Array 1 14784-15482 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJCY010000047.1 Klebsiella pneumoniae strain 69 NODE_47_length_15910_cov_66.0892, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 14784 29 100.0 32 ............................. GCTGTCAGTACTCAACGTTATAGAAATTCCTC 14845 29 100.0 32 ............................. GCAACTATTGCCTGCATTGCTGTAGACAAATC 14906 29 100.0 32 ............................. AATCAATACGCCCTGATGCTTAAAAATGGCCG 14967 29 100.0 32 ............................. AGCAACGTTTCCGGATTATATGGCTGGAACGT 15028 29 100.0 32 ............................. TGGTGCTCTCAACCGTCACCCGCTGGCTGGAA 15089 29 100.0 32 ............................. TGGTGTTGTCCACGGTTACCCGCTGGCTGGAA 15150 29 100.0 32 ............................. TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 15211 29 93.1 32 ............CA............... AGGTATTTGACCTCATCCAGAAAGGCACAGAC 15272 29 93.1 32 ............CA............... GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT 15333 29 96.6 32 ..............A.............. TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA 15394 29 89.7 32 ............CA...........A... CACTACCAGATCCGAATGGACACCCGTAATGA 15455 28 82.8 0 ............CAC.......-.....A | ========== ====== ====== ====== ============================= ================================ ================== 12 29 96.3 32 GTATTCCCCCCGTGTGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGTTATATATACAGTGTGCGCCGGGAGACCGGTTAGAGATCAAGGGGTGAAAGTCCCCGACCATTGAAGGACCAGCAATCCACAAGGTCCCCGAGTCATGCGTTGCATAC # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 39449-37959 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJCY010000005.1 Klebsiella pneumoniae strain 69 NODE_5_length_218854_cov_56.7902, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 39448 29 100.0 32 ............................. CATTTCATAGTGATTCGACTATTTAATTAACA 39387 29 100.0 32 ............................. AGTTCACGACAGGCAAAGTCTTTACGGTATGC 39326 29 100.0 32 ............................. TCTGCTGGTTACAGGAGAAAAAAATGATTGGT 39265 29 100.0 32 ............................. TTATTTCTAAACTAAGTTTTGTTTCATGCAGT 39204 29 100.0 32 ............................. TTTTTTTGACGAAGACGGCAACGAGTTAGAAG 39143 29 100.0 32 ............................. GTCTCTGCCAGTTTTACCTGCTCAGCGGATAA 39082 29 100.0 32 ............................. CTGACAGCTGGCGCTAACCCGTCGTTTATCGC 39021 29 100.0 32 ............................. CGTGAGCATCTGGGCATCTTCAGTGATAGCGT 38960 29 100.0 32 ............................. TATTTTTGAGATGATGGATTGTTGCACACCAG 38899 29 100.0 32 ............................. CGCTTCTCGGCTTCTCTGAATTTATCCGCCCA 38838 29 100.0 32 ............................. ATCCCGACCCGCTCCTCCAGAGCGAATACGAT 38777 29 100.0 32 ............................. TGCTTTATGGCAAATAAGAGAGGATATAACCA 38716 29 100.0 32 ............................. GCGTCCGCCTCCCAAATAGCCAGGCTGTTATT 38655 29 100.0 32 ............................. TAAATCCCAGCTGGTTTGACGTAGTGGCACTG 38594 29 100.0 32 ............................. CAATGAAGGCTTATAAGGGTGAAGAGAGCAGG 38533 29 100.0 32 ............................. CAGTCGGTAACGGCTGGGCGTGACCTCAAAGC 38472 29 100.0 32 ............................. GTGCCATTTTTATTTTGCTTAAAATAAATATC 38411 29 100.0 32 ............................. CCTATTGTGTTCAGTCGTAACAGCTGAATCAG 38350 29 100.0 32 ............................. GGCGCGGCGGAATAACCACTTTATGAGCAGGT 38289 29 100.0 32 ............................. GCGACCATGCCGTAGTCTTCAATGACGTAATC 38228 29 100.0 32 ............................. CCCCGTCGTCATTCGCGCATTCTGCGCACAGA 38167 29 96.6 32 .....A....................... TAACAGGGCCATTTTCCCGGGTTGCCAGACGA 38106 29 100.0 32 ............................. TCACCCTCGTAGCCGATACCACTTTCGCGCAG 38045 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 37987 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 25 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTTAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGTACCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //