9 36 ..................A............. ACGGTATGAATCGTAAGTCGCCTGACTCACGATATG 8474 32 100.0 36 ................................ CGTTCTGTGGCCAGTGTCATATGGCGACAGGCGAAT 8542 32 100.0 34 ................................ AAAAACCCCGATTATGTGGCGGCCGTCCGCACGC 8608 32 100.0 34 ................................ CATGAAGTAATTGCAGTTTCGAACAACGCTAAAG 8674 32 90.6 38 .........C.T.T.................. TATAGGTGTCACAATACCAGTCGTATCGTAAATTTCTA 8744 32 90.6 0 .............T......A..........C | A [8760] ========== ====== ====== ====== ================================ ====================================== ================== 7 32 96.9 36 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : GATTCAGAGGTTTTGGAGGTCTTATGAATGTTCCCAAAAAGCTTTTTTATATATTGCAATACCTAGTTCTTTTTATAAAAAAGCATTATCGACTTCATTTTTCAAAAAAAATGAGATTTTTCAGTGACGAATTTACTTATTACCTACTAACATTTGCAGAATGTTAAGCACATGCTTCACTTTGTCAGAAACTTTTTTTAAATGCGCGTTCCCTTTAACCATTTTTTGGTATCCACTATTCTTGAAATATGTTCTTCTTCTCCTTTTATTCATCTCCTACCTTTATAAAGTGAAGGAATTCAAAATCCTGCCTATTAGAACATGGATGCATAAAGTGTTTATTAAAGATGCGTTATTTGAGTTAAATGGAATCATCCTGATTCTAATCAACTTAGTCATATTATTAGAAATTAAGGTTTTAGCTATTCTCCTGTTGCTTTTTATTTCTCAGGCTTGGATGGGCTTTTTCCAGAGCGCGACGTGCGTCAATACGAGTCAAT # Right flank : CTTCCGATAAATCCTACTCAAAATGCTCTTTTTGGTTGTATTTGATTTTACTTAAAATGGACCGGCCTTGCCTAAAATAGGTTGCTTCAGTTTTCTGTTTTATCTCAGATCGAGCCGGCCACTTATGCTAGAAAAACGTTTTCACCTGAAGGGAAATTTATCAATTCAACATAAATCTTGAAAGACCTAAGTAGGGGATAGGACATGGTCTACAAACTGTTTCACAAATTATTATTTTGGAAAGAAAAAAGCCGAATAATCAGTTCCCCACTTTTACAACTCAAAGAACAAACCCGTCATATCCTTTTATACCTACAGTTTGAATAGCAGTTGAATCTATATGTGACTCTTCATATAACAAATCAATAAATTGACGAACCTCATGCACATTTATGTCATCACTGTTATTCTCAATTACATCTTCATTGTGTACATTATCCCCAATAATTAATAACCGTACCTGGTCTGGAAAGCCAAGGGCCCATTTCAGATAGTAGGGG # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.00,-9.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 11024-11389 **** Predicted by CRISPRDetect 2.4 *** >NZ_CH981522.1 Paenibacillus larvae subsp. larvae BRL-230010 SCAFFOLD151, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 11024 32 100.0 34 ................................ ACATCATCTGAAACACCCTCAGGAAACAATTCCT 11090 32 100.0 36 ................................ AACAATTACAAATATGCAACTGAAGCAGATGTAAAT 11158 32 100.0 37 ................................ CATCATCAAAATACAAACCGAATTGATTGCTATTCCC 11227 32 100.0 34 ................................ GGATAATTTCCGAAAGGTTATTTTGGTTTTCAAT 11293 32 100.0 32 ................................ CAATTAAGCCGACCGCCATATAGCGCGGCTAT 11357 32 84.4 0 ...............A..AGT..A........ | C [11385] ========== ====== ====== ====== ================================ ===================================== ================== 6 32 97.4 35 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : ATGCTAGTTTAACCATATTACATTTATTTTTTGAGGCATATTGACTAATAAATGAATAGGGAAGGTGATGGGAGGGCATTTGAATTGTGGAATTGGGTTTTCCATAGAGGTAAATATATGCCATGTTGGATATTTCTCGCGCTAGTAATGGAAGCTGATATGGGGTATTATGGAAGTGAAAAGGAGTGTACTTCTGTAATTGGACATTTGTAACTGACAAATGTTTTCATAAGCAGGTGATAGGGTAGATATTACGTCAATCGATATTAAGGCTAACGGGTGTAAAAGAAGTAATTGATTTGGAAGGTCTATTCATTTTCTAGTGCGAATGTATAGTGCACATGAAAATCCCGGGAGATTCGCACCATTATTTCACCAAAAATATACAAATATCTGGATATAGGTATATTTGATTGTAATAAATTTGAATCAAAAAATCATTGTTTGAATGATTTAATCAAAAAAATGTTCAATTTTGATTGTTTTGTTCAAATTTCGCT # Right flank : TAAAAACTAGAGGCTTTGACCACTATCAACTGTGCCGTGCGATCGGACGGAACGACGCGAAAAGGCATCCTATTTTGTGAACTGCACCCTGTCAAGTAGACAGTACAAATAATAAAAATTAGTTAAGCGGCCTTGATCCTGAATTCCATCGGACTAAGGCCGTTTAATTTCGCTTGTAATCGCTCGTAATTGTAAAAGTAAATGTAAGCCTCAATGTCCCTTTCGAGATCTTCAAAGGTATGGTAAGTATGCAAATAATACTTCTCACATTTTAGGGCTCCCCAGAAGGATTCCATGGGGCCATTATCGATACATCTGCCAACTTGAGACATGCTCTGCATGATGTTTCCTTTCTCCAGGATCTTTTTGAATTTTTGCGAGGTATATTGAAAGCCCCGGTCACTATGCAGCATGGGCCTGCTGCCCGATGCCGCTTGTATCGCCTTGTTGACGGTTTGAAACACGAGGCCATTATTGTTGGAGTGCCCGAAAACGTAAGA # Questionable array : NO Score: 9.13 # Score Detail : 1:0, 2:3, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 19453-19160 **** Predicted by CRISPRDetect 2.4 *** >NZ_CH981372.1 Paenibacillus larvae subsp. larvae BRL-230010 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 19452 31 100.0 33 ............................... ATTGCCCGCCGCGTGGGCGTCGTACCTGCCCTT 19388 31 100.0 35 ............................... GCAGTAGCGACAGTGTATTCAGCAGTTATAAGTAG 19322 31 100.0 35 ............................... TCACACAGCCCTCCTCAAATTATCCGCCCTTTGGC 19256 31 100.0 35 ............................... GGAGATGAAAGCACTTTGTGAACAAAAAGAATTGG 19190 31 93.5 0 ................A.............G | ========== ====== ====== ====== =============================== =================================== ================== 5 31 98.7 35 GTTTGACAGTAACACATGGTGTATTGAAACT # Left flank : ATTTATGCCATTTTTGGAGAAAGACCGGAGGTAGAAGGAATATGGCTAAAAATTATCATTACGTCATCCTTGTGTACGATATTGGTGAAAAACGGGTGGGCAAAGTATTCAAAATATGTAAGAGATACCTTGTTCACTTTCAGAAATCCGTATTTCGGGGCGAAATTACGCCCTCCAATTTACTGAAATTGAGAAACGATTTGAAGAAGGTTATAGATAAGGATAGCGACTTTATCGCTATTTTTAAAATGACGGGTGACTATGTATTTGATGAAGAAGTTATCGGTGTAAGATCGAACAATCAGGAGTCTTTACTCCTCTAATTTTCCCAACCTCTTTTGCACTATTACTTGGCTTCAGTCTTAGAACCATAAGGGACTTTCACTCATTTAGGTTCGTTTCCTTTTTAAATCCATTTCGGTTGGGAAAATTTTGCGAAACCCTTGGTACTGTAGTAAAATATGCACATATGGCTTTTGGAAAAGCTTGATTTTATTAGG # Right flank : GCTGTGGGTGAGCCTGTCAATCACATACTTTGGACTTCTGTTAATAGATTGGACACCTAAAACCGAGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCTTACGGATTGAAGTTTGAATTCCTTGTCATACTTTTTCGTCATGTCGGACACCTCGATTATGAATGTTTTTATTGTCGCACTCTCAGTTCTCTGTGTCCAATTTAAAGTCTAGCATCACTTTTTAGCGTTTGACAGTAACACAAGGTGTATTGAAATTGTCGGCAGCAAGAGTTCTGTCGGTTTACGTTGAATGTTGGCAGTAACACAAGGCGGATAAACCCTTAAAGTTGGACACGCACTCACTTAATCTTGCGGTTTCATTAAATTTCATTTAGACTCGAACTACTTTGATCGGAATCGCTTCCACTTGGTTCTGACTGTAAAAT # Questionable array : NO Score: 3.00 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGACAGTAACACATGGTGTATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 2 29232-29003 **** Predicted by CRISPRDetect 2.4 *** >NZ_CH981372.1 Paenibacillus larvae subsp. larvae BRL-230010 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 29231 30 100.0 36 .............................. TGGTGTGGGTGATTCCGTGTCCGTCCACCATTTGCC 29165 30 100.0 36 .............................. GGAAAAGTATCAGGCAGACGAATACCGAATCATTCC 29099 30 100.0 37 .............................. AGTTCTTCCATTTCCCAATACTCTTCCGTTTCCGTAT 29032 30 83.3 0 ......A........A....A.......CT | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 95.8 37 GTTTGATAGTAACACGAGGTGTATTGAAAC # Left flank : ACTCTTTTACTCATCGATGTAGCATATTGGATGTTAGCTCGTAACGTCTTGCCACGGCTGCTTTGTTTCTGGTTTCCAGAGCTTCCTTTACAACCTGTACCTTAAACTCGTTGGAATATTTCGTCCGTCTCATTTATCATCCTACCCTATTACTTGTAGTATAAACAAAACACACTTTTATTGTCCAAGTTCATTAGGGGGCTTTAGAACTAGCTTCTAAACATGGTAAATGCTAAGAGATGTATAGATTTTTATTAATTCCTTTTAAGAACTCATTACATATATTCAAAAATAAGTAGAAGAATAAAAAGCTTTATCTCTAATTTTCCCAACCTCTTTTACAGTGGTATTCGTCTTCAGCCTTAGAACCATAAGGATTTTTGCTCATTTAAGTTCATTTTATTTTAAGGTATATTTCGGTTGGGAAAATTTTGCGAAACCCCTGGTACTGTAGTAAAATGTGGACATACGGCTTTTGGAAAAGCTTGATTTTACTAGGG # Right flank : TCGCAAGCTGTCTATCTCCACTTGGAGAGCACGGCTTGATAGTGCCATAAAAATAAATAGGCCATTCCCATTGGGACTGGCCTATTTTACTTACATTAATAGAGTAAATCTCTTTAAACAAATAAATAATGAAAATTTTATTTACAAATCAATTTTGTTTGGTATAATTTAGGGGGTTGATAATTAGAAGAACGTCCTACGTTACGGTTAGAGTTTAAGCAAATGAATAAATTTAAATGCGCCTTGCGCTAGGGTCCTCTTATTTTTTGATGTTTACTGTACTAGTGTACTATTTATTGGAATCCCTTTCAATACTAAAAATTTCTCAACAAAGGAGGTGAAAGAGATGTTTTACGAACTTAAAGCAACCGTGCTATTAAAACAAGAGGTCCATTACTTGCATGTACCGGAGCGAATTGGTTCCTGGATTAGCCGGGCGGCTCTAAATGATCCGGTATTAAAGCAGGAGCATTACTCGACAGGGTATAAGCACATTGTTT # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:0, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGATAGTAACACGAGGTGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.60,-1.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA //