Array 1 66397-68316 **** Predicted by CRISPRDetect 2.4 *** >NZ_AWWC01000006.1 Jonquetella sp. BV3C21 contig00002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 66397 29 100.0 32 ............................. AGCGTAGACGCATGATCTGTGACTTTTTGTAA 66458 29 100.0 32 ............................. GGTACAGCGAAGTTAGAGAAGTCAGTTTCTCT 66519 29 100.0 32 ............................. CAACATGGTTCTGTAAGAATCGAGGGAAACAA 66580 29 100.0 32 ............................. AGATACTTCAAAGGGTATGCGTTTTTCTCTGC 66641 29 100.0 32 ............................. AAAAATCCCCTGTCCAAAAAGGACAGGGGATT 66702 29 96.6 32 ............................T CAAAAATAGGACTTATCATTCAAGCGTGATGT 66763 29 100.0 32 ............................. ATAAGGACGTACTCAAAGCAATTAGGACGCTC 66824 29 100.0 32 ............................. CAAGGAGAACCGCCGGAGCCAACGCGCAGCAC 66885 29 100.0 32 ............................. GCAACTTAGCTTTCTCTCAAAACGCTTTACCT 66946 29 100.0 32 ............................. GCCCCCTTCAATAATGCCGTCGATGGAGCCGG 67007 29 100.0 32 ............................. AACTGTAGTCACGGAAGAGCCGTCTTCGTCAA 67068 29 96.6 32 ............................T ACACAAGGCATGGACTGGGGCCGTAGCGATGA 67129 29 100.0 32 ............................. CAAGGAGAAGTCAGTCGACAAGGAGAGCCAAC 67190 29 100.0 32 ............................. TACCTAAGGCCAAATCCCCGGTCGTTATCGCG 67251 29 96.6 32 ............................T TACAACCGAATCATCATCGCCGGCAACATTAC 67312 29 100.0 32 ............................. AAAACCGATCAACTGCTCCACAGGCTTCAAAC 67373 29 100.0 32 ............................. ATAAGGACGTACTCAAAGCAATTAGGACGCTC 67434 29 96.6 32 ............................T TCAAAGATTCTTGGATCTTGGAACATGGAACA 67495 29 100.0 32 ............................. GAAGTTACCGTCGAACGACGGTATACTGAGTT 67556 29 96.6 32 ............................T TCCCTGATAATCATCAGGGCGCACATATAGAC 67617 29 100.0 32 ............................. CACTCTAAGGCACTATAAAAGTCCATAATGCC 67678 29 100.0 32 ............................. GATTTGACGAAACTAAAAAGCGGCGCCGAAGA 67739 29 100.0 32 ............................. TCTGCGCGATTGACGGTGACGGGCTGGCCGAG 67800 29 100.0 32 ............................. AGCCAGGTTACACCGTTAGCTATGCTAACGGT 67861 29 100.0 32 ............................. TTGACGCCCTCTCCGCGTACTGGAACGCCATC 67922 29 100.0 32 ............................. GAGCTACAGCGTCATGTCATCTATCCTGTTGA 67983 29 96.6 32 .......T..................... TTTCGCGTGGCCTGCGGCGCATAAAAGCCTAG 68044 29 100.0 32 ............................. CAGTGTTTGACGCTATCGGCGCAGTTGGCCGA 68105 29 100.0 32 ............................. AAGACCGCAATCGACAAGAACAAGACGGACAT 68166 29 96.6 32 ............................T TGATACCTTCTGTCTCTGACAACTTGATAGAC 68227 29 100.0 32 ............................. GCCACGGCTGCGGCTAGGCGGGCCGGGTTCAG 68288 29 82.8 0 ...GT......T..............TT. | ========== ====== ====== ====== ============================= ================================ ================== 32 29 98.7 32 CTGAGCTCCACGCAAGTGGAGATGTCCCC # Left flank : GGCAAGCTACCTCGAAGAGCCAGGGATGGACTTGGAGCGGCACGTTCGAAAACTCATCGGACAGGAGCTGTACCGTCAGAAAGTCATTTCAAAAATGATTGACCAAATCAAAGAATTGATCCTGCACGGTCAATCTGACGAAGCACTGGAAGAAAAATCTCCATGCTGGTACTGATAACAAATCAGGTCCCAATGAGAGTTCGAGGCTTTCTTGCTGCCTGTTTATTAGAAGTCGCTCCGGGGGTGTACGTGCACCCGAGAATCAACGCTGGCGTCAGAGAGCGCATTTGGAAAATCATGACCGAATGGAGCGTAGAATTTTCGCAGGAAGCTTCTGTGCTCGCCCTTTGGCCGGCTCCGAAAAGCAGCGGCGGCATCAACATTCGGACGATCGGTATTCCTCAGAGGACGCTGATCGATTATGATGGACTCGTGTTAAGCAAACTAACGTCAGCAGACACAAAGGCATTAGAAAGCTAGGGGATAGTACAAATGGAAGA # Right flank : CGCCTCAGCAGCGACCAGACGGGCAGGGTACAGCTGCCCTCCGGCGCGCGGAGGCGATCCTTGGCTCGGCTCCGCTTACGGCTTGTTCGACCAGTCATTCGTTCAGGGGCTGGAACGCGCCCCGGGCGGTTCTTACTTCCCGCGCCCTGATGGGCGCCGCCGCTCGGGGCTTTGTCTCGTCAGCGAAAAACGACTTCTGGACGCTCTCCGGACAGGCACTCATTAACAGCGCGACGTGGGCGCCCCGCCTTGGCTCGGCCGAGTACTTCTGGAAGAACTCGGCCGGCTCGCTCTACCAGTCGATGAGCGACCTCAAGGGACCGGACGGAAAGTACCTCGACCCCAAAGTGGCTCGGACCATGGCGACGGGCTTCGGCTCAATCGTCGCGGCCATCGAATACATGTCCCTTTACCGTATGGCCGGGTTGGTGATCCCGAGCGCCCTCAAGAACGCGCCGGGCATATCCCGCTTCCTATCGCTGCCCGAACAGCTGCGGAAC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGAGCTCCACGCAAGTGGAGATGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.90,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 8180-7618 **** Predicted by CRISPRDetect 2.4 *** >NZ_AWWC01000019.1 Jonquetella sp. BV3C21 contig00009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 8179 32 100.0 34 ................................ TGGCGACCTTCGCTCAGGGCGTTTTAAACCTATG 8113 32 100.0 34 ................................ AACGTACCCGCTCATGCTCCAGTTATGCCCGGCG 8047 32 96.9 34 .....................T.......... TCGCTCACAGGTCCCGCGCCGTGGCTGGTGACCG 7981 32 100.0 34 ................................ AAGGGGCATACACCTTGCCTATCGATCCACGTCT 7915 32 100.0 34 ................................ AGATAGTTTACCAACGACCAACGACCTCTTGGGG 7849 32 100.0 35 ................................ AGATAGTTTACCAACGACCAACGACCTCTTGGGGG 7782 32 96.9 35 ......................A......... CCGTACCTTCCGAGCAGCAAAGACATCCGACAGCT 7715 32 96.9 35 .....................T.......... AATCAATCCGTCGAGTTTGATACTTCCAAGGTAGA 7648 31 78.1 0 ........T.-..........AC....TC..G | ========== ====== ====== ====== ================================ =================================== ================== 9 32 96.5 34 GTCGCGCCCTACACGGGCGCGCGAATTGAAAC # Left flank : AGGACAGATGAGCGAGCATGACAAAGCGAAGCAGGGCCTTGGCGCGGCGCAGGCGAAGGTGACGGAGCTCGAGGCTAAGATCAAGGCTATGGAGCTCTCGGCGCTAAAAGCTCGCCTTGCGGCGGCGGCAGGCTTGCCGTCCGAGCTGGCGGACCGCGTTCGCGGTGAGGACGAGGAAGCCATCAAGGCCGATATCGAGGCCTTGAAAAAAATCATCCCGGCAAAGAGTGCCGGCGGTGCGGGAACTCCCGCGGCAGGCGCGAAAGCGTCCGACGACCTGCAGATGTTGTACGCGAACGCGCTGAAAAGCGGGAATATCGAAGAAGCAATGATCTACAAAAAACAACTTTTTGAAAAAATAGGAGGTTAAAACACCATGCCTAACGTAAACGGAGCAGCAACTACTTTTAATCTTCCCAACTATGTGGGCGAACTTTTTCTTGTGGGCAACTACCAGACGCCTTTTTTGACCATGATCGGCGGGCTGTCGAGCGGCGGTC # Right flank : CCCTTACCCGCGCGTGTTGCACCTGTTCCACGTCGAGCCGGCCTGCTGTCCGTTTTTGAACAGCAGGCCGGCTTTGCGTCTTTCGCGGTTCTTCGTTCCCGTCATGGCGTCATATAATAGGGAGCCTGAGACGATTTCCGCCGCCCTCCTGACGGCTGAAGGAGGAACGTTATGATTGGGCCAATCATCGGCGACTTTTGCGGCTCGCCCTACGAGGGGCGGCCGGCACCGAAAAACTTAACTCAACTTCTGTCGCCGGCCTGCCGCTGGTCCGACGATACGGTTCTGTCGGTTGCCACGGCAGAAGCCCTGCTCGACGGACGGACAGACGCGGCCGGCTTTGCCGAGTACTATATGAGCTGGGGAAATCGTTATCCGCTGGCTGGGTACGGCCCGGGTTTCGCTGGCTGGCTGGCGGTCGGAGATCCGACGCAACGGCGCGCCAGTTGGGGGAACGGGAGCGGGATGCGCGCTGGGCCGATCGGCTGGGTGGCGTCTTC # Questionable array : NO Score: 9.08 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTACACGGGCGCGCGAATTGAAAC # Alternate repeat : GTCGCGCCCTACACGGGCGCGTGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 10417-10117 **** Predicted by CRISPRDetect 2.4 *** >NZ_AWWC01000019.1 Jonquetella sp. BV3C21 contig00009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 10416 32 84.4 33 .G...C....G.T........T.......... TGGGACTGCGTCCAGCGCAAAGAACCACCTGAA CCA,A [10398,10412] 10347 32 96.9 35 ......................A......... CCGTACCTTCCGAGCAGCAAAGACATCCGACAGCT 10280 32 100.0 34 ................................ AGCCCGTCCGGCGCGACCTGACTGTAGCCGTTGC 10214 32 100.0 34 ................................ TTCGGTTCACCTGCAGCCGTTACGTCTCTATCGT 10148 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 5 32 96.3 34 GTCGCGCCCTACACGGGCGCGCGAATTGAAAC # Left flank : ACGCTGTGTATCGCCACTCTGGCGCCGATAGCCATGCCTCATCTTCGTGCACTTGTACAATAACCGAACACTGTCATGCTATACTCTTTGCAACGCGCGGTAAAAACGTCTATCACAAACAGACCTAGCGTTCCGTCCTCTTCTGCAGTTTGACGTGTGAATTGAAACCATATTATTTAGTTTATTAAACTATTACGTCGCGCCCTCACGGGCGCGTGAATTTCAAGTCTTTACCCAGCCGCGCGTACTGCACCTGTTCCACGTTGAGCCGGCCTGCTGTCCGTTTTTGAACAGCAGGCCGACTTTGCTTTTCCACAGTTCTCAGTTCTCGGTCGACGTCTTATAATTAGAAAAACGCCAGCGTTTGAAGGAAAGCGGTCACGGTTAGCCTGATCATTGGCGACTTTTGCGGCTCGTCCCCCGAGGGACGGTCGGCGCTCTAAAAACTTCGCGCGACTCTGCCGCCAACCCGCTGCTCCGACGCTCCCTCAGTTGCCACA # Right flank : CGACAGCGCCGGACGCAGTTGGAACATGGGCAGCTATGCGGAGATGCTGAGCCGAACGACGCTGATGCAGGTGCACAACGCCGCCACGTGGAACGAGTTTGCCGAACACGGCGAAGATCTGATCCAGATCAGCTACCATACGCCGACCTGCGAGATGTGCGCGCCGTGGAACGGCAAAGTGCTGAGCCTGACGGGCAAGACTCCGGGCTATCCGACGCTGACAGAGGCGGAAGGAGCGGGGCTGTTTCACCCGAACTGCCGGCACGCAAGTTCTCTTTTCCTCGAGGGGGTAGATTCCAAGGAGCAAGCGCTGCCGGAGTGGATGCGCGGCGGCGCGGCCGACAAAGCGCGCGGTCATCTGGAGCCGGGCGAGCTGACGGCAGACATCATCAAAGCCGACTTCAAACGCGCTGGTCAGACGATCAGCGACGCCGAAGCCAAGCAGATACGCCAGGATATCTACGACTACACGACTGAGGGCGGGGGGTACGGCAAAATCC # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTACACGGGCGCGCGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 19163-21439 **** Predicted by CRISPRDetect 2.4 *** >NZ_AWWC01000019.1 Jonquetella sp. BV3C21 contig00009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 19163 32 100.0 34 ................................ CTGTTTCTCCGGTTGGTCGAGATGACAGAGATAC 19229 32 100.0 34 ................................ AGGGCGCACTTACGGACAGGCAGAGCCTGTCCTA 19295 32 100.0 34 ................................ CTGGCTACGCTGACAAAATTAACGGAGCCACCGG 19361 32 100.0 34 ................................ GTTGAAACCAAAGTCAACCCCGAAAGAAGGGTCA 19427 32 100.0 34 ................................ TGTCCTTTTTACCCCCGTCCTGGCAAAAAACAGG 19493 32 100.0 34 ................................ ACGTACTCGGTTGACCGTTTCTTTGCTCGGCGAC 19559 32 100.0 34 ................................ CCCCCCTTGGCAAGCTAGCGGAATGTCTGTGTAG 19625 32 100.0 34 ................................ TTCGTCTGGCTCATGCAACGGGCTTATAAATCCT 19691 32 100.0 34 ................................ ATCTTGGGCGACAGGCGCGCGGCGATTTGCATAT 19757 32 100.0 34 ................................ TAAAGAGGCTCAAAGCGGCTTAAATTTGTCGGGA 19823 32 100.0 33 ................................ CGTGTCCCGTCCGGCATGACGTCTCTGTCGTGC 19888 32 100.0 34 ................................ CTCGTCCGACCTGCCCTTTTTGCGTCCGCTCTTG 19954 32 100.0 34 ................................ TCGCGCACGATAGGACAGGCTCTGCCTGTCCGTA 20020 32 100.0 33 ................................ CCACCGATAGATGCTTTGCGTTGTCCGACCAAT 20085 32 100.0 34 ................................ TTTTACTTTACTTTTACTAGGAGCAGAACCTCGA 20151 32 100.0 34 ................................ ATGATTCACCAAGGGAGCTTTGCAAGCATTATAC 20217 32 100.0 35 ................................ GTCGTCGCGTCCGACGCCGGGCACAAATAGCTTTT 20284 32 100.0 34 ................................ CTTTTGACGCAACCAGCGGGCGTGAAGCGTACAA 20350 32 100.0 34 ................................ TCTTTGGTCTGACCGGTCATTTTGTCTTTGTATC 20416 32 100.0 34 ................................ AATTTTTGTGGTGAGGGCCGGGAATCCGGCCCCC 20482 32 100.0 34 ................................ TTGTTTTCTTGGCGACGTTTTCGCCCGGTGTAAA 20548 32 100.0 35 ................................ CCGTCTTTCCCGATTCGTCGGTTCGCAATCAGGAT 20615 32 100.0 34 ................................ TTGAGCGACTGCCGTCGCCTTTGCGACTTCCATC 20681 32 100.0 34 ................................ GTCAAGTGTCGCGAAGGCCGATAAATACTGACTT 20747 32 100.0 34 ................................ ACCTCCAAAGAGATATAGAACAGGCCCTCGCCGA 20813 32 100.0 34 ................................ ACTGCAACGCTGACAGCGCAAACAAACTCAAGAC 20879 32 100.0 35 ................................ TTCGTCTATGCCCCTGAGCGTCGCAAGGATATGGG 20946 32 100.0 34 ................................ CATCCAAGAAGAAATCCCCGCAAAAGAGCTTGTT 21012 32 100.0 34 ................................ TGTATCTGAAAGACGCGATGACAGATTGCAAAAT 21078 32 100.0 34 ................................ CACGTCTGGTATGATTATGTTACCGGCGTGGCTT 21144 32 100.0 34 ................................ ATTTTTGCCCTGGTTTCATCGTCAACTTTAGGCA 21210 32 100.0 33 ................................ CTCCTCTGTCTTCGTCTTTGCTTGGCGCGACAA 21275 32 100.0 35 ................................ AGCCTCTATTTCCGCTGGGGTACCTCGCAAAAAAT 21342 32 100.0 34 ................................ TTCATCTCGCTTTTTTGACTCCAAAAGCTCTTCT 21408 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 35 32 100.0 34 GTCGCGCCCTACACGGGCGCGCGAATTGAAAC # Left flank : ACCTATGACGTCAACGTGTGCGGAGAAGGAGGAACGCGTCGGCTGAACCACGTTGCAAAACTTTGCGAAAGCTGGGGCCAGCGCGTGCAATTCTCGGTCTTTGAATGCCTGCTCGAACCAGCTCAGTGGGTTCAGCTCAGAAGGGATCTGCTCAATGAAATTGACATGGAACACGACAGCCTAAGGTTTTACATGCTGGGAGCCAACTGGCAGAGACGGGTAGAAGTTATCGGGGCAAAAAAGAGCTACAACCCGCAGGGAAACCTGATTTTATAGCGCGAACCCTAAGCGGTCAGATCGCCGCGGGAGAATAAAATGCCCGCAGGACTGGCGGTTCTAGGGAGAGTGAAGGGATAAAGAGAAAACAGGGCCGCGCTGTCCTGTCTGCCTGCAAACACAAGCAAAAGACCTCCCCGCAGAATGCCAAAAAGGGCAAAAGAAAAGACGGTCGCGGAAAAGAGGCCGGGAAGTAAGCAACGAAGAGGAACGAAGAAATGCGT # Right flank : CCTCGTAATACGTAATTATACTCACGACCCGTTTTTGTCCCCACGGCGTTATGTGTTCGGACTATCTAAGGTCTTTTCGGCTTTCGCCCCGTGTTACTCCGGATATAGGTTTCGGCCCAAAGCCGCGGGATTAGCCACAGCGGGCGGGAGCCGGTGCGAACTGCGCGGACACCTGGCACTTGTCCTCTCTCTATCTTTTTGCGGACGCCCCAGACGGATAGGCCGGTAATGCTGGCCGCGTCTGAAACGCTGATGTAGTCATCGTCCATGTGATCGCTCCTTTGATGTGCCGCCTTACATCAACGCGCTGTAAGGCGTCGCGCCCTACACGGGCGCGCGAATTGAAACCTCGTAATACGTAATTATACTCACGACCCGTTTTGTCGCGCCCTACACGGGCGCGCGAATTGAAACAGTTCTACAAAGCGTTTCGCGGCCAGCGTTGCGCGTCGCGCCCTACACGGGCGCGCGAATTGAAACATGCCCTTTTTGCCTTCAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTACACGGGCGCGCGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 21755-22778 **** Predicted by CRISPRDetect 2.4 *** >NZ_AWWC01000019.1 Jonquetella sp. BV3C21 contig00009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 21755 32 100.0 34 ................................ CTCGTAATACGTAATTATACTCACGACCCGTTTT 21821 32 100.0 34 ................................ AGTTCTACAAAGCGTTTCGCGGCCAGCGTTGCGC 21887 32 100.0 34 ................................ ATGCCCTTTTTGCCTTCAAATCGTAAGAGGACAT 21953 32 100.0 34 ................................ ATCTTGATGGTATAACTCAGTATACCATCTTTCG 22019 32 100.0 34 ................................ TGGTCTGTGAGCGTTAAGACTTGCTGTTGTCTAT 22085 32 100.0 34 ................................ CATAATCCGAGCCACATTACAGAGTACTTTGACC 22151 32 100.0 35 ................................ TACAAAACAGCGGTTACTAGCTCGGCGAAACGTCG 22218 32 100.0 34 ................................ TCCTCTGCTTGACGCGACAAGAAATATGTAAAAG 22284 32 100.0 34 ................................ TTAGGGGAGCTGTTTTTTTGCATTTTTGCGTGGC 22350 32 100.0 33 ................................ AGTTTAACCTCCGCGCAAGTGGAGATGTCCCGT 22415 32 100.0 34 ................................ GAGCGTCGGGACTAATAGCGTCGGTATCCAGTTG 22481 32 100.0 35 ................................ TTTGCTGGGTCGGAACGGCTGAGGAGCGGCGTCAA 22548 32 100.0 34 ................................ ACATCGGCCAACGTCGCTGTGGAGACGCCTGACA 22614 32 100.0 34 ................................ ACAGCGCGAGAAGGTATCAATTGCGGGGCAAGCA 22680 32 100.0 35 ................................ AGTCGTTGTCGCATAGATACGATTATCGGCTAAGG 22747 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 16 32 100.0 34 GTCGCGCCCTACACGGGCGCGCGAATTGAAAC # Left flank : GTCTTTGCTTGGCGCGACAAGTCGCGCCCTACACGGGCGCGCGAATTGAAACAGCCTCTATTTCCGCTGGGGTACCTCGCAAAAAATGTCGCGCCCTACACGGGCGCGCGAATTGAAACTTCATCTCGCTTTTTTGACTCCAAAAGCTCTTCTGTCGCGCCCTACACGGGCGCGCGAATTGAAACCTCGTAATACGTAATTATACTCACGACCCGTTTTTGTCCCCACGGCGTTATGTGTTCGGACTATCTAAGGTCTTTTCGGCTTTCGCCCCGTGTTACTCCGGATATAGGTTTCGGCCCAAAGCCGCGGGATTAGCCACAGCGGGCGGGAGCCGGTGCGAACTGCGCGGACACCTGGCACTTGTCCTCTCTCTATCTTTTTGCGGACGCCCCAGACGGATAGGCCGGTAATGCTGGCCGCGTCTGAAACGCTGATGTAGTCATCGTCCATGTGATCGCTCCTTTGATGTGCCGCCTTACATCAACGCGCTGTAAGGC # Right flank : CCTAGGCGGACGTATTTACGCTATGGTGGCCCTAGGACGTGTCTGAATTGAAACGATTCATCAAAATTTACGTTGTGCTGTCACTGGCATACAAAGAGAAGAGCCCGGGAAGCATTTGCTTCCCGGGCTCTTCGTTTTTCTTTGATTAGCTACTTGATGACGAGTTTGTCCGCTTTGCCCAGATACCCGATGCCGGGGTTGGCAGGGGATTCGACGGACAGAGGCGGAATGATGAACGTTCCGCGGAAGACTGCCCGGCAGGGGAAGTTCCATCCAAATTCGCCTGTTGCGTTGACGGCGTTCAGGATGACCCGATCAAGCCGTTTGTCAATTCGCAGCGATCCAACGTTCCCCGTTGTTCCTTCGCCCGCCTCGGTCAGTTCAAGTCCGGCGGGAAGGAGCACGCTGGTCCTCAGGTTCGCGCTGTTGCTGTTCGCTTTGACGGTCACGCGGAGAATGACTTCCTGTCCGAGTTTGACGTCTTGGGCGTTGATCTTCTC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCTACACGGGCGCGCGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //