Array 1 195912-190608 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIRQ01000001.1 Fusobacterium nucleatum subsp. polymorphum strain KCOM 1330 (=ChDC F330) F330_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 195911 37 100.0 34 ..................................... GTTACTCCATTCTTTTTTAAGATCTTCTGGTAAT 195840 37 100.0 35 ..................................... GATAATGTCATCTTGGTGATTCTTTACTATGTCCT 195768 37 100.0 37 ..................................... AAGATTACTGGTTATTTAAGAAGAGAAATACATTAAA 195694 37 100.0 37 ..................................... TTTAAGAGATCTATCAAGAACTATTTTATCAGCAGAA 195620 37 100.0 36 ..................................... AGCACTATATAAAAGTAGGCTGGTTTTGCTGTTCCA 195547 37 100.0 37 ..................................... TCCCATTTTGTATACCTCCTAAAATTTATATTATTGA 195473 37 100.0 38 ..................................... CAAGCTTTATAGTTTCCCCGTTACCGTCAAGTTTAGGA 195398 37 100.0 42 ..................................... AATTCAAATGGTGATTTGTTATTCATCTTTATTCTTGCTTGA 195319 37 100.0 39 ..................................... GGATAGTTATTTTCAAAATAATCAGAAGGGTTTATATAA 195243 37 100.0 36 ..................................... TCATTAATCATTTCTTTAGTAAATGTCCCAGTGACT 195170 37 100.0 35 ..................................... TTTCTCTCAAAGAAATAAAGCATATAAGGTTATTA 195098 37 100.0 40 ..................................... AAATCTATTGACACGAAACCATTATCATAGTCATGTCTTA 195021 37 100.0 39 ..................................... TAAACAATCTTGGTGGTATAAGTTTCCATCTTCCATATA 194945 37 100.0 39 ..................................... ACACCTAAACACCCTAAAATATAAATAAATTCTCTCATA 194869 37 100.0 40 ..................................... CCAAGTAAAAATTATCTTTATCATTGGTTTCAGCGTCAAG 194792 37 100.0 37 ..................................... GTTGATAGAACTGGTGGGGAATCAGATGTATTTTTAG 194718 37 100.0 38 ..................................... TTTGTCATGTAATTTTCAAGTGCCATCATCGTTTGTTG 194643 37 100.0 40 ..................................... TCATTTTTTACTTCATCAAAAAACTCTTTATATTTACTAC 194566 37 100.0 40 ..................................... CATTAGAAGCAACATAATTTTCTATAACCTCAGCTGCATA 194489 37 100.0 37 ..................................... TAGATATGGCTCGTATCGACTTTAAAGCTACATCTGT 194415 37 100.0 41 ..................................... CTTCTGATACAGTACCGTAATAATATTCAGCATCGTCATCT 194337 37 100.0 38 ..................................... TCCATAAAGAGTTATAATCTTTGGTCTTTTATCCGTTT 194262 37 100.0 38 ..................................... TTAACCTTATCTTTAAGAACGCTTGATACAAATTCTAC 194187 37 100.0 44 ..................................... TCAATAGCTAAAGAAGCTACTTTTGCAACTTTTATTGATGGAGA 194106 37 100.0 42 ..................................... ATTATCTGAAGATAAGATATCTAAGCACACAGTTGGATACGG 194027 37 100.0 38 ..................................... ATTTTGCTATCTATTTAAAGGAAATAAAAACTCTTTCT 193952 37 100.0 38 ..................................... AAGAAGGTAAATTTGCTATCTAACAAAATTTTAGGTAT 193877 37 100.0 36 ..................................... TGTTCCAAATCGACATTTATTCTTAGAATATTATCA 193804 37 100.0 34 ..................................... GTCAGCACCAGAAAGATCATAGTCTATATACTCT 193733 37 100.0 39 ..................................... TTACCTTCAGGAGCTTCTATTTGAAACTTATTATTTAAA 193657 37 100.0 34 ..................................... TAAATTTACCAAGTAATCCATATTTACTATATAA 193586 37 100.0 38 ..................................... CAAGAGCTTCTTGTCCTACATCCTCTGTTTCTATTTCT 193511 37 100.0 39 ..................................... TAGTTTATTTCTTCTACTGTTTTTAATGGAAATTCCATA 193435 37 100.0 40 ..................................... TGTTATGAGTTATATGGTAGATGGAGAACCTTATCTTTTA 193358 37 100.0 39 ..................................... AGAGGAATATTTGGATAATATGAACGTTAAAGATATAAA 193282 37 100.0 37 ..................................... TTTATGTTATCCTTATCTAAACCTTCAATAAGTTTAT 193208 37 100.0 36 ..................................... CTTGTAAAGTTATTCCATCTATTTCAGTATAGGCAT 193135 37 100.0 37 ..................................... TAATTGAGTTATATTTATCACTATTCTCTTCTGCAAA 193061 37 100.0 37 ..................................... CAGATAACTCAATAACTTGGTATCCTTTTTCTTGCAA 192987 37 100.0 42 ..................................... TATGAACTCAATATCTGCGTTCCAAGGGGCTACAAAGTATTT 192908 37 100.0 36 ..................................... TAAAATCTGATACCATTCCATTGCATATATTTTTTA 192835 37 100.0 38 ..................................... TGAAGTTGAAATTCTAGATATTAAAGAACTTTCTCAAA 192760 37 100.0 38 ..................................... TGCTATAATATCTGCCTTTCTTCCTTCCATTTTTCTTA 192685 37 100.0 42 ..................................... TCTTCAATATCTTCTTCCAAAGACTTTCTAAGCTCTTCCTTA 192606 37 100.0 38 ..................................... CGAAGTAATTGGATATAAAAGAGAATTTGACGGAAAAA 192531 37 100.0 35 ..................................... TTTCTTCTACATTAAGTAAAGAAGCTTTAAGTTCT 192459 37 100.0 41 ..................................... TCAAATGCTGATGAATATTGGATATTAGGAACTCCATTATA 192381 37 100.0 38 ..................................... AGAAGAACTAAAAGCTGAGGACCCAGAAGAGTTAGAAA 192306 37 100.0 39 ..................................... ATTCAAATATAATCCTTTCATAATTTTTAATCTTTTTCT 192230 37 100.0 35 ..................................... ATATAGACAAAATATTAAACACGTACAATTTTTAA 192158 37 100.0 38 ..................................... ATTTAGATTTCAGAAGTTTCTTGTACTGCAGGTGTTAC 192083 37 100.0 36 ..................................... CAAAGCTTCTCTTAAGTGTATCTACTCTATCAATAG 192010 37 100.0 36 ..................................... TCTATGAAATATGGAGATTCAGATGAACTAATTACT 191937 37 100.0 38 ..................................... TCCTAATGCTCCTACCACTAACTCTTGTAATTTCAAGT 191862 37 100.0 43 ..................................... TACCATAATAGTAAGCACCAGCTATAACTCCAGCGATAACAGT 191782 37 100.0 37 ..................................... CTGAAAATATTACAGTATTATTTCCAGTATCAAATGT 191708 37 100.0 37 ..................................... TAAATATCTATCAATTATACTAGCAATTTCTTGAAAA 191634 37 100.0 38 ..................................... GAACTCATATGATAATCATAAGAATATTGCTTACTTCT 191559 37 100.0 38 ..................................... GAACTCATATGATAATCATAAGAATATTGCTTACTTCT 191484 37 100.0 38 ..................................... GAACTCATATGATAATCATAAGAATATTGCTTACTTCT 191409 37 100.0 38 ..................................... TATTCTTATCACTAATTCTTTCAGTTCTTGCATTTAAA 191334 37 100.0 39 ..................................... TTTTTCTTCCAAAAAAACCTCTTTGAAATTTACAGTCTT 191258 37 100.0 37 ..................................... AAAATTTTCACTTTCTATATAGTAACTTCCAAATGCA 191184 37 100.0 42 ..................................... AATTCTTTTGTATGTCATCTTGAAAAGGAACTTCTAATCTCA 191105 37 100.0 43 ..................................... AAAAATAAAAGTAGCAATTTAGTTGCTACTTACAAAGAGTATA 191025 37 100.0 42 ..................................... TTTAGTACCACTAATACGTGCTAATAACTTCATACTTTCAAC 190946 37 100.0 36 ..................................... AATAATCCCTTAGCCAATTCAAACATCTAAACCTTC 190873 37 100.0 36 ..................................... AATTCATCTCTAGACATTGATAATCCCAATTCTCTG 190800 37 100.0 45 ..................................... TTCTCTTTAAGTATACGTCCACCACTCCAAATTTCAGTAACTTTA 190718 37 100.0 37 ..................................... TTTATCTTTTAACATACTAATCAACCTCCCAGTCATT 190644 37 97.3 0 ....................................T | ========== ====== ====== ====== ===================================== ============================================= ================== 71 37 100.0 38 GTATTGAAGGTAATCCATTTATAATAAGGTTTAAAAC # Left flank : ATAAAAAAAGTATTCTTTTTTCTCCCAATAGCTGTCCCTTGAGTTGAAATGTATAGATCCATAGATATTTCCCCCTATATTAAAAAATTTTTTAAATGAAAAATGTAATAAATATGGTTAAAATAGTTTAAAATAATAAAAAAATAATTATATATTATATATTAACATATATATTAAAAATAAAATAGAAAAACTTTAATAAAATAAATATTCTTTTAGAAAAAAATGTTTACAAATTTATAAATATGTAGTATAATATAATAAATATAAAAACATTAGTGTAGAAAAAAGAGTATAAGGTCAATTTTTTAACATTTTATTTTTTTGTTTGTATTAAAAATTAAAATGCTCACTATTTTAAAAAGTTAAGAAAAAATAATAATAAATTTTTAGTACAAAACAGTTAAAATCCTCAAAATACGGAAAAATGTTCAATTTTTGCTACCATATAAAAAAGACTTCTTTCTACCATAAATACACCATCTATCCCTTTGGTAAGG # Right flank : TTTTGAACTCCTATTATTGTATTAAAATTAATACAAATAAGAGTTTTTTTATGGTTGTTTTATTGCAAAAAATATATAAATTGTTATATAATGAGATATATAATTATTGGAGGTGGAGAGAAATGATTTCATTTGGTAAAAATATTCAAAATAGAAGAGTTGCACTAGGTTTAGATGTAAGTGAATTAGCACAACTTGCAAACTATGCTAATAAAAGTTATATAGAAAGAATAGAAGATGAGAAAATGTACCCATCTGCTAAAAAACTTCCAGATTTAGCAAAAGCTTTGTCTTGGAAAGTTGATGATTTATTTAAAAATGTTGAGCTTGAAGAAATTGAAACAGAGTATAGTTTAATACAAAATGCAATAAGATTTATTAAATCAATGGATAAAAAAGAAGTATCTTTAAAAACAGTTGCTCTTTCAATAGATACATATAAAAAATATTATGCTTGTTTATTTGATAAATATATTAGAGAAAATTTTTTAAATAAGGTT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTGAAGGTAATCCATTTATAATAAGGTTTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.68%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 2161294-2161590 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIRQ01000001.1 Fusobacterium nucleatum subsp. polymorphum strain KCOM 1330 (=ChDC F330) F330_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 2161294 30 87.1 36 ....-TT.......................G GTTACTTGGTAGAGATATAAATGCGAAAATAATGAC 2161360 31 100.0 35 ............................... AAAATGCCCGTAATCTAAAACCACAGGTAACTGAA 2161426 31 100.0 35 ............................... TCTGTTAGAATTCCTATATATTCAAATGCTAGTGC 2161492 31 100.0 37 ............................... AGTAGAGCATTTGATTTTATTCCATATCCATTTAAAC 2161560 31 80.6 0 .................A..T...T.TCT.. | ========== ====== ====== ====== =============================== ===================================== ================== 5 31 93.5 36 ATTTAAATTCTAATATAGAAATACATAAATT # Left flank : ACTATTCTTCTGTTTGCTTGTAAGGCTTTTTTTCTAACTTGCCCTAAAAAACTCATTATAATCACTCCCTATTTTTAGTAGATAAAACTTTAAATTTATCTTTCAAATTTATTAAGTATATATTAACACCAATTACGATTAAATGCAATATTTTTATTGTGAAATTCACTTAATTTTTAATAAAATTTTATTAATTTAATAATTGATAATTTTTATTTTCTATCTTAAATTTTTGTGTTCATTATATTAATATTTTAGTTGAATTTCGTTTTTTTAATTTTTCTATTACTTTATGAATACTTAATTCTTAGTTTACTTTATGAAGCTATACTTAACACAATAAAAAATGTACTCCCCCTTAAAAAATTTAATAAATTTAATTTAACTTATTAAAAAGGATTAACTTATATAAAAAACTAGAGTTAATCCTTTTAACTTTTTATTTATTCTTTTGTTATATAACAGCATTAAGTCTTTATTTTTCAATCCCTTTCTTCTGT # Right flank : TTAAATTTTCAAAACTTAAATTTTCTTCTATTAATTTAATTTTATCTCCTTCTGTAATTTTTTTTGAATAATTTTTAAGTAATTCGCTATAATCTTGAGAATTTTCTATTTCATCTTTTGATATTACTTTACAATAATTTTCTAAGCCTTTTTTTGAATTTTCGTAAATATCCTTATCTATGAAACCATATTTAGACCCCTTTTCTTTTAAATATTTGTCTTCAATTCTTAAATATATAAAACAATTAGCTTCATCTACTGATTTTTTGCCTTTACGATTACATCTTCCGAATCTTTGGAATAATGAATTTAAATCTTGTAACTCTGTAAATAAATAGTCAAAATCAATATCTAGTGAGGCTTCAACAAGTGAAGTTGATATCCAAATTCCTTCACCATCAAATTCAGTTTTTCCAAAATCTAAAATATTTTTTTCTTTTTCTTCTCTATCTTCACGAATAAAGTTTGAATGTAACATATTAATTTTATCTTTCAAATCA # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAAATTCTAATATAGAAATACATAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:90.32%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.10,-1.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [4-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-85.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //