Array 1 138248-141018 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVFE01000056.1 Haemophilus parainfluenzae strain 488_HPAR 257_204515_5457311_76+,141+,179+, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 138248 32 100.0 34 ................................ TGTGCGAGGAACGCAAGGCATTATGTATCGCCTA 138314 32 100.0 37 ................................ ACGGTTTAACTGGCAAAGCAAAATAATCGGAATATTG 138383 32 100.0 36 ................................ GCTTAATTAAAAGCGCTGTTTGCTTTTCTTTAGGGA 138451 32 100.0 35 ................................ TTCTATGACGCAGACGGCTCAAATGCAAATGGCTG 138518 32 100.0 34 ................................ ACTGTCCCGCCGCTTACCACTGCACCATTAACTG 138584 32 100.0 34 ................................ ATCAATGTAGAACAAATTCAAACCATCACTAAAG 138650 32 100.0 35 ................................ TAATATCTTTTTACTTTATTTTAATAGGAAGAAAA 138717 32 100.0 34 ................................ CATCGCCATTGGAGGTTAACTTGTCGCCGACTTT 138783 32 100.0 35 ................................ AACACTGCCAGACCACTTGCTAACCGGTTCGATTC 138850 32 100.0 37 ................................ TTTGAACTTTGAAGAAGTTTTGTGATTGCTGACGTAG 138919 32 100.0 35 ................................ TTTAAACCTTTATCCAAAGCTTTAATTTTCCAAGA 138986 32 100.0 34 ................................ TATTTCAATTTGCACCGCCATAGATTATTCACCT 139052 32 100.0 37 ................................ CGTGCCACGCAATAAAGCAAACCATGCCCACACAAGC 139121 32 100.0 35 ................................ CAGAGCAACCTTATGGATAATGCAAGTTCACTTGA 139188 32 100.0 34 ................................ AATATCATTGATGATAAATTGCTAATTAAAACTG 139254 32 100.0 34 ................................ AAGAACTATCTAAAAAGTTAGATGGGGAGTTAAA 139320 32 100.0 35 ................................ GCCGCCTCAAATGCTTTTGCTCAAGACATTCAGCC 139387 32 100.0 35 ................................ TTTTTTAAAGTGCAAATATCGACCGCTCTTATCAA 139454 32 100.0 33 ................................ TTGATATTGCTCCAAAGAAAGATTTTTACTCAT 139519 32 100.0 37 ................................ GCCAAGAAGATTACTAATAACATTGACCACATCCAAC 139588 32 100.0 35 ................................ CACATCCGGCACAATCACCGTTTTCGGCTTGTAGG 139655 32 100.0 35 ................................ TGATGAAAGTGAAGATGAGCAAAGAGGACACTTTG 139722 32 100.0 36 ................................ TAAACGCATAGGGAATATTACGGCAACCGTGCAAAA 139790 32 100.0 34 ................................ ATCTGCTTTTAGTTGCAAAAATCTGTAAAGATAA 139856 32 100.0 34 ................................ CCACTATGTGAGAATCTGTTTTGTTGTAGGCGAT 139922 32 100.0 34 ................................ GTCTGTGTGTTTGATTTCTTCAAGGTTTAAACCT 139988 32 100.0 34 ................................ ATTAAATCACTCCCCCACGCTAAAGCGTGGCATT 140054 32 100.0 34 ................................ AGCATGCCGATGAAGTGGCGGAAGTGGTGATTTA 140120 32 100.0 35 ................................ AGTTTATGCCTGAAAAGCAAATTGAAATCGCAACG 140187 32 100.0 34 ................................ AACCTTTACGGCGCGGACGCAAAAATTCTAATCT 140253 32 100.0 34 ................................ AGCATCCCGGTCATCGTATCGCCTGATTTAGATA 140319 32 100.0 34 ................................ TTAGTCAGCCCAGTTATGTTAGTCGTAGGTGCCG 140385 32 100.0 38 ................................ CTGCTTATGTCTGATATATCTTTAACGCTTTACGATGA 140455 32 100.0 35 ................................ CTTAATTAACTGTTGATAATATTCTTGAGCAGCAT 140522 32 100.0 34 ................................ GGCAGAGCGACAGTTTTAAGCATGCTAACGCGTC 140588 32 100.0 36 ................................ CGGCAGTTACACGCGCTTGTTGGTTGGCGACCAATA 140656 32 100.0 35 ................................ AGCAATATCTGCTTTAAGTGTATCAATCTTCGGTA 140723 32 100.0 33 ................................ GTGGTTTAATCGGTAAACGGGTATCCACGATGT 140788 32 100.0 35 ................................ TGCAACAAGTACGGGAATAGGTTAAAGCCAATAAT 140855 32 100.0 34 ................................ GATAGTCCTCCCTCAAATAAAGTCCACCCATCAG 140921 32 100.0 34 ................................ AACTGGTGCTATTATACTACAAAATCACAAATAA 140987 32 87.5 0 .............C.......CA........A | ========== ====== ====== ====== ================================ ====================================== ================== 42 32 99.7 35 GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TTGATGAGATAAACCATGTTAATGCTGATTACTTATGATATTTCTTTTGACGATCCAAACGGGCAAGCGCGATTGCGCCGCATCGCAAAACATTGCTTAGATTACGGCGTGCGCGCGCAATATTCAGTATTTGAATGTGATGTCACGCCTGACCAGTGGGTCATATTGAAAAACAAACTGTTGGAAATCTACGACCCCACGTGCGACAGCCTGCGTTTTTATCACTTGGGTAGTAAATGGCGTAATAAAGTGGAACATCATGGGGCAAAACCGGCAGTGGATGTATTTAAAGACGTGCTTGTCATTTAGTTCGCTAACCTGTTGTTCTCATTAAACCCCTAATGGGATAGCGATCCTTATTTTCTTTAACAATTTGGATGAATTAATCTATTTGTATAACGACAATGTGGCGGTTATACTTACCAAACTTCTTATCATAAAATTAGTTAGCGAAATACAGTGTTTAATACACTGATTTTTCTTGCTTTTTTATGTAGGGA # Right flank : AATAAACACCGAAGGGAACAACGTTAGTTAATAAGGAAAGAACATGGGCGTTAAACGCATTGTGGCCAATATCAACGTAACCCAACCCGTCGCAGCAAAGGCTTTCTACCATGACTTGCTTGGACTGGAATTGCTGATGGATCATGGTTGGATACAGACCTACGGGCAGGATACAACCATGTCTGTGCAGGTTAGTTTTGCCAGTGAAGGCGGTTCTGGCATGCCTGTGCCTGATTTGTCTATTGAGGTGGACAATCTGGGCGAATTATTGGAACGGATGCAGCATGCTGGTTTCACACCTGAATACGGACCAGTCACTGAGCCCTGGGGCGTGCGCCGTTTTTTTGTGCGTGATCCGTTTGGGCGGCTAGTGAATATTTTGCAGCATGAATAAGTTAACTTAATGCGTGGCTACGCCATACACCCTAGCCGCCTCCGCGCGGCTGTGTGTTGAAACATGGAGAAAGGAAAATTTTTCACATCTAAATAGGCTGCGCCTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //