Array 1 2342102-2343985 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018912.1 Flavobacterium columnare strain TC 1691 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2342102 36 97.2 30 ......A............................. TCATCATTTATTAATGAATCAAAATTATCA T,TATAA [2342103,2342111] 2342174 36 100.0 30 .................................... TTTAGTTATTAAAATGATTATCAAAGCGAC 2342240 36 100.0 31 .................................... TTTGTCGCTTCGCCTTAAAAAGTATTCTATA 2342307 36 100.0 30 .................................... GGGCTAAATATGGTGGTTTTGAAGAAGATG 2342373 36 100.0 29 .................................... CCCTTTTATTTTGAAATCATCAATCTTCA 2342438 36 100.0 30 .................................... TGTCTCCATTTTTAAGAGCTTTGATGTAGT 2342504 36 100.0 29 .................................... TAAAACCTCACGGCGACGAACTAAAGAAG 2342569 36 100.0 29 .................................... GACGATGCTGACGATATGGAGTCACGCAT 2342634 36 100.0 29 .................................... CTGACAAAACCTTTCAATGGCATTTGTTA 2342699 36 100.0 29 .................................... TAGAAAGTCGATATAACAACGGAGCAAAG 2342764 36 100.0 30 .................................... CGAATTTCATAGATTAAAACCTGGGGAATT 2342830 36 100.0 30 .................................... CATTGTGATTGACGTTTGTATTCATAGTTT 2342896 36 100.0 30 .................................... ATAGATCAAGACAATCCAAATAGATTTAAT 2342962 36 100.0 30 .................................... TGTAATTGGAACTCTTGTTGATGGTATAGG 2343028 36 100.0 30 .................................... TAAAAATGATATTACACAAAAAGCAAATAT 2343094 36 100.0 30 .................................... TTATTCAAAATTCTTTAACGAATAGATGTT 2343160 36 100.0 30 .................................... ATTCTGTGGTAAGACTAATGCAGGTGGCTG 2343226 36 100.0 30 .................................... ATAATCCATTATAATTTCCTCGCCTATTGC 2343292 36 100.0 30 .................................... CAAAAGTTTCAAAGGGATTTGTATCCGTGT 2343358 36 100.0 30 .................................... CATTTAGATTTAGTGAAGGAGCAGTCAAGT 2343424 36 100.0 30 .................................... AGAACCTTTGTCTAAAATAACAGTAGAACA 2343490 36 100.0 30 .................................... AAATTAATTAAAAGAAATTTCTTAAATAAG 2343556 36 100.0 29 .................................... CTCTATTATTTGGACCTGTTAAATCGTCT 2343621 36 100.0 29 .................................... TCAATCGAGAGCGACGTATGAACAAAAAG 2343686 36 100.0 30 .................................... TTCTTTTGTCATAAACTCTAATTTTCCATT 2343752 36 100.0 30 .................................... ATAAGGGTATTAAAAAAGTATAGTTTCATA 2343818 36 100.0 30 .................................... TCGGAAAAGAAAACATGACTGCTGCGAATG 2343884 36 100.0 30 .................................... GAAGTTTTTACCTTTTTCGAGCTTCGCGTC 2343950 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 29 36 99.9 30 GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Left flank : TCCAATTAAATAAGTCGATTAACTAGCAACTTGAATTAATTATGATTTAAGCGAGCAAGCTAAAATAGATTTGTTGCGTATTTATGAATATGGAATTGGTCAGTTTGGTCTAGACCAAGCTGATAAATATTTTGACATGATGCACGATTGTTTTAATAAAATTGCTAAAAATCCATATTTATTCCCTTTGGCATCAAATATTAAGTCAAATTATTACAAATGTGTTTGCGGAATTGACACCATCTATTATAAAGTTGTTACAAATGGAGTTATCATTACAACAATAGTCGGAAGGCAAGATATTGAAATTAAAATTTAGTTCATTGACATACACTATCAAATCGCAAATAACCAAACCTCATACTGATTGATTTGATTAAAGATTAGAAACCGAGGGACGAGGTTCAACGAAGTCAAAACACGATATTATTTGGTTAAAAATTACGATTGTAATTTCAGTTGTGGTTTACAAACACCAAGTCAATATTTGTTATAGGTGT # Right flank : TAGCTAACAGCTTAGTTATTAAATATCAAAGCATTAAGCCGAAATATCGTTAAAAAAAATGCTTCTTTTTTGGCACGTTATACCAAGATTGAAGCATTTTTTTATTTCTAAAACAGTTCCAGTTGGGTGGGTTGTGGTGCTTTAGGGGTTTCTACTTTACCCCAAAAGTTTTGTATGTTCCCAAATTGCTTGTCTGTAATTCGTAACATACTTACTTTTCCTGAAGGAGGCAGGAGTTTGTGTACACGTTTTTCATGTACATCGGCACTTTCGCTACTGGCACAATGCCGTATATATACCGAGTATTGCATCATACTAAAACCATCTTTCAAAAGTTGGTTCCGAAATCCAGAAGCATTTTTTCGGTCTTTCTTAGTCTCAGTAGGCAAATCAAAAAACACAAACAACCACATAATTCGATACCCGTTTAAATCCATAATTTTGGGTATTTTATCTTTTTACGATCGCCCGAAAAACACTGTTGTAAGGAACTTGCCGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTGTGGTTTGATTAAAGATTAGAAAACACGATATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.00,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [81.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 2900948-2901954 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP018912.1 Flavobacterium columnare strain TC 1691 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2900948 36 100.0 29 .................................... CTTGTCTTGATTTTATGTTTTGAGGATAT 2901013 36 100.0 30 .................................... TAGGAGAATATCTTCCTGTTGGTTGACCAT 2901079 36 100.0 29 .................................... GTTTTTCCTCTAAAACCTCGAAAACACGG 2901144 36 100.0 30 .................................... AAGCGTTTTTTAACTAATTTGATATTTAGA 2901210 36 100.0 30 .................................... CCTATGCTGCCTTGGTCAACGGAATAAGAC 2901276 36 100.0 29 .................................... TCACGTCGTTAGGTTGATTATTAATACAT 2901341 36 100.0 30 .................................... GATGTTTTTAATTTGTTTTATTGTATATTT 2901407 36 100.0 30 .................................... AGGTGTACCGCCTATATCTTCTAAATTGAT 2901473 36 100.0 30 .................................... TCTTCCACCGACAATAGTCTAAATAAATCT 2901539 36 100.0 30 .................................... TCTTCCACCGACAATAGTCTAAATAAATCT 2901605 36 100.0 30 .................................... TCAATATGAGGCATGTTAATTCCAGTAAAT 2901671 36 100.0 30 .................................... TATAATACCCTGACGACCAAATCTTTTACA 2901737 36 100.0 29 .................................... CTGTCTTACAAAGCAATCCAGTACGTGGA 2901802 36 100.0 29 .................................... TTGCGCAAAATCTGTGATATTGTTTTTAC 2901867 36 100.0 15 .................................... CACACACACACACAC Deletion [2901918] 2901918 36 77.8 0 ..........................GGA.G.GCGT | A [2901943] ========== ====== ====== ====== ==================================== ============================== ================== 16 36 98.6 29 GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC # Left flank : TGAAATCATAAATTTAGAAAACATAGATATTGAAATTTTACTTAAATATTATGATTATAATACTGAAGAGTTGAAGGAAAAAATAAAAAATATGGATGAGGATGAAAAAGCCAAAATAATTAATACTAAAGAGAATTATAACAAAATAACCAATGTTTTAATTAAAAAAGCACTTGTTTTAATTATCATTCGCAACAAAATGGCGCACAATCAATATCCACCTAAATTTATTTACGATTTAGCGAATCGTTTTGTCCCAAAAAAAGAAGAAGAATACTTTGCGACCTATTTCAACCGAGTTTTTGAAACCATAACAAAAGAATTATGGGAAAACAAAGAGAAAAAAGATAAAACACAGGTCTAAATACAATTGCTCTTTGACATTTTAAATTAGGATTAAAAAAATGACTACATTTGCAGTGATTAAAACAAAAAAAGTTCATTTTTTTGTATAAAAAATTGTAGTAATCCCTTACTATGAGAGGCTTACCAGCGTTTAG # Right flank : TTAAAAAATAGTCCAATGGACTATTTTAGCGAAGTAGCCAGGAGGCGCGTGGGCGTTTAAAACCGAATTCAATTTTTTTGAAGGAGGGACGAGCGTTAAGGAAGCTGTCCAAAAAGTACTAATTCAACATCCAGTTTGTCACTCCTACGTAAGGAGGAGTCTCATAATCAATAGTATGTAATTTCTTCCTTTGGTCAAAATCACAAGATTGCGAACTTTTTGGACAGTCTCTAGCAAAATAGCGAGCAGGCGTTTGAAACCAAATTCAATTATTTAAAAAATAGATAAACCATAATTCTTATTCATAGAAATACCTCTTTTTTTAAAATAACAAAAACAAACCTATAACACAATCAAGTAAATATGATCTGTATACTACCTCCTAAACTTCCTTATAATTTAACCTCAACACCTAAGATATTTTTTGTAAATTTGAATCATCAAACCATTTGGAAACATGAAGGCTAAATATATTAATCCGTTTACCGACTTTGGATTTA # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGGGAAAGCCCTTATTTTGAAGGGTATCTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //