Array 1 115596-114652 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDAB01000002.1 Escherichia coli strain TVS354 NODE_2_length_411602_cov_30.3386, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 115595 29 100.0 32 ............................. CAACTCGCGGCGCTCGGAACGTGGCGCTATAG 115534 29 100.0 32 ............................. TAAGTTGGTCAGGTCTTCAATGTTGTTGTAAA 115473 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 115412 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 115351 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 115290 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 115229 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 115168 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 115107 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 115046 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 114985 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 114924 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 114863 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 114802 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 114741 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 114680 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 142604-141294 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDAB01000002.1 Escherichia coli strain TVS354 NODE_2_length_411602_cov_30.3386, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 142603 29 100.0 32 ............................. TCTGCGTGTCGTGCTGTTGCGCAGCCGGACGA 142542 29 100.0 32 ............................. CCGATAAAATGCAAAAAACGCGGCGTTTTTTG 142481 29 100.0 32 ............................. AGGCATCGCATGTCGCCATTCCGATCGGGGAC 142420 29 100.0 32 ............................. GGGGTATGAGGGCGCGATCGTGGTACAGGAGG 142359 29 100.0 32 ............................. CGTAGCGCCGCAGAGCATTTACGCGAGTTATT 142298 29 100.0 32 ............................. GAGCAACAAAACAATGAATCCAACGGATTGCC 142237 29 100.0 32 ............................. AACAAGCTCGCCCGGCCCGTCCTCATCAAGGG 142176 29 100.0 32 ............................. CCACTGCACTGACTCTCGTGCGTACGCTGCGG 142115 29 100.0 32 ............................. GCTGGCAACTGAATGCCCGCCGTATTGCCTTT 142054 29 100.0 32 ............................. CAAAGGCCCGCCAATGCGGGCCGATTTATCCC 141993 29 100.0 32 ............................. CCGGACGAGAAATTCACGTTCCTGCATTTCAT 141932 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 141871 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 141810 29 100.0 32 ............................. ACGAAACGCAGTACGGTTTTGTCAGTTAACAC 141749 29 100.0 32 ............................. AACTCTCACCGGAGCAGAAAAAAAGAAACCAG 141688 29 100.0 32 ............................. GCGGACGGCAAAACAATCGGGAGTCTGGACAA 141627 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 141566 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 141505 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 141444 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 141383 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 141322 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATATTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //