Array 1 74903-73166 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBCT01000036.1 Escherichia coli strain Win2012_WWKa_NEU_12 Cont036, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 74902 29 100.0 32 ............................. AACTGCTGGAATTGTTTGATCAATTACCGGAC 74841 29 100.0 32 ............................. ATCATCACAGCCAGCCTCAAAGAGGTTGACGT 74780 29 100.0 32 ............................. TACTAAAAGTCTGGTTCACGAATATCAAAAGG 74719 29 100.0 32 ............................. CCGTCGGCAGCGGCGTTAAATGGGGCGCGCTT 74658 29 100.0 32 ............................. TGATAAATTGTCCGCCCTGGCGGAATACCTCA 74597 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 74536 29 100.0 32 ............................. AAAAAATGCGACGACCGCAGCCATTCCGATCT 74475 29 100.0 32 ............................. TCATACGCCTGGTATAGCGATCATCCCGATGA 74414 29 100.0 32 ............................. GCGTTGGAGTTCGCGGCGGCATTATTGAGCCT 74353 29 100.0 32 ............................. AGTCTTTAATCAAAATGGATTTTTATAATGAA 74292 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 74231 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 74170 29 100.0 32 ............................. CGGTGGCAGTGATGAGGCGTTCCCAATTAATG 74109 29 100.0 32 ............................. CGCACTCAAAATAGTAAATTAATTTATGAATT 74048 29 100.0 32 ............................. CATCCGGCGCTGAACATCGCCACCTGCCTAAC 73987 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 73926 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 73865 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 73804 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 73743 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 73682 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 73621 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 73560 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 73499 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 73438 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 73377 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 73316 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 73255 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 73194 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 18962-18078 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBCT01000070.1 Escherichia coli strain Win2012_WWKa_NEU_12 Cont070, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18961 29 100.0 32 ............................. TTCCGCGACCCGGCGATAAGGGAAGATGGGTG 18900 29 100.0 32 ............................. TAACGACAGAGGGATTCGGCAGCAAAGAGGAT 18839 29 100.0 32 ............................. CGTAGTTTCGGCAGTCCAGTGCCTCGTTACGT 18778 29 100.0 32 ............................. ATAGAACGGGACGAGATTTTTAAACAATGGCT 18717 29 100.0 32 ............................. CAATCTGAGCCAGACGCGACGAATAAAAGCAT 18656 29 100.0 33 ............................. TTGACGTTGATTTTGTTCGTTATGTTGCCAGCC 18594 29 100.0 32 ............................. CGTGGTCGGGATTGTTGCGCCAGTCTCCGGGG 18533 29 100.0 32 ............................. CACGGCTGGCCATTTGAAATACCTGTTGCTCT 18472 29 96.6 32 .T........................... AACAGCGAGCCAACTGGTTTCAGATTGCTGAA 18411 29 96.6 32 .T........................... GCGATCTCGCGGAATACACCGACGAGGCGGGC 18350 29 96.6 32 .T........................... TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 18289 29 96.6 32 ...C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 18228 29 96.6 32 ...C......................... GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 18167 29 100.0 32 ............................. GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 18106 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================= ================== 15 29 98.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAATTGGCGTTTGTCGATGCAAACCCATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATATTTTGTCGCCTCTGAAAAACCTCAATTTTGCCCATCCTGGACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGCGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 35156-35300 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBCT01000073.1 Escherichia coli strain Win2012_WWKa_NEU_12 Cont073, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 35156 28 100.0 33 ............................ AACCTACCGTCTTGGCTAGCGGTTGCAGCGAAC 35217 28 100.0 28 ............................ TTCACAGGTAACATACTCCACCCACCAT 35273 28 78.6 0 ................A...A.A.A.TG | ========== ====== ====== ====== ============================ ================================= ================== 3 28 92.9 31 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TAAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCACTGGATAAAGCGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTACGGACTTTTTATTTATGGGGTGGAACGGTGAAAACCCTATTTTTGGAGGTGAAGGTAAGTTGTTGATAATTAGTGCTGCTGGAAGGTAAGGATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : GCGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTTTGCTCATACTGTAAACAACTTGTGCAGTATATCTACATCGAGACAAGTTATGGACTTATACTTCCAAAGTACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATG # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //