Array 1 17618-16589 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTTX01000007.1 Enterococcus faecalis strain CVM N60271F N60271F_S37_L001_R1_001_contig_7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 17617 36 100.0 30 .................................... TATAAGAAGTGTAAGGTTGCTTTATGTAGA 17551 36 100.0 30 .................................... AATTGAGGTGATGGGAAAACATGAGTGATT 17485 36 100.0 30 .................................... AATTTTTATACTGAGGTGTCGGTGTATGGA 17419 36 100.0 30 .................................... TAAAACCACTGTCTTTCCACTCTAAATACT 17353 36 100.0 30 .................................... TCACCGTGGCTATGATAGTTTTCCTTGTCG 17287 36 100.0 32 .................................... CGAAAGCACAAGCTTTACTTTCGTTGGCATAA 17219 36 100.0 30 .................................... TGGACGTAGGTATCACGTTTGGTGGTCCGT 17153 36 100.0 31 .................................... CTGAATTTCTTCTAATGCTTTATTAATATCC 17086 36 100.0 30 .................................... TTGGAGCTCCAACATGGGACGGTCGAGAAT 17020 36 100.0 30 .................................... GTAACCCCTTTGTTTCCTGCTGTGCTATAA 16954 36 100.0 30 .................................... TCTTACCTGCTTGTTCTATTGCGTAACTGA 16888 36 100.0 30 .................................... TCTTACCTGCTTGTTCTATTGCGTAACTGA 16822 36 100.0 30 .................................... ACACCAGTGGCTTGACTGATGAATCCGCTA 16756 36 100.0 30 .................................... AAAACATAGCCATCTGCTACACGAACTGAA 16690 36 100.0 30 .................................... CGAATCAATTCGATATCACTTGTTAATGAA 16624 36 97.2 0 ..........................C......... | ========== ====== ====== ====== ==================================== ================================ ================== 16 36 99.8 30 GTTTTTGTACTCTCAATAATTTCTTATCAGTAAAAC # Left flank : ATTTATTATCTCTTTCAGCAGCTAAAGAAATTGGCTCAAGAAACAAAGCAGTTGAAGTTTTTTATTTTTAGTAATAGAAGCTTGCCTTTACCGTATACGGAGGAAGATGTTGAGAAAACGATTTTGTTATATGATAAGTATCAGCAGTTGCCAGTTTTTGATGTTTTTCGTCAAAGTATTGAGCGACATTATCCAGATCAACTCTCTTGGACAAATCAACAACTAATTGATGCTTTTTATCGAGTCTGTCATTTTGTTGGTGATCAGTATACAAAAAATTATCTTTTACCTAAAGATATGATATTATTAAAATTGTTGAAGGAATTGTTAGACGACAATAGTGAGTGTGTCGAGACGTCGATGGAAAAGCTCACTGTATTGGAAGAACAATATTTTCGCGAACGGTTATTGCGGAAAGAGTGAGTCTGGAATTTTAACCGCGTAAAGTTATATTTTTTATCAAAAGGATTATTAATGAGATTTCAAATTTTAAATTTGAG # Right flank : AATAAGGAAGTAGGTTGGATGTACAAACTCGCTTTTATACCCCAAATAATTTTCAAAAAAGCCATCCCCACTAAATGTTTAAATATAGTCATCTTTCTAGCATAATTATTTGTATCTGAAGCAACAGCCAAATTGGCTTCTTCAGATACTTTTTGTTATTTAATTTAAGAGTTTTCTCAGTTGTGCCAACAAATTGATAACTTATAATTTTCAAGTCCTACATATAATGGTAAAATAGAATAGATTGAAATTAATTGGAGGAATAATGAATCGATGAAAAAAAGATTGCTATTATTTATTGGTTTGGCAAGTATACTTACTTTGACAGGATGTGCAAAATGGATTGATCGTGGTGAATCCATCACAGCGGTAGGCTCATCAGCTTTACAACCATTAGTAGAGACAGCGAGTGAGGAATATCAAAGCCAAAATCCGGGAAGATTTATTAATGTCCAAGGTGGCGGAAGCGGAACAGGTCTGAGTCAAGTCCAATCTGGCGC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAATAATTTCTTATCAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.60,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 13234-13798 **** Predicted by CRISPRDetect 2.4 *** >NZ_PTTX01000103.1 Enterococcus faecalis strain CVM N60271F N60271F_S37_L001_R1_001_contig_103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 13234 37 97.3 29 ....................................G AATCTACAGATAAGTTCTACACCGTCAAT 13300 37 100.0 29 ..................................... CGCTTGGGAAATTGGATGCAAATATTATT 13366 37 94.6 29 ....................G...............T TCTTTATGCAATCGAACAGTGCTTCGATT 13432 37 100.0 29 ..................................... TAATTTTACAGAAAACAATCGTATAGAAA 13498 37 97.3 29 .......................G............. AGAAGCAAAAGAGAACATGATTGCCGTTT 13564 37 97.3 29 ..........T.......................... TTTATATCCAATCACAGTAGCAATACCTT 13630 37 94.6 29 ....................G...............T GATCGTGGATTTTCTGACAGGTTGGATCA 13696 37 94.6 29 .............A..............G........ TTACTTGTTAAGGCTTCAATTATCAATTC 13762 37 97.3 0 ....................G................ | ========== ====== ====== ====== ===================================== ============================= ================== 9 37 97.0 29 GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA # Left flank : TGTATATCCTTATCAAGTAGTAAATGCTTCTTTTGACTTTCAAGAGGGACGAACAACAGAAGGTGGAGAAATGACACACATGATTGGCTTTGCCACTTCGCAAGAAAATACCTATGAAGATTTGGAGCAACTAAGCGTACCTGCTCATACATGGGCGGTTTTTCCAAATGAAGGTCCTTTCCCTCAAACTTTACAAGAAACCTGGGCAAGGATATTCTCTGAATGGTTGCCTTCATCTGGTTACCAAGTCGTTGCAGCACCAGAAATTTCGTTTACGCAATATCAAGGACCAGCAGAAGCTAAGTATAGTGAAATCTGGCTCGCTGTTACAGCTACTAAATAAAGAAAACCCACCATTGAAAAATGGTGGGTTTTTCCGCCAAGAAGAAGAAAGTTTGGTATAATAAACGTGAAGAAAAAATTCAGACCTTCTAAACTGAAATCTAGCTATGGATAAGTGATGCGAATACGGAATCATGGAGAAAAAATAATTCTCCGAG # Right flank : AAACTTTTTTGATTTGGCTTTTTCTCCCCTGTTTTATAGTCATGTTGTTAAAAAACAAACTATCACCTCAAGCAATCCGTAATTTTCATCACAAGATTAGAATTTTTATCATCAAAGACGAGCTGCTTCAATTTTTGGGAACTAATCAAGTGATAAGTCAAAATGTTGATAGATTGAGATTAGTTCTTCCTTTTTTTAGGAAGGGCTTTTTTTATTGATAGAAGAAAGGGAAGAAATCTTGGGAGCACCTAAAAAAATTGTGAGAAATGCTTCTGTATTGTTTGGTTTCTGCCTCAGAAAGTTGTATACTTAGATTGGAATTATTCTATATTACATGCATTTTCACACTTTTTGGAAAAGTTCACTTGAATTTTCTTTTAGTTTCGTAGATAAAAGGAGTCATCGCTAATGGAAATGAACAATTCAGGTAAGCTTGTTTCTTTGTGTGGAGGCAAATCAGGGAGGAAATAATATGTTTGATATTGTAACATTGGCGAGAA # Questionable array : NO Score: 5.52 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACA # Alternate repeat : GTTTTAGAGTCATGTTGTTTGGAATGGTACCAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGTCATGTTGTTTAGAATGGTACCAAAACT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //