Array 1 66811-67931 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFMG01000002.1 Klebsiella pneumoniae strain 3DZ2-7B scaffold_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 66811 29 93.1 32 ............TG............... TAACTTTACCCCGGATCCTGATGAACCTGTAC 66872 29 93.1 32 ............TG............... TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 66933 29 100.0 32 ............................. AGGTATTTGACCTCATCCAGAAAGGCACAGAC 66994 29 100.0 32 ............................. GCACCCTCACGGATACCTTTTGCACAGTGTTA 67055 29 93.1 32 ............TG............... TTACCAATGGGGAAAAATCTTCATTTGTAAAT 67116 29 96.6 25 .....T....................... AACATCAGTGGAAATCCACTGCGGC Deletion [67170] 67170 29 96.6 32 ......T...................... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 67231 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 67292 29 100.0 32 ............................. AACAATTTGAAGTTTCTGCGCCAGGTCGTTTC 67353 29 100.0 32 ............................. AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 67414 29 93.1 32 ............TG............... TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 67475 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [67486] 67537 29 89.7 32 .............T.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT C [67542] 67599 29 100.0 32 ............................. TGAGGCTGCTGACGGAGAATTGGGACCTGTTC C [67604] 67661 29 96.6 32 ..............C.............. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 67722 29 93.1 31 .............G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 67782 29 93.1 32 ...C......................T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 67843 29 96.6 32 .............T............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 67904 28 86.2 0 ..........A.....T.....-.....A | ========== ====== ====== ====== ============================= ================================ ================== 19 29 95.1 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : ACATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAA # Questionable array : NO Score: 5.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.38, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 27560-30209 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFMG01000010.1 Klebsiella pneumoniae strain 3DZ2-7B scaffold_9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 27560 29 100.0 32 ............................. GAGCAGGCACCCGCCGCAACGACGAAGAGCGC 27621 29 100.0 32 ............................. AAATCAGCCAGCACCACGATTCTGGGAAATTT 27682 29 100.0 32 ............................. ACAGGCTTACCCGTATTGAGACGGTTGCTGAA 27743 29 100.0 33 ............................. GAAACCCCATCAGATGACCCTCCCCATGTTGGC 27805 29 100.0 32 ............................. TTGCCTGGTCTGCTTGGTGATGATCCGTGGTA 27866 29 100.0 32 ............................. TACAGAACGACTGAGGCGGCGTGTATTGCATA 27927 29 100.0 32 ............................. GATCTTAACTCTATTGCCAATGGCGCAATTCA 27988 29 100.0 32 ............................. GGCGATGCGCGCTCTGCTGGCTATCGGTAAAA 28049 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 28110 29 100.0 32 ............................. GGGCTGCCGCACGCCTGGGACGAGTCGAGCCC 28171 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 28232 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 28293 29 100.0 32 ............................. CCCCCGCGCACATGCTTAAACGCGCTATCACG 28354 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 28415 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 28476 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 28537 29 100.0 32 ............................. TCCGCACAGTCAAACGCTCCAGACACCAACCC 28598 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 28659 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTCCAGGTAATACGT 28720 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 28781 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 28842 29 100.0 32 ............................. GGACCCCGAGCGACCCGGTCACCCTCCGACCT 28903 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 28964 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 29025 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 29086 29 100.0 32 ............................. CCGATTGTCTGGCGGTCGAGCGCCATTTGCTC 29147 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 29208 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 29269 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 29330 29 100.0 32 ............................. CCGCTTTAACCCGCTCAGGCAGATCCGGGTGA 29391 29 100.0 32 ............................. CCCTCCGCTTTCAGGGTGTGGCTGATATCACC 29452 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 29513 29 96.6 32 .............A............... TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 29574 29 100.0 32 ............................. ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 29635 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 29696 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 29757 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 29818 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 29879 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 29940 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 30001 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 30062 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 30123 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 30181 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================= ================== 44 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCCTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //