Array 1 291662-291301 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIRM01000001.1 Fusobacterium nucleatum subsp. polymorphum strain KCOM 1267(=ChDC F290) F290_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 291661 31 100.0 34 ............................... ATGTAAACAAAAGAAAATTTAACTTATTAGGAGG 291596 31 100.0 35 ............................... AATTAACATGAGGTAGTTTCATACTAACCACCCCA 291530 31 100.0 35 ............................... ATATAACAGATGTTAGATAACACTTTTTTAAAATT 291464 31 100.0 35 ............................... TTTAAAAGAGTTATAAGGCTATAATTTAAAGTTTT 291398 31 96.8 36 ..............................T TAACATCTAGTTCAATGAAAGAAAAATCATTATTCA 291331 31 90.3 0 .........................A...GT | ========== ====== ====== ====== =============================== ==================================== ================== 6 31 97.9 35 ATGAACCTTAAACATGAAATGTTTTGAAATA # Left flank : TAAAATTAATTTATTATAGAACTTTCCTTTTATTATTAATGTACAATAAGTTCAACATTAGATAATATACACACTTTGACTAATTAAGGTCAATTATAAAGTTAAATGTATGATATAGTATTTTATAAGTTTATATTGATTTGGTCAAAGGATATCTTAAATACTCAAGGGGCTGTTACAAGCTGATGATAAAAATCATCAATTTGCAACAGCCTAAAGCCCCAAAGAACTTGGTAAATATATGTGGCTAATAAAAGTACATATTTCCCAAGAAGCTCCCACTTCTACAAGTGGGAGTAGTTCACTTTATAGTAAATATAAAAAAATTAAAATAATAATTTTACCAGGTGATATTGTAAATAAAAGTTTTAAACTAAGAAAATATGGACATTTAAAAAAATTGAAAGAAAAAATGAATTTACTTGGTAAAAATATATAAAAAACTTGTAATATTGGAAAAAATAAGGTATTATTAATTCATAAAGCTTGAAATTATAGCT # Right flank : TAATATCTTTATTACTCTCTGCATAAGTTTTCCACATGAACCTTAGGAATATTATGGGATTATCATAAAATAATGTAAGGTAGAATAGATCAAAAAGTTGATAAGGAAACCTATAATAAAGATATGAAGTACCTAGAAAAAAGAAGTGATGAGAGAGACAATGAAATCAAAGATTTGATTAAAGACTTAAAAGTTGATATGAAAGATAGATTAGATTATATCAAAATGGATATTAATTATCTTAGAAATAGAGATTGTAAGGGAAATAAAAAAGAATAAGATATAAAAAAAGTTCAGTAAAATAATTAGCTGAACTTTTATTATAATAATTTTTGTTATCTAACACCAGTTATTTAATAATATTTTAAAATAATGATTTTTAATAAATAACAAATAAGTAACAAAAAAGTATCAGAATACAAAAAAGCCCTCAACTTTTTTCAAGTTCGGGCTTTTTTGTAGAAATTAAACTATAATTAAGGAAACGATACAAGATAAAT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGAACCTTAAACATGAAATGTTTTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 123042-125276 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIRM01000002.1 Fusobacterium nucleatum subsp. polymorphum strain KCOM 1267(=ChDC F290) F290_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================= ================== 123042 36 100.0 37 .................................... TATAAAAGGTTTTGCTGCATTGAAGGCAGCAGCTATG 123115 36 100.0 37 .................................... TTTATAGATGAACAATCAGATGAAAATTTTGCTAAGG 123188 36 100.0 37 .................................... AAAAAAGATAAATGATTTATTAAAAAGTATTGAAAGA 123261 36 100.0 39 .................................... CAATAAAGAAATTGAGCTAGACAACCCAAGACTATACTA 123336 36 100.0 45 .................................... GTTAAGTGCTTTCTCATTCACTATTCAATTAAAAGGGTTTCTTGG 123417 36 100.0 35 .................................... CTATTTACAACTACACCTCACCCTGAAAAAGCAAA 123488 36 100.0 42 .................................... TTTTATCATTCTTGTAGCTCAACAACCAAATTCAGATATAAT 123566 36 100.0 42 .................................... TTCCAGTTCCAGTAGTCCCAGCAATTACACAATGTGGCACTT 123644 36 100.0 39 .................................... TCTCCAATCATATATTTGTATTGATAAACGAAGTTTAAA 123719 36 100.0 34 .................................... GAGAAAAGAGAACGGGGCTAGTGTACTAACATAA 123789 36 100.0 39 .................................... CAAGTCATGCGGCTTGTAACAGTGTTATTTATTGCTTTT 123864 36 100.0 34 .................................... GTTGCAAACTCTACGACTATCCGACCAGCATTTT 123934 36 100.0 42 .................................... TCTATTTATACCTATGGTATAATCTCCATTTTTTTTGCAATT 124012 36 100.0 40 .................................... TTTTGGAAGGAAATGACTTTTGAAGAAGCTAAAAAAATAG 124088 36 100.0 39 .................................... TGTTAATAATCAAAATGTTAATGTTGTAGAATTAAAAGA 124163 36 100.0 36 .................................... GTAAAATTGTTGCAATGAAAGGTGCTTGGGGTGATA 124235 36 100.0 44 .................................... AGGTTGCAGAGCCTTACGATGTTGTGACACATGTTTTTGATGAA 124315 36 100.0 42 .................................... TTAAGAAGCAATTGTGATGGTTTAGATAAGGAGGCTGGATTA 124393 36 100.0 39 .................................... GTTAATAAAAGAATCTCTATAAAAATATACCTAAATAAA 124468 36 100.0 41 .................................... GAGCTGGTAGACAGGTGAGTGCATGAACTTCAAGCGTGTAC 124545 36 100.0 41 .................................... TTGTAAATTCTTTGGTCTCATATGGAACAGATCAGATTAAA 124622 36 100.0 40 .................................... AAAGTTTTTTATTTATCTTTTTAATATTTTTAATAAATAA 124698 36 100.0 42 .................................... TCTCTGTTATAAACCATTTTATTCATCTCCTTCTTTACTCAT 124776 36 100.0 42 .................................... ATTTTGACAAATATATTTTATTCTACCATCAAAATTGATCCA 124854 36 100.0 42 .................................... CCAAAAGTATTAAAGGCTATTGAAGAAATAATTGGAAGTAAA 124932 36 100.0 45 .................................... CAAAGTATCTTCTTCCTTTATATCTGTCATTATGTCTCTTATAGC 125013 36 100.0 40 .................................... TCCCCATTTTTTTAATATCTAACATTTTTAATACCTCCAT 125089 36 100.0 37 .................................... TCTTTTGTGAGTATTAATTAATCTATCATAATATACA 125162 36 97.2 43 ....................A............... AAGAAAAACTCCAAAGCATTAAGTTCTACAAGTACAGTATTAA 125241 36 77.8 0 ............................TTCCTTCT | ========== ====== ====== ====== ==================================== ============================================= ================== 30 36 99.2 40 ATAAGAAAGAATATAACTCCGATAGGAGACGGAAAC # Left flank : GCCAATATATACAAATCAGTTTTAATCAGGTGATATTTATGGATAATTGGGATTTTTTAGATGAAGATTTTGAAAAGGAAGTTTTTGAAGATAACTTTACGGTTATTATAATTTATGATATTATATCTAACAAGAGAAGAACACAATTATCCAAACTTTTGAGTGCATTTGGATTTAGAATTCAAAAATCTGCATTTGAATGTCTTTTAACAAGAGAAAAATATAAATTACTCATTGAAAAGATTGATAGATATGCAAAACCAGAAGATTTAATAAGAATCTATAGATTAAATCAAAATGTAGTAACTCAAATTTATGGAGAAAAATTAGAAATTGAAAATGAGATGTACTACTTTTTCTAATGAAAAGTAGACGATATTATAAAAATGGGAAGTTCAATATGATTTTTGATAAAACAAAATATAAATTTTTAAAATTTAAAAAGTCACACGATAATAGCTTTATAAAATATTGCAAACAAAAGTTTTTTTGAGTATAGG # Right flank : TATTGACAAGAAATCAATATCTTTTTATAATATCAATATAAAGAAATAGAATTCTAAAAAAGATAAAAAAGCCTAAAAATACTATGATATTTCAATATTTAATCAAGAATTTCTCACAATTGAAATTTTTATAGAAAGAAATAAAAACTATTTAAGGAGGAATTTTATGAAAAAAATACTATTGTTTACATTATTTATAGGAATTTGTATGAGTGGAGTAGCAAGTACAAAAGAAAAAAATCCAAATCTTTTAAAACAAGTATATAAAAAGGAAGAATTGATAACATTGGACAAACAAAATGTAGCAGGAGGAAATGGAACTTTACATGGGAAATTTGCTTTTACAAGAGATATGGCTACTGAAGATGAAGCTATCAAAGAAATAGGATGGATGACACTAAATAAGGGTGAATCTATTGGAGTACATCCTCATAAAAATAATGAGGACACTTATATTATTGTTTCTGGAGAAGGAATCTTTATAGATGGTTCTGGAAAAG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATAAGAAAGAATATAACTCCGATAGGAGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [75.0-85.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 19910-18481 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIRM01000005.1 Fusobacterium nucleatum subsp. polymorphum strain KCOM 1267(=ChDC F290) F290_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 19909 30 100.0 37 .............................. GGAAACAAAAAATTTTATTATTGTTTAAAAAGCCAAA 19842 30 100.0 37 .............................. TTTCTTTCTTTTGCTCTTATTGTACTTTCTGCAAGTT 19775 30 100.0 35 .............................. AATTATGCCATAAGGCTATTATTATTTTAGCATAA 19710 30 100.0 36 .............................. GATGTTAAAAGATGAAGCTAGTGCATTACAAGATGT 19644 30 100.0 36 .............................. TGATAATATCTAACTCTTGAATATGCTTCTCCTTCT 19578 30 100.0 38 .............................. GAGGCATACAATTTAACTTGTTTAGTTGCTACTATTTT 19510 30 100.0 37 .............................. GGAATAATAAATATTTTCTTACTAATCTTGCCTTTAA 19443 30 100.0 35 .............................. TGAGTTAGGACATGCTATATTACATGCTTCTAGTA 19378 30 100.0 37 .............................. TGCTTTAAAGGGGGCTAAATGATAATAGGCTATGTTA 19311 30 100.0 37 .............................. ACTGTTATTACAATTAAACTTGTTAATAAAAATATTT 19244 30 100.0 37 .............................. AGAGAAATAGGTGTGTTTGTTAACGATAATGGGCAAG 19177 30 100.0 35 .............................. TTAAAATAAAAAGAATTAGATGAAGTTGAAATATT 19112 30 100.0 37 .............................. CTTTATGTAGGAGAAGACTTGGCACAATTTAAAGACG 19045 30 100.0 37 .............................. TAATATTTTTTTAAATAGCCCCCTAACTTCCCCTAAA 18978 30 100.0 35 .............................. TGAAAGAAGCAGAAAATAAAGAGGTTCATGTTCAT 18913 30 100.0 36 .............................. CAAAAAGTTAGAATATGGATAGACAATGCAAAAATA 18847 30 100.0 38 .............................. GAAAATACCTTTAATGGGTTTTATTTAGGTTCTGGATA 18779 30 100.0 36 .............................. CCAACTTTTAAAATATTCTTCCATAACTTCTCTAAA 18713 30 100.0 38 .............................. CCATTTCTATGTACTTTTGGATAACTTCAATAGCATCT 18645 30 100.0 38 .............................. TTTGTTATTATAAGACCAATAAAATCTGTACAAAAATC 18577 30 96.7 38 .............................G GTCAACAAAAGAAAATATTGTTATTCCTAATGTAGGTA 18509 29 90.0 0 .......................AA-.... | ========== ====== ====== ====== ============================== ====================================== ================== 22 30 99.4 37 ATTTATGTATTTCTATATTAGAATTTAAAT # Left flank : AATCTTTTCAAATGTGGTGGTGATAAAATGTATGTAGTTGCAGTGTATGATATTTCATTGGATGAAAAAGGTAGTCATAATTGGAGAAAAATTTTTGGAATTTGTAAAAGATATCTTCATCATATTCAAAATTCTGTCTTTGAAGGAGAATTATCAGAAGTTGATATTCAAAGATTAAAATATGAAGTTTCAAAATATATTAGAGATGATTTAGATTCTTTTATAATTTTTAAATCAAGAAATGAAAAATGGATGGAAAAGGAAATGCTAGGTTTACAAGAAGATAAAACTGATAATTTCTTATAAAATTTATTGTCTACCTCTCATAATGTAAAATTACTGGAAGATTGACAAAAGTCAAAAAAGTCTTTATTTATAAATAAATTTAAGAAAATAAAAAAAATTTAAGAAATTAAATTTTTTTATTTTTTACTAAAAAACTTATATTGACAAAAAGATATTAAAAAAGTATTATATGGGAGTAGTTTTTTTAGGTAGCT # Right flank : ACAGAAGAAAGGGATTGAAAAATAAAGACTTAATGCTGTTATATAACAAAAGAATAAATAAAAAGTTAAAAGGATTAACTCTAGTTTTTTATATAAGTTAATCCTTTTTAATAAGTTAAATTAAATTTATTCAATTTTTTAAGGGGGAGTACATTTTTTATTGTGTTAAGTATAACTTAATAAAATAAACTAAAAATAAAGTACACTTAAAGTAATAAAGAATTTTAAAAAATAAATATCAATTAAAATGTTAATATAATGAACACAAAAATTTAAGATAGAAAATAAAAATTATCAATTATTAAATTAATAAAATTTTATTAAAAATTAAGCGAATTTCACAATAAAAATATTGCATTTAATCGTAATTGGTGTTAATATATACTTAATAAATTTGAAAGATAAATTTAAAGTTTTATCTACTAAAAATAGGGAGTGATTATAATGAGTTTTTTAGGGCAAGTTAGAAAAAAAGCCTTACAAGCAAACAGAAGAATAGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTATGTATTTCTATATTAGAATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:90.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.10,-1.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //