Array 1 337-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPNG01000029.1 Lactobacillus bombicola strain H70-3 scaffold30, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 336 29 100.0 34 ............................. CATGTGGTGACCAGTTATTAAATGACGGTTTACT 273 29 100.0 32 ............................. ACAGGTAGGGCATACGAGTTGATGTACATACA G [249] 211 29 96.6 32 ............................T ATCTTTGTGGTTAATCATCGTTGTGTATCGGT 150 29 100.0 32 ............................. AGTGCTCTTGGTCAATTTGGCGGCAATGACCA 89 29 96.6 32 ............................T TTAATAGCTAATGACCAAACAGGTAAAGCTTT 28 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================== ================== 6 29 98.3 33 GTGTTCCCCACGTATGTGGGGGTGATCCC # Left flank : | # Right flank : C # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTATGTGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-1.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 26817-25527 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPNG01000007.1 Lactobacillus bombicola strain H70-3 scaffold7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 26816 36 100.0 30 .................................... TAATGCAACTAAGTAATGGTTTGGATTACT 26750 36 100.0 30 .................................... CTAGCGTACGCTTAAATTCGTCATCAACTT 26684 36 100.0 30 .................................... TCAGAGGTGAAATTGATACGCAAAAGATTT 26618 36 100.0 30 .................................... TAAAAAAAATCGTAAGAGATTGCTACATCG 26552 36 100.0 30 .................................... TAATGCAACTAAGTAATGGTTTGGATTACT 26486 36 100.0 30 .................................... ATTCCATTCCAGAAGTTATTCCAAGCATCG 26420 36 100.0 30 .................................... ATTATTTCTCTCCTTTCTTAACCTCCTGCT 26354 36 100.0 30 .................................... AGAGAAGTAAATAAGAATAATAAAAAACAT 26288 36 100.0 30 .................................... ATTCCATTCCAGAAGTTATTCCAAGCATTT 26222 36 100.0 30 .................................... TCAGAGGTGAAATTGATACGCAAAAGATTT 26156 36 100.0 30 .................................... TCAGAGGTGAAATTGATACGCAAAAGATTT 26090 36 100.0 30 .................................... TAAAAAAAATCGTAAGAGATTGCTACAACG 26024 36 100.0 30 .................................... ATTATTTCTCTCCTTTCTTAACCTCCTTTT 25958 36 100.0 30 .................................... TCAGAGGTGAAATTGATACGCAAAACTTTT 25892 36 100.0 30 .................................... TCAGAGGTGAAATTGATACGCAAAAGATTT 25826 36 100.0 30 .................................... GACCTAATTTGGTCATTAGACCAGTGTTCA 25760 36 100.0 30 .................................... TTTATTACACAAAATTACAGATTATCTGTC 25694 36 100.0 30 .................................... TTAGGAGGCTTTTTAGATTTCCAGCCTTTA 25628 36 100.0 30 .................................... AGTAACTTATAGTAAGAAAAAGTCGAAGGG 25562 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 100.0 30 GTTTTAGATGGTTGTTAGATCAATGATGATTAGAAC # Left flank : AGTGGCGACATAATTAAAAAATATATGTCAAATATCTTGAATAGTTATATTGCTAATATTAATGAAAATAATCGAAACCGAATTTTTACTGCATTACAAAATTTAGAAGTAGCTATTGATGATTCACTAATGCTGGAAGACTTACCATTAATAATTAAGTTTGATGATGATTTGAAAAAACTATTGAAATTTTTTGATTTACATATAGATTATGAAATTACTAAGAGTCCCTATGCTATAATAGAAATGATTTTTAAAATTTATCAATCATGTAACTTGAAATCGATCCCTGTGATGTGTAATTCAACACACTATTTAGAACAGGATCAATTGCTAGAGTTATCAAGTTTAGCCAAGCAAATGAAGATGATGGTAGTTCTTTTAGAGTTTGCTTCCCCAGATTTATTGGTTGTACCTGAGGGTGTGCAATTTTATTATATTGATCAGGATCTAATCGATTTGTACTGACATCTATATTAAAACTTTATTATAAAATATCG # Right flank : TTGCAATACTTTGATTGTAGTTTAAATAACGTTTTAAATGGTAGTCAGAGCATATTAAAAGAACTCAATTCGCAATGACGGAATTGAGTTTTTTTAACTGATTTTATTTACCTAAAAACTGATTACTTTCAACTTCACGGATAAAGTCGGCCAGGTGCTTGTAATAAACATCTGGATTATCAACCATGTGGTGGTGCCCACCATCTGGCGTAGTTACAAGTTGGGCGTTAGGAATTTCTTTTTGCATAATTTTGGCTGTTGCAATTGGCATTGTTTCATTCTCACCAAAAGTAAGTAAAGTTGGTACTTTAATATTTTTTAATTGCTTTCTAAAGTGCCAGTCTTTCAATTTTCCAGTAATGACAAATTCATTATCGCCTTGAAAAGCATTATAAACAGCACTACCGCCAATATCTTGTAAATGGTAAAGTTTTGATGGCTGCCGCCGATCAACAAAATTAATATTAAGAATATTAACATCTTCTTGGTAACGTTGATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGGTTGTTAGATCAATGATGATTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGATGATTGTTAGATCAATGATGATTAGAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.40,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 394-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPNG01000012.1 Lactobacillus bombicola strain H70-3 scaffold12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 393 29 100.0 32 ............................. CGTAGTGCCCGTGGTGCTAATGAGTCCAACGA 332 29 96.6 32 ............................T TGAACACCATCAAAATCATAGATGATATCTAG 271 29 96.6 32 ............................T TACTGGAGCAAGGCTGAGTTAATGTTGACTCA 210 29 96.6 32 ............................T AAAAAGATTGGAGGACAAAGGTAAAGAAATGA 149 29 100.0 32 ............................. AAAGTATCGAACAAATTAAAACTAATAATCCT 88 29 100.0 32 ............................. TACCTGTGGAGTCAAGCCGATGGCTGGAATTT 27 27 93.1 0 ...........................-- | ========== ====== ====== ====== ============================= ================================ ================== 7 29 97.6 32 GTGTTCCCCACGTATGTGGGGGTGATCCC # Left flank : GATAAAAATCAAATTATTTCTATTGGAGCAGTTAAAAAAATTAATGATAAAAAGTATGATAGTTTTTATAGATTAATTAAAGTTGATACTGCGGTGCCAAAGACGATAACTGAATTAACCGACATAACATTAGAATTATTGAAAAAAGAGGGGGTTACTTTAGATAGAGCTCTTAGAGAACTAACTGAGTTTATTAGTTCTGCCACGATTATTGGCTATAATTTACAGTTTGATTTATCCTTTCTCATGTCCGGCTATAGATCTGTAAATTTAAAAGAACCGGATAATGAAACTTTAGATTTATTATCTGTAGTTAAAAAAGCAGAAAAATTTATTGATAATTATCGTTTGGCAACTATTTTAGATTTTTATAATATTAAGAATTCCAAGCCACATAATGCACTATCTGATGCTAAGGCTACGTTGCAGTTGTTATATAAACTAATGGAAAATGGCAATATCAAAGTTTAAAAATAAGGGTATAATAAGGATCTTTTACT # Right flank : C # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTATGTGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //