Array 1 6141289-6138672 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048209.1 Paenibacillus lycopersici strain 12200R-189 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 6141288 32 100.0 35 ................................ CGAAATATACTTCCATTCCGGCTGTTGCTTTCGGA 6141221 32 100.0 33 ................................ ATTTAGCATGTCGTTGTTGAAGCGTTCGGTTTC 6141156 32 100.0 34 ................................ AAGCACCAGATTCGCCTCACGGCTCCACGTACAT 6141090 32 100.0 34 ................................ CGTATTCAGCGAATGTTCATCCGACTGACTTCAA 6141024 32 100.0 34 ................................ TTTACCGCACGCCGATTCCGTTGATAGCGCCGAT 6140958 32 100.0 33 ................................ ATATACGCCATCGCCTACAGTCCATTCCGTCGA 6140893 32 100.0 34 ................................ TCAACACTCCTGATCGGCTGCACTACTTCTATGC 6140827 32 100.0 33 ................................ TGCTGTTGGCTGCGGCAGTGTAGGAACGCCTGC 6140762 32 100.0 34 ................................ CGTTTTCCTTGAGCCGTTTCCGCGCTTCCGCGAC 6140696 32 100.0 36 ................................ GTAACGACATCTCCGCCACAATGATCGCATTTAATC 6140628 32 100.0 35 ................................ CAGATACTCCAGCCAATCCATTTGCGTAAATTTGT 6140561 32 100.0 34 ................................ CGTCGAGCCATACTGATTTGGGTTAACGAACGAC 6140495 32 100.0 37 ................................ ATATGAAGGGAGATCGTCGCGGGAAGCCGCAATAAAC 6140426 32 100.0 34 ................................ CGTCGTAATCCATCAGGATTTCTTTTCGTTGCTT 6140360 32 100.0 36 ................................ TTCGGTATCGCTGACATACACGACATAAGCGCCATC 6140292 32 100.0 34 ................................ AAGAACTATTGTCGAAAACGCTCCAGGACAACGG 6140226 32 100.0 36 ................................ TCCGTCACCTTGCCGGTGTCCATCAGCACACTCACC 6140158 32 100.0 33 ................................ ATCGTTGCCATTGCCAAACCTGTTTCTGGCGAA 6140093 32 100.0 34 ................................ CCTGTGCCGATTTCGTAATAAATCTTTCTCCCAA 6140027 32 100.0 33 ................................ CGTCCGATAGGTTACGCTTAATCTTCGCCTTTA 6139962 32 100.0 36 ................................ TGTAACAAAGTCGCTGCCGTTGCTGGAATGCGTTCC 6139894 32 100.0 34 ................................ GGCACATCGACCATTATCCATCAATCCCTTTCAT 6139828 32 100.0 34 ................................ AACATAGTTTGGAAGATTGACAGATGCCTTGCTC 6139762 32 100.0 34 ................................ GCCTGCGTATCTGTTTCCGACGATCCCTGTCTGA 6139696 32 100.0 34 ................................ TCGACGATCAGAGATACATTTGTGCCAGGCAACA 6139630 32 100.0 34 ................................ GATCATTGTTGCAATTTCGCGCATTATCGTCATT 6139564 32 100.0 34 ................................ CGCCCGAACCTTTTTTAAGCATAACGGAAATGTC 6139498 32 100.0 36 ................................ TTCGAGTAACATCATGTCTGGTTGTTCAACTTCGCC 6139430 32 100.0 35 ................................ ACCATCGGAGAGTCCGTCGATCAACGTCCCGTTGA 6139363 32 100.0 35 ................................ CCGATTCGAATGCCGAAGATCTGGCCGAGGATACC 6139296 32 100.0 34 ................................ GACCGCAGCGACCGCATCGTCTTGTCCGTTTTTC 6139230 32 100.0 33 ................................ TCCGATCCATTAGGGGGAATGGGTATGAGTTGG 6139165 32 100.0 35 ................................ TTGTGTGTGATGAACTTCGACGGGCTCATTTTGAT 6139098 32 100.0 33 ................................ CTTACGAAGACAGTCAATAACGCGGCCGTCGAC 6139033 32 100.0 33 ................................ ACCGCATTCGTATTAAAGTTCCATGCATCCAAA 6138968 32 100.0 34 ................................ ACATCGTTAAACGGTGAATATGGCAATGATACCG 6138902 32 100.0 34 ................................ TACGGGACGCAGAACGCATGGGCATCAGCGCATC 6138836 32 100.0 33 ................................ CAGCCGCCCCGGCCGCCAGTGAAGCTACCGGTC 6138771 32 96.9 34 ......................A......... TCCTAGCCATGGGAAATTCCGTCTTTCGTGAAAT T [6138747] 6138704 32 81.2 0 .C................A....A...C..TG | A [6138690] ========== ====== ====== ====== ================================ ===================================== ================== 40 32 99.5 34 GTCGCATCCCGTGCGGATGCGTGGATTGAAAT # Left flank : TCCACCATTCCTGTGGAAGTAGGTGAATATCCTGCTAGTATTGGTTACTTATGATGTGAATACAACTAGCAATACCGGACAGCGAAGACTTCGCCAGGTATCTAAAATATGCCAGAATGTTGGTCAGCGCGTACAAAATTCGGTTTTCGAATGCGTAGTCGATGCAGCACAGTTAGCACAATTGAAGTTGAAATTACTTGAAGTTATTGACGTTCATCAGGATAGTCTACGGTTCTACCAGTTGGGCAACAATTACAAAAACAAAGTGGAGCATGTAGGAGCGAAAGCTTCGATTGATTTAGAAGGACCATTGATTCTATAGTGCGAAACGAGGTGCGAATGTGAAGCTCACATGGATTTACAGGGAGATTCGCACCAAGAAACTAGCAGGTTATCAGTTAAAAAGTGATATTCGAACTGAAAACTAATTATTTCTTTAATATAATGAAACTTTCAACCAAAATATTGTTTGAAACAATCGATTTTGGTTGAAAATCGCT # Right flank : ACTACCAACGGGCCAACTAAGATCGAGGGTCAGATTGCACCCCGCACTAGCCGCCTCAAGCGCTTCCAAAACCTGCAAGATTCCGCCAAAGACTATCTTTCCGGGCGAGCTGGTATATAATCGGTTTTGAAGCGATTACATGATCTCATCCGAGGAGGAATAAACGGTATGATTAATGTCAAACTGGGTATGCGGATCCCGCCCAAAATCGGGGCGGAAGGGATGGAATTCACGGCAAAGCTGGCCAAGCAGGCCGGTCTTGACGTCCTGGATTTGCCGCGTCTGACGCCGGAATGGAAGGCGGCTTGCGAAGCGGAAGGCTTAGGGTTCGGTACCATCGACGCGCATTACACGGGACAACTGCTGAGCCGGGACGATGCGCGCCGCGCGAACGCGGTGGAATCGGCGAAGAAGGAAATTTCGGATATCGCGGCGCTGGGCGGCCGCGTGCTGTTCATGTGCCTCGTGCCTGAAGATCATACGCTGCCGCGCAAGGAAGG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCGTGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCCCGTGTGGATGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.50,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 6152279-6149732 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048209.1 Paenibacillus lycopersici strain 12200R-189 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 6152278 32 100.0 33 ................................ TCGTTTTGCCGCCCACTCTTCCAGGGCGTCCAA 6152213 32 100.0 36 ................................ CTCTCGACAGCCGGGACAGTAGTAAGCGCGTGGACC 6152145 32 100.0 34 ................................ TTCGAGTGCGTAGTTATTGTCACCGGATATTTGT 6152079 32 100.0 35 ................................ CATCGGATTTCACATACCTAATATACTGATCGTAA 6152012 32 100.0 35 ................................ ACCGTCGTCATCGATAAACGAGATCACAGGTTCAA 6151945 32 100.0 34 ................................ CTGCTCATACAATCCGCGAAGCCGCTCGATTTCC 6151879 32 100.0 34 ................................ TCTGTTATGGACGTCTTATTTCCTCGCTTCTGCG 6151813 32 100.0 34 ................................ TCCATCTCATCCGCGATCATATCCGCCGCTTTAA 6151747 32 100.0 34 ................................ CTACTAATTTCCACGGACTCTGTCCCGCGTAAAC 6151681 32 100.0 33 ................................ TCATGCACGCTCCCTATATCGGCGTTTGCCATA 6151616 32 100.0 34 ................................ ATCGTTGCCATTGCCAAACCTGTTTCTGGCGAAA 6151550 32 100.0 34 ................................ CTCCTAGTCCGCCTCAAAATGTTCATGTTGTGAA 6151484 32 100.0 33 ................................ TATGAACCTGATTACTTCTTCGGGACTTTGAAC 6151419 32 100.0 34 ................................ CCCATGGTATCGTCTGGTTAGCGGTAGACGGCGT 6151353 32 100.0 34 ................................ GCTGTAAACGACATTTAATGTAACGTTACCGAGT 6151287 32 100.0 34 ................................ GGATATTTTGCCCTTGATTGCCTTGCCGGATCGA 6151221 32 100.0 34 ................................ CGTAAAACCCATCGCCAGGTATGCTCAACCTAAT 6151155 32 100.0 35 ................................ CGCCCCTTCCAGTCCTGCGGTCAGCCGCGATAGAT 6151088 32 100.0 36 ................................ TTTAATCGGGCGGCGGACAATGATGCAAGACTGACA 6151020 32 100.0 34 ................................ TTGGCTCCGCGTATCCTTGTAACGCCCAATGCCC 6150954 32 100.0 34 ................................ TATGCTCTCTGATCTGAACCCAGCCATGCCAGCG 6150888 32 100.0 35 ................................ CCCATCGACCCGATCCTCTTGAATTTGGTTTCAGA 6150821 32 100.0 34 ................................ CGCCACCCGCGCGAAATACTCCCCGAACTTGATC 6150755 32 100.0 34 ................................ CTCCTGATCACGGGCAAGCGGTCATGAAGATCGG 6150689 32 100.0 34 ................................ TCGGACAAATCACTGATCGTGCGTGTTTCGATCG 6150623 32 100.0 35 ................................ GATTTGCTTGAGGATTTGCAGGATATGGAGTTGAT 6150556 32 100.0 35 ................................ TATAATACGAAGTATATGCAGAAGGGAGTTAATGC 6150489 32 100.0 33 ................................ TTTACTCTCGGTTCGTGCCGCTCTATGTGCCGC 6150424 32 100.0 34 ................................ GTCGATACCCGCAAAATCGATTTGGTTGCGATCC 6150358 32 100.0 34 ................................ ATGGCAATATGGCCGGATGATGCAAATGATCGAA 6150292 32 100.0 34 ................................ ATGCCAACGAGGCCGAGCAGCGTTGGTGCGTCAT 6150226 32 100.0 34 ................................ TGCGATAATCAAAAAGAACAAAATACCGGAAGAC 6150160 32 100.0 34 ................................ CAATCAGTGCCCAGCGTGGCATCGAATTTATGCA 6150094 32 100.0 35 ................................ GGTTATCCGATCTCGTTATTTCGAATCGAGGAACG 6150027 32 100.0 35 ................................ TTGTTACTCTTCCTGCTCCTCCATCCAATCGCAAA 6149960 32 100.0 33 ................................ TTGAAGAACGCGTCAGAAGCGTACCGGGACACC 6149895 32 96.9 33 .C.............................. CGTCTGACCATACCCATATGACGTGACATGCCA 6149830 32 93.8 34 ............A..............T.... GTATACAGGGCGATCAATAGATGTGACGCCAGAG T [6149819] 6149763 32 84.4 0 ............A..A.......C..A....A | ========== ====== ====== ====== ================================ ==================================== ================== 39 32 99.4 34 GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Left flank : TAACGAATCCTGTGTCCTTTTGCCAACCCAAACCTACCGATTTCCACCAAATAACGGATTCTGTGTCCGTTGCCCATGAAGACGATCTAGCCGGCATGGGCAATGTCGATACATCGAGTGCTTTCTCGACAGCCAGGCAGCCCGGGACTTGTCCCGGGCTGTTTTTGGCATGCCGCTCGGTGAATTGCGGGCGCAGCGAATGATCTGAATATAGTAAAATATTGGTACTTATTATATGATTTATGAGAGATAGGATAAAGGGAGGATGAAGTGGATCACGTAGTTGGACGGGGAGCGAATCAATAGTAGGCAATTCTTAATGCGAACTTGTGGTGCGAATGTCAAGCTCACATGATATTCTGGGGGCATTCGCACCTGTTTAAAGGTATGCATGAGTGGGAAAATGGCCTTATTTTGTTGAATCAGTACTAGATTTACTTATTTATGAAATATTCAATCAATAAAATGATTGGAAAAGTCGGATTCTATTGAAAATCGCT # Right flank : TCTCGACATCGACAGCCAGATGAATCACCGTTACTAGTCGCATCCTATGCGGATATGGATATAACGTTGCTAGAACAGATGGGCAGAAAGCCGAGTGTATGAGCATTCATTACGAACATGATTAGCATCACTCATTCAATTTGAGATGGGAGTGTCTGAAAATGAACTATATCGCCCACATTCGTGAACGGGATAAACAAATTCAGACTGTAGAAGAACACCTGCTTGGCGTTAAATGTATAGCAGAACAATTCGGCAAGAAAATGGGTGTCAAACATATTGCGGGTCTTGCTGGCATGTTGCACGACATGGGCAAGTATACCATCGAGTTCAGGGAATACATTTGGGCTGCTGTTCACGATCCGGGGTCATCGCCGAAGCGTGGAAGCGTCGACCATTCAACAGCCGGCGGTAAGTTGTTATTCGAATTATTCCATCAAGGCACGCCTTCAAGATACGAGTGGATGATAGCGGAAGTAGTCGGAAACGCAATTATATCG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCTACGCGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.20,-9.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //