Array 1 232182-233200 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMDY01000002.1 Halosegnis rubeus strain F19-13 NODE_2_length_485286_cov_12.792458, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 232182 30 100.0 36 .............................. GGCGGCAGAGACGCGGAGCGCGGCGTTGAATCGTGG 232248 30 100.0 37 .............................. TACCTCGCGGGCGAGGGTGACCTTGCCGCGCCGACCG 232315 30 100.0 36 .............................. GACTCCCGCGCAGAGTCGTGAGGTGCAGCAACCATG 232381 30 100.0 36 .............................. AGCTCCCGGCCAACGTCGCCATCGCGCTCGCGAGTC 232447 30 96.7 36 ..........................G... CTCAAACACCCGATAACGATTGCGAGCGGCGTGTTC 232513 30 100.0 36 .............................. GGATGTTGTAGGTCGTGCCGCGTGTCTCCTGAAACG 232579 30 100.0 34 .............................. GACCCCGAGCGACCGCCGAGCGAGGGCGGGAAGG 232643 30 100.0 38 .............................. GCAAACGCCACCGCGTCGGCGTGGTCGTCATGGCCGCC 232711 30 100.0 35 .............................. GCCCTCCTCGAGCATCTCGGGACCACTACACCAGT 232776 30 100.0 33 .............................. AACTGTTGTACGGCGCGAAGATGACGCGGCCGT 232839 30 100.0 38 .............................. ACGCCCTGTCCGTCGTCTGTGTGGTCCATCGCCCGCTG 232907 30 100.0 35 .............................. AATCACCCACCGGAAATCGCCGTAATCATGCAACG 232972 30 100.0 35 .............................. AGCATCATCCATATTCGCCCACTCCGGCGGCGAGT 233037 30 100.0 37 .............................. ATTGTACTGGCTGGAATCAACCCTGTGCTTGCCGAGA 233104 30 100.0 37 .............................. ATTGTACTGGCTGGAATCAACCCTGTGCTTGCCGAGA 233171 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 16 30 99.8 36 GTTACAGACGAACCCTTGTGGGATTGAAGC # Left flank : GAATCCCCCCTTCGTCGCCAGCAGTATCGCCTCGCGGGCTACGTCGCTGTCGGCGACGGCGCGGCCGACGACGCGCTCGGAGCGCTGGTGGCGGTAGTTGATGGCCGTGTCGATGACGTTGACACCCGTCGCCAGCGCCTCGCGGATGGCGGTGTAGTAGGCATCGTCGCGCTCGTCGGTCGCGTCGCCGAGGTAGGTACCGACGCCGACCGACGAGACGAGCCCGTCACCGAACCGGCGGAAGTAGGTGCGGGCGAATGACTCGTGGAACTCGTTGCGGTATGCCCACGACGCGTCGCGGTTCATACCCAGCGTTCGGGACGACGGAGGCTAACGGTTCCGCTCTCGCAACCGTTCGGCCGTTCGAACTGAGGCTCGTTCGATGGTCGGTCGACGGCAGATTTCATCGACCTCCGGGGGTTCTGGGGGTATTGAGGGTCGACGGAAACACTAAGTCCCGAACACCAGTATAGCGGCGTGAGTGCCACGAATTGGGCACG # Right flank : CGGGCCACTCATGACAATTTTGTCGACGCTGCACTTGTTACAGAAAGGAGGGCCGATAGCGACTACGTCGATTCCTGCCGGTACGCCTCTACCGCTGTGGCGTACCCCTCCCGATACGTCGGATACGTCAGTTCGTACCCCACTTCGTGGAGCAGGTCGTTGCTGACGCGCTTACTCGTGAGAATCCGGCGTTGGGCCGGCTCCGAGAGGTCGCCCGCGTCGAGTCGCTCCTGTTTCGTCCGTTTCTCGGGGCGCGGTACGTCACACGCGTCGGCGAGCCAGTCGGCGAACGCGTGTTTCGAGGCCGGTTCGTCGTCGGCGACGTTGACGACCGACGGTTCGACGCCGGCGAGCAGATGCGCGACCGCACCGGCTGCGTCGTCGCGGTGAACCATATTCAGATAGCCGGCTGTCACCGGCCCCTCCAGATAGCGGTCGAGGCGGTAGCGGTCCGGGCCGTACAGTCCGGCGAATCTGGCTACGGTTCCGTCGATACCGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.20,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 272829-272344 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMDY01000003.1 Halosegnis rubeus strain F19-13 NODE_3_length_373060_cov_9.361068, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 272828 30 100.0 36 .............................. CGATATTCTCGAAGAGGGGCCGCCTGGGAGCGGTGA 272762 30 96.7 33 .......G...................... CCGTGCTCGCGTGCCCACTTGACGACCGGCCGG 272699 30 100.0 35 .............................. CGTAAGCCGATGACGGCCGCCGAGCGACGTGTCGC 272634 30 100.0 41 .............................. ACCCCCTCGCCGGTGAACATCCGAACGGCGTCGCGGTGCGG 272563 30 100.0 34 .............................. AGAAATGGATATTACACACCTAACCCGTGGCCCA 272499 30 100.0 33 .............................. GCTGCGTCGGTCAGCGTCATGTAGCTGTGAACT 272436 30 100.0 33 .............................. GCTGTCGTTGTGACAGTCGCGGCTCTCGCGGCT 272373 30 93.3 0 ......................G.....A. | ========== ====== ====== ====== ============================== ========================================= ================== 8 30 98.8 35 GTTACAGACGAACCCTTGTGGGATTGAAGC # Left flank : ATTCCTCGATGTCGCCGACGAGAAGACCGAGCGGGTCTGCACGGAGAAACTCGGGTACCTAGCGGAAAGTCCGTACCCGGGCCGTGGTCGTGGGGACAAAGAAAAGCTCCCCATCGATGGCCGGCGCGACCGGTACCGGCTGCACGTCTCTCGGACCTACACGGCTATCTACACCGTCTTGGAGGACGAGAACGAGGTGCGCGTGCTGGAGATTGTCTCCATCGATCAGGCGCACAAGCGGTACGGATTTTAGATAACAGGTAGTCGACTCTGTTGAAATCCTATTGATCAGACACTATCTGCGGTGAAATTGACCAGTACAATGTCGGGGAGACAACCACGGCCTATGTCGTGCAAGGCTCGCCCTCGAAATCATATCTTAAGATAAAGTAGCCCTCTACTACTTATATTCGGCATCTTAGGCCTATTCCTGATCGGAAGACCAGTCTTGTGGGATTGAAGCGGAACGGTTCGACCATTCTGGGTGATTCTCGCCGATT # Right flank : AGGATCGACTTGGCAGACAACCAGATACGTACCGACAAAATCGCTCCCGCGCGTCCCACCGACGGCCGGGAGTAATCCACCAAATCGCCAAACAGCGTTCAGACACCCTCGATGCCACCCATTGACCGTAGCTGATTTTCACTCAGCGCCTCGTGGAACTGGCTAACGACGACACAAGCCTCCGTCGCTTCTGCCCCCCCTCTCCCTCTCTCAGCCCCCGCTCGATCATGACATGGCTCCAAGACGGAGCAGTGCCTGCGAGAAACGAACCAGCCACAGCGGTGAGGAGGAAGCCAAGGTTGAGAACCCTGGCATAAATCAACAACACCCATGCCGTTTGGCTCTGGCTCAGTAAGGCACTGACACTCCCGTCGATTGCCACGGCATCGGCGTCGAAGTCGGTCGCAAGTCGGGCAAACAACGTCCAATCACTCGGCCCCACCCGGCTGAGACAGGCGATCATCAATGCCACCGCTGTGGCCAGCGTCGCCAAAGCGACG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //