Array 1 69667-70111 **** Predicted by CRISPRDetect 2.4 *** >NZ_RFLY01000002.1 Lysobacter pythonis strain 4284/11 2_226880_46.7247, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 69667 28 82.1 32 ......C..T...T........TG.... TCGGTGGTGTATCTGTCCTCGCGGTTGGGCGT 69727 28 89.3 30 ...........C..........TG.... TGTAGGGCAGGCGACGGATGACCGCATGGG 69785 27 78.6 32 .CC.....-..C..........T.A... GGCGGCGGGTTGAGAACGTCTTGCCTTTGACC T [69803] 69845 28 82.1 32 .......CT..C.T.T............ AATTCGGCGTGCGTCATATCGCATGCAAGAGC 69905 28 89.3 33 .........T.C.T.............. GGTGGGACGGTTCCCAGTCTGGCTGGGGATGGC 69966 28 100.0 31 ............................ GCGCTCGGTATCGTTGACGATCACGCACGGG 70025 28 78.6 31 ....GT..T..C.....T..T....... CAAGTCCTGCACCTGTAACCATCACGCGCCA 70084 28 89.3 0 ....G......C..G............. | ========== ====== ====== ====== ============================ ================================= ================== 8 28 86.2 32 GTTCACGGCCGTGCAGGCCGCTAAGAAA # Left flank : ATGGCGGCGTGATGGTGGGCGACCAGGACGTGTTCGTGAACGTGGTGGGCGGCATCCGCGTTCAGGAAACCGCTGCCGACCTGCCGGTGCTGCTGGCGGTGCTGTCTAGCTTGCGCGACCAGCCGTTGGCCGAGAAGACCATCGCGTTCGGCGAGATCGGCCTCTCCGGCGAAATCCGCCCGGTGCCCAACGGCGAGGAGCGCTTGAAGGAAGCCGCCACGCATGGCTTCAGGCGCGCCATCGTGCCGAAAGCGAACGCGCCGAAGTCCGGTTCGATCAACGGGATGGAGGTGATCGCGGTAGAACGGCTGGCCGAGGCGCTGGAGCAAGCGTGAGCGCCGCGCCGGCGACGCCAATGGCGAGGCGGTTGACGTCGTGTGTCGTGACCTAGCTGGCGGCACGCCAGTTTCGGCCTCGAGTGGGGCGGATGGAATGCAGCTTCACGAAGCCGCGTGGAGCGCTTGGAAAAAGCACAGCCCGAAGTTCGCCTTCTTGGGCGT # Right flank : AACCGAACGCAGCCAAGCGACCGTTAACGATGAGTTCACGGTCGGGGCGGAGAAACCGCGCATGGGCCGTGAGTCCCAAACCGAATTGTCGTGGGCCCGTGGCGGGCATCGAGGCAATGGGCCGGGCGCCGGTCTCGTTCAGCGTAAATGGCGTTTGTCGAACCAGAAGGGTTCCACCCGCGCTTCGTTCAGATGCGTCCGGGCCTGGGGATGGGCGGGGTTGACGAGGTAATTGCGCGCATGCGGCATCACGGCGGAAGGCAGCGGCAGCAGCAGGGCTTCGCCGTCGTCCAGCCAGTGGTTGCCCAGCGCCTGGGTGGTCGGTTCGTTGGCTTGCCAGCCGTCCGGCAGTTCCGGCGGGGCGGCTTGTAAGGCGCCCTTGCCCACATCAATGGCGATCAGTTTGAGCGTGACCGGGATGTTGGCGAGCGAGAGCCGCATGTGCGCCATGACTTCCAGCGCGGCCAGCGCCGGGTGTTCGGCGGCATAGAGCACGCTGC # Questionable array : NO Score: 3.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.31, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACGGCCGTGCAGGCCGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 46236-45496 **** Predicted by CRISPRDetect 2.4 *** >NZ_RFLY01000007.1 Lysobacter pythonis strain 4284/11 7_173110_44.1388, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =========================================================================================== ================== 46235 31 71.0 34 TG.G...TT..C..........CG......A TCGAAGTGCATGGAGGCCGTGACAAGGCAGGCAC 46170 31 87.1 91 ....G......AA....A............. GCCGACTGGCGCTTGCCGGAGGTTGAGGAACTGATCATGCCCTTGGGGCGGGGAACGGGACGTGCTCCGTGATTCCCGGCCTTGCCCTTGG 46048 31 83.9 34 C..G......T.....G....A......... CTCGAAAGGTCGCCGGCTTCGCTGTTGCACCTGG 45983 30 87.1 35 .A.G.............T.....-....... CACGGGCGAGCACCGGGAAGATTACGGATGCGACC 45918 31 90.3 34 .......T..T.......C............ AGGAATGGATGGTGCAGCGTGATGAACAGGTCGC 45853 31 90.3 35 ........T.G..A................. TTCCCGGCTTAAACCGAACTCGGCCATCAACGCCG 45787 31 100.0 33 ............................... TCGTAAGGTAGAGACATCGTGTTATGTACTCAT 45723 31 100.0 35 ............................... AGCATGTACGCGGCCGCAGTCCCGAGCGCGTCGAC 45657 31 96.8 35 ..........A.................... CGTGGTGAGGTGGTCGAGGTGCAGCTTGCGCACGC 45591 31 96.8 34 ........T...................... AACTATAAGAATATGTCCAACGGCCTGGCCACGA 45526 31 90.3 0 ........T.....A........G....... | ========== ====== ====== ====== =============================== =========================================================================================== ================== 11 31 90.3 40 GTCACGCCCTCGCGGGCGTGGGAATTGAAAC # Left flank : GGGCACAGCATGGGCGGACTGGTGGCGGCGGATTTCGTCGCCCGAGGCGTGCGTCCGATCGATGGACTGGTGCTGTCCTCGCCGGCGCTCGCCAGCGGGATGTCGCCGCTCCAGCGCGCCACGGCGGCGCTGCTGGCCCGCCTCGCGCCGCACTTCGCCATCGGCAACGGGCTGAAGCCGGAATTCATTTCGCACGACCCGGCCGAAGTCGCCGCCTACCGCGACGACCCGCTCGGCCATGACCGCGTCAGTGCCCGTCTCGCTCACTTCATCGATGTCAACGGCGCACCGACCGTGGCCGCCGCGCCGCGCTGGCGGGTGCCGACGTTGCTGCTGTTCGCCGGCGACGACTATCTGGTCGATGCCGAAGGCAGCCGCCGCTTCGCCGCCGCGGCACCACCGCGCATGGTCACGGCCCGCGAGTTTCCCGGTCTCTACCACGAGTTGTTCAACGAACGCGACCGAGAGCCGGTATTCGTCGCCTTGCGCGCCTGGCTGGA # Right flank : TTGGTTTGGCGATGCGGTCACGCCTTCACCGATGTGAATTAAAACCTGTTTCTTCTCGTCGTAGGCTGGCAATCGGGGGCGGCGGTTTAGTCGGTATCCATTGCGAAGTAGGGCGTGGTTTGGCTGCGGGTTTTCAAAACCATCGTCGCTTTATGGCACGACCTTTCTGTGGTGGAAGTCGGCGGCGGGGTATCTGCCGAAAGGCGGGATCGCACAATGCGAGGTGTGGGTACCCGATGGCATGTGTTTCTGCTCGCTGTGTCACAATTCGTCTCATTGATCGGATCGGGTCCAGGTGCTTCATGCGGGATATGTTGCAGCTTGAAATGCGCGGTCACATCGCGATTGTCCGTCTCAATCGTCCAGACAGGCGGAACGCTTTGTCGTTTGATTTGATGCGTGAGTTGACGGCGCTTGCCGGGCGTTTGCGGCGTGATCGCGCTCTGCGGGCGGTGGTGCTCTGCGGGGCGGGGGAGTCGTTTTGCGCCGGGTTGGATGTT # Questionable array : NO Score: 7.61 # Score Detail : 1:0, 2:3, 3:3, 4:0.51, 5:0, 6:0.25, 7:-0.47, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCCCTCGCGGGCGTGGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : NA // Array 1 11889-13116 **** Predicted by CRISPRDetect 2.4 *** >NZ_RFLY01000016.1 Lysobacter pythonis strain 4284/11 16_77144_47.5103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 11889 28 100.0 32 ............................ TGGATGAGTCCCGGCCCCTCTTATTACTTGCT 11949 28 100.0 32 ............................ ACTGATTGAGTCCCGCGGTACGCAGCTCACTA 12009 28 100.0 32 ............................ ATACAGGGTTAGTACAGACGCGAGCGACAGGA 12069 28 100.0 32 ............................ GCACGAGGGATCGAGGACCGGCCGCCACCGGG 12129 28 100.0 32 ............................ CGGTCAGATCATTGCCCCGGCGTAGCAACTCC 12189 28 100.0 32 ............................ TTATCGACACCAGTAAGACCGATAAACGATAC 12249 28 100.0 32 ............................ GGCCACATCTCGGGGGACCGAGACGTCAAATC 12309 28 100.0 32 ............................ ATCGAGATCATGCGGACGGACATTAATACGAT 12369 28 100.0 32 ............................ TCCAGGCAGGGTAGCAACTGTGGCAAAATCGA 12429 28 100.0 32 ............................ AATCGGGTGCTGCAAGATTACGGGATAATCCG 12489 28 100.0 32 ............................ GCTAACCACGCGGGCTGTCGAAATACTGGAAG 12549 28 100.0 32 ............................ ATCATCCCACCGCCATGACCCATCATCACCCA 12609 28 100.0 32 ............................ ACGGTCTTGTGCCCGCGTCCCGTAGGGCCATC 12669 28 100.0 32 ............................ ACAAGAGACTCATCAGGCTGATAAAAGCTACG 12729 28 100.0 32 ............................ GGGCGAAGTGCAGCTCTGGAACCGCGCGCATA 12789 28 100.0 32 ............................ AATTACGGGACACTATCTCAAGACGACTATAG 12849 28 100.0 32 ............................ ACGATGGATGCGAGTATCGCCCTATAGGGCTA 12909 28 100.0 32 ............................ AAACGATCAGCCGTTGATTTCTGTTCGTCGGC 12969 28 100.0 32 ............................ TGCGACGGCCCCTGCCTGCGGCCACCACCCTC 13029 28 92.9 32 ...T......A................. AAGCGCCAGGGCGTAACGGACAGCCCGATATG 13089 28 89.3 0 ......................A.AT.. | ========== ====== ====== ====== ============================ ================================ ================== 21 28 99.2 32 GTTCACGGCCGCGTAGGCCGCTTAGAAA # Left flank : TCCGAAGATTTAAAACTATTGATGGAAAGAGACTGGTTCCGTGGCATGCGTGACCATGTGCGAATCGATGGTCCAAATCCCGTGCCGGCGCATCGGACATATTGGCGGGTGGAGCGCCAGAAAGCCAAGAGCGCAAACAACATGCGGAAACGCGCGATGCGGCGACACGGATTGAGTAAGGAGGAAGCAGCCAAACGTATACCGGATGATGCTGGTGATTGGCTGGACTTGCCATTCACTACCCAGCGCAGTAGCAGCACCGGCCAGCACTATCGTCTGTTCATTAACCAACGGCAAGTAGACTCGATCGGCTCGGGGGGCTTCAACAGCCATGGAATGAGCACGGGGAGCGGTGTACCGAGCTTCTGACCCAAATTTCGGCAAGGCCAAGGATGGCCTTTGTAATCAATAACTTAGCCATTCCCAGCATAAAAGGGATAACTTGCTCTCAGTTAACCTTGTTCTTTGTAAATTCAATGGGTTACGCCGAATTTTGGCTA # Right flank : ATGTATGCCGAAAATCCCATTTGCTCGACGGCACTCACGGTCGTATGGAAATACTTTAATATTTTCGGATCAAAATCTAATTGTCGGTGGATTTTTTTCATGTAAAAAATGGATGTTTTGAACTTATTGCCAACGGGGTGGGTTGACTTATCCAAAATTAATATTATTGTTGTGCTGCCCGCATTGAGTAATCATTGGCGCCCAGGTGAGCGGTTCCTGACGGGATTGAAAGACAAGTGCTCATTAAGGCTGGAGTATTCCAGTCAATTAATTCGTTCTTGGATTTAAATCTCCCTGATTGATAGGTAAGCTCTATCGTGCGGATGGGAAATTTCGATTTCATTTTGATGGCGAACTCTCGCAGTATGCCTGCGGGAGAGCGGTATCCATGTGTATTCAAAGCCGAGGTTTGCCATGACATTCACTACAACGCTAGGGACGACAGCTTTGCTGGTCGCCGGTCTGACGACTGGTGGCGTCTCCGACAGCACAATGACGCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACGGCCGCGTAGGCCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 28146-37106 **** Predicted by CRISPRDetect 2.4 *** >NZ_RFLY01000016.1 Lysobacter pythonis strain 4284/11 16_77144_47.5103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =========================================================================================== ================== 28146 31 100.0 34 ............................... ACGCTGTACTACCGCATGATCGACGGGCCTGACT 28211 31 100.0 34 ............................... ACCTGCGTAATCACTTGACGCCCTTCAATCCCGA 28276 31 100.0 35 ............................... TTGATGGCATTGTCGATCATGGTCAACTCCTGTTG 28342 31 100.0 34 ............................... GCTTGAACAAGGAGATCTTCAATGAATAACCGTG 28407 31 100.0 39 ............................... CGTCGCTCGAAATTGACTCGCTCACGGCTGGTCTCCATC 28477 31 100.0 33 ............................... CGTCGGGTCTCGCAGCCGCAGCCGGATACCGGG 28541 31 100.0 34 ............................... CAGGAGATCGCGCGCGCAGAGGCGACCGGCGACA 28606 31 100.0 33 ............................... CTACCGCGCCACCGCTCTGGATATACCAGCCAG 28670 31 100.0 34 ............................... ACCCACTCTGTTTGCCGCACGTTGTCGCCGAGCG 28735 31 100.0 36 ............................... ATCTCCTTCAGCTATGACGTCGTCCACAGTCGTGAC 28802 31 100.0 34 ............................... ATTCCGGGCTTTAAACCGCACTGCCTCCGAGCTA 28867 31 100.0 34 ............................... CATCGTGGTCACTCCTTCCATTGCGCTGCAATGG 28932 31 100.0 34 ............................... GCCCCTCAAGATATGGTTGGCTATTATCTTTGTC 28997 31 100.0 36 ............................... GCCGGCACGTTGGCGGTCTTGACCAGTTCGCCGCCC 29064 31 100.0 35 ............................... GGCTTGAACGCGGTAGCGCCGGCATAGCTGCGCGG 29130 31 100.0 33 ............................... AGCGTGCGGGATGTCGTGGCAACCGATAACGGC 29194 31 100.0 33 ............................... TAGCAGGCAAGACAAAATTTTGTTGACAGGCAA 29258 31 100.0 35 ............................... TACAAGCAGTTGTCGCTCGCGAACCACGTCAACGG 29324 31 100.0 34 ............................... AGTGAGTTGGAGCGGAATAACCTGCCGTTTGCTG 29389 31 100.0 34 ............................... TTCTGGCCGGCGCGCTGATCGCGCTGCTGGCCGC 29454 31 100.0 36 ............................... TTGGTGAAGGCCAGCGGCACGAACGGCGACTCGATG 29521 31 100.0 33 ............................... TGGGGCACCTCCTCGGTCGCGACCTTGCGCAGC 29585 31 100.0 35 ............................... TCTTTCTCGCTCACGTGATCACCTCAAAGATGGCG 29651 31 100.0 35 ............................... ACGGTCCCCTCCACGGATTTTTGGCCGGTGATGAC 29717 31 100.0 35 ............................... ACGCTGGAACAGTACGTCGAGGCGGGCATCATGAC 29783 31 100.0 37 ............................... TCGCAGTCGCAGCAGGAAGTCAATCAGGCGCTCAACA 29851 31 100.0 36 ............................... GGGCATTATCCATCAGCAATGGTTGGATCGTTGCGC 29918 31 100.0 36 ............................... GGGCTAATTACGGGAGTTATGGAATGGATATTGGTC 29985 31 100.0 35 ............................... TGGCAGTCGACCAGGCCGTCGTCCTCGCTACTCCG 30051 31 100.0 34 ............................... GCATAGCGTCTTCAATGCGCGCTTGATTGCGCCG 30116 31 100.0 33 ............................... TGCACCCTCGCCCGGTACTCCGATGCTGATATC 30180 31 100.0 33 ............................... CCATGAGGCAGGACGAGGAAAAGCAATCCTTGG 30244 31 100.0 35 ............................... GTTTTGTCGGATATGGCTTATGACGATCAGGGTAA 30310 31 100.0 35 ............................... GACAACCCGGTCGCGCTGGCGCATGTGCCGTACCT 30376 31 100.0 36 ............................... GTCTATGACGACGACGCCAGCTTCTACGACGTGCAG 30443 31 100.0 36 ............................... GCATGTCAGAGTTTCCTCCTTTTATGGGCTAGGCGG 30510 31 100.0 35 ............................... CCGTTACACCCTACCCGTTAGCGGTAGTCTTGGTC 30576 31 100.0 35 ............................... CCTGATGGTGCGCGGCATGACCGGGCTGTTGCAGG 30642 31 100.0 34 ............................... CGCTCAAAGCGATGACATAGGTCATTGCGCTGGG 30707 31 100.0 36 ............................... GTCTTGCAGTTCGTCGAGTGTCATGGCAGTGTGATG 30774 31 100.0 36 ............................... TGCATCTATCCCTAGTACGTTTGCTAGGTCGATGAT 30841 31 100.0 36 ............................... GCGCGTTACTGTGACGCGCGTGCGGCCGTTACGCCG 30908 31 100.0 35 ............................... TCTTCCAGCAACGCCGTCTCGGTCTCGCCTAGGGT 30974 31 100.0 35 ............................... CAGCTGCGACGCCAGCAAGCGCAGGTGGAGGCGGG 31040 31 100.0 34 ............................... AAGTACATTAAGATGAAATGGCACGAGCAAATGA 31105 31 100.0 35 ............................... CGCTACCGCACCCGCGTGCCGCTCGCGCTCGAGTT 31171 31 100.0 33 ............................... TCCAAGTCGTGGATGGTGTGGTCGGCGGGCAGC 31235 31 100.0 36 ............................... TTCATGCCTTGATCCTGACCAACGAGGCTGTCCAAG 31302 31 100.0 35 ............................... TTCTGCGACATGATCCACACCACCGATCAATTCCA 31368 31 100.0 36 ............................... GGGTCAAACTCGACCACGGACAGGCCGTTGCCGATG 31435 31 100.0 33 ............................... TTGACGTAAACACGTAATGAGGCAATTACGCTC 31499 31 100.0 36 ............................... GACTATGGCTATGCCCTGACGGTCCACAAGTCGCAA 31566 31 100.0 36 ............................... TTGTTTCCTCGTTGTGACCGGGATCGCCCCGGGGTA 31633 31 100.0 34 ............................... GGGTTCGGCAGCGCGCCCTTGAGCATCTTGCGAA 31698 31 100.0 37 ............................... GCCCTGAAGGACATCAAGGAGCTGATCGCGGAGGTGG 31766 31 100.0 35 ............................... GTGTTCATGATCGGGACCTCAGTGGAAGGGCGAGT 31832 31 100.0 34 ............................... GCTGCCGGCGACATCGTGCTGGCGTCCGGCTTTG 31897 31 100.0 35 ............................... AGCTCGTGCAGCTTGGCGGCGCAGGTCGACAGCTT 31963 31 100.0 33 ............................... ACTTCTTCGGCGACGCAATGCGCTAAAGCCTTC 32027 31 100.0 34 ............................... CGTTAGCGATTTTTCCGCCGCGCTCAGATTGCTT 32092 31 100.0 34 ............................... TTGACGTAGCACATGCCGGCGAACCACTCGGGCG 32157 31 100.0 34 ............................... CTGCGTGGCTCATCAAGTAAGGTCGTGTCCGGCA 32222 31 100.0 36 ............................... TGGCGCAGCAGGTCGCGCATGACGCCGACCTTGATC 32289 31 100.0 36 ............................... AGTTGAGCTGGTCATTTCGTCGCCAGTGAATTGCAC 32356 31 100.0 36 ............................... CCACTACGGATGCGCTTGTAAGTTACGGGGATCATG 32423 31 100.0 35 ............................... GGCTTGAACGCGGTAGCGCCGGCATAGCTGCGCGG 32489 31 100.0 35 ............................... CTGCCGGGCCTCATACTCCGCGGCAAGCTCTGGGT 32555 31 100.0 35 ............................... TCGATCCTGTCAGGGATGGGCGCGGCGTGGATGAT 32621 31 100.0 36 ............................... ACGATCACGGGCGCCAACACGGATTCGCCACTGAAC 32688 31 100.0 35 ............................... ATGATTGGTTAGGGCCAGCAGCAGGCCCGTATGCA 32754 31 100.0 35 ............................... GGTATAGCTCCACACACCGTCGCGCCGGATAAGCG 32820 31 100.0 35 ............................... TTGCTATTATTAAGTCGTACCCAGCAACAACCACA 32886 31 100.0 35 ............................... GACAGTAAGCTACAGATAGCCTAGCATCCTCCCTA 32952 31 100.0 34 ............................... ATGATTTCAGGGCATGTGTCCCTGTTTAACAGCC 33017 31 100.0 34 ............................... GACTGTGCTCATCCTGAGCCGTGTCTCTTTGACG 33082 31 100.0 35 ............................... CAGCCGGGCAGCAAGGAGCCACACGGAGCGGCAGC 33148 31 100.0 35 ............................... AGCGCCCCGATTACTACGATCAGCGCACAGACCAA 33214 31 100.0 33 ............................... CTGCGCTGTCCAAGTATCACAGGTTGTTGCCGC 33278 31 100.0 34 ............................... AGTGTCTGCGGTCAGTGTTGCGCCTGCGGCTTGA 33343 31 100.0 35 ............................... GACCGTGCGAACCACGGCCTGGCCGGCTCGGAAAC 33409 31 100.0 36 ............................... GCGCCAGTTGTGCGGACGCTTGGCGCGCTGCTGCGC 33476 31 100.0 35 ............................... GCCAGTCGCCTTGCCGACTTCATCGCGCATCTGGA 33542 31 100.0 35 ............................... GTGCTGTTCCACCGCGACCGCGATCAACTCGCCGC 33608 31 100.0 34 ............................... GTCTTGGGTGGTCTGCTTCGCCAGCTTGAAGTTG 33673 31 100.0 33 ............................... CCTTACAGGCAGTTGACAGCGGAGACGATCATC 33737 31 100.0 35 ............................... AAGTCCCGGCCCAGGTGGACGAAGGGGACGTTGGC 33803 31 100.0 34 ............................... CCTGCAAGCTGGTGAAACCGATACATCAATCGGC 33868 31 100.0 33 ............................... ATCGTGGCTCCGAAGAAAAGGGCCACCGCCGAC 33932 31 100.0 34 ............................... ATGCCCAAGAACGCCGCTCACGGCATGATCGAGC 33997 31 100.0 35 ............................... ATGGACGATCTCGAGGTCTTTGATCCGTTGATCGA 34063 31 100.0 36 ............................... CTGCTGTTTGGCTCCGCTCGGCAGTACCTCAGCGAG 34130 31 100.0 33 ............................... GATATCGGCGTCGGAGTACCGTGCGAGGGTGCA 34194 31 100.0 35 ............................... GTTGAATGCTGTTTCTCGGCGCTCAAGATCAGCGC 34260 31 100.0 35 ............................... CGTGGCACTTGCCAGCAGATCAGCAGCCGTCTCTG 34326 31 100.0 34 ............................... CCAGACCCCGCGTGCGATGCCAGGAGGCAGTGCC 34391 31 100.0 35 ............................... ACGAAAAGGGCAAAGAGCAAGGCGACACGGATAGC 34457 31 100.0 34 ............................... CCTGTTCTTTGGATTTCTCGGAGCCTGTTGCGGC 34522 31 100.0 34 ............................... GTTCGAGTCCGGCGCTGCCCTCACTCCTGCTATG 34587 31 96.8 36 .......T....................... GTCAAGAACATGCAGCCCACGCTGGAGGTGAAGGGG 34654 31 100.0 35 ............................... CTTTGTGCCGGTATGCCAACCCGCACCGTCCGCCC 34720 31 100.0 33 ............................... GACCTACGCGTGCTGAGCGATGCCAGCGCACTG 34784 31 100.0 36 ............................... ACAGCGCGTCCTACACCAGATGGCACTTATTTACGA 34851 31 100.0 34 ............................... CCGGAAGGCCTCCGGGAATCCCCGGAGGCCCCCG 34916 31 100.0 35 ............................... CGGGTCAACGTTCATCTTTGATTCGTCCATTAGCT 34982 31 100.0 35 ............................... AACCAGATCAGCACCAGCAAAATTACAACGGCCCA 35048 31 100.0 34 ............................... GCGTCATGATGTTAGAGGCAACGTTGCGCCAGCT 35113 31 100.0 35 ............................... TGTGACAGTCAAGCCCCGCCGAAAGGCGGGGTCTC 35179 31 96.8 36 ..........................A.... TTCATGACCGCATAAGCCAAGAGCGGGCCAACCATC 35246 31 100.0 34 ............................... ATGCAGGGATGGCCGGGCACGGCCATCTGGTGGA 35311 31 100.0 35 ............................... TATAAGCGCGTCCATCAAGCTGTGCGTTATAGAGT 35377 31 100.0 35 ............................... CAGGCGCCCACGTGAAGCGGCGAGGCGCGATGCGG 35443 31 96.8 33 .................A............. GCGCTGATCCAGACGAGGACGGCAATTGCCGAG 35507 31 100.0 33 ............................... CGCAGCGGCGTGGCAGTACTACATCCGCACCTG 35571 31 100.0 33 ............................... TGTGACAGTCAAGCCCCGCCGAAAGGCGGGGTC 35635 31 100.0 35 ............................... GCCAGTGATGATAGTGATGGGGTGCATGGCAGGGG 35701 31 100.0 33 ............................... GCTTCCACGGTACGCCGCCGATTGATGTGGAGA 35765 31 100.0 35 ............................... ATCTACCGGATTGCAGATGCCGTTGTGTGGCTGAT 35831 31 100.0 35 ............................... ATCTACCGGATTGCAGATGCCGTTGTGTGGCTGAT 35897 31 100.0 33 ............................... AGCCAGGCCAAGGGCGGGCAGCCACGCTCCCGC 35961 31 100.0 36 ............................... ATCGAGCCCCCACGCGCACGTATTCCTGGACAGCCT 36028 31 100.0 40 ............................... GCGCAGCAGGCGCTCGGCGTCGCGCATCTGCGCGTGTCAC 36099 31 100.0 35 ............................... GAATGATAAAAAGCACGCACGAGCGGTCTCCACAG 36165 31 100.0 34 ............................... GCCGATGTGCTGGCATGGCGACTGGCGGTGGAAT 36230 31 100.0 35 ............................... TGGTACATGATGTCCCCTAATCAGATTGCGAGCGT 36296 31 100.0 34 ............................... CCTGTACCTGTGGGCATCAGCACAAGCGGGTGGG 36361 31 100.0 36 ............................... TCTGTGCCACTGCACCGCGTCCAGCTATCATCAGCG 36428 31 100.0 36 ............................... AGGATGCGCCGCATGGTCTTGCCGCCGAACGCCTTG 36495 31 100.0 33 ............................... GGGAAGATTCGCCCGATTGACGACGAGGCCCGC 36559 31 100.0 35 ............................... TTGATCCAGCGTCTTGGCCGCTACGTGTGCCAGCA 36625 31 100.0 34 ............................... TGGCGAGCTATTAAGGGGGTGGGGGATATCACTA 36690 31 100.0 33 ............................... TCCTCCGGCTCCGCAATTTTAAGATATTTCCAC 36754 31 90.3 91 ..........T.........AA......... GCCGACTGGCGCTTGCCGGAGGTTGAGGAACTGATCATGCCCTTGGGGCGGGGAACGGGACGTGCTCCGTGATTCCCGGCCTTGCCCTTGG 36876 31 83.9 34 .G.G......T.....G....A......... CTCGAAAGGTCGCTGGCTTCGCTGCTGCACCTGG 36941 30 83.9 35 .A.G.............T....-......G. CACGGGCGAGCACCGGGAAGATTACGGATGCAATG 37006 31 96.8 39 ..................C............ AATCGTGGGCATCGTGAAGAAGCTCGCTTTATCGAAAGT 37076 31 83.9 0 ...G.....G.AT.....C............ | ========== ====== ====== ====== =============================== =========================================================================================== ================== 136 31 99.5 35 GTCACGCCCTCGCGGGCGTGGGAATTGAAAC # Left flank : CATTTCTCTGGAAATAACCTGGGCGCTCGGTCATGATGGTGTTGGTCAGCTATGACGTCAGTACCACTTCTCCTGGCGGCGACCGACGATTGCGCCAAGTCGCCAAGGCTTGTCGTGATCTTGGACAACGTGTTCAATATTCGGTCTTCGAGATCGAAGTCAATCCAGCGCAATGGGTCGCGCTACGGCAGCGACTGTGTGACCTGATCGACCCCGGGCTGGACAGCCTGCGTTTCTACCAACTGGGTTCCAACTGGGAGCGGAAAGTCGAGCACGTTGGCAGCAAACCCGCCCTCGACCTGAAAGGTCCGCTGGTCTTCTGAGCGCGAACCACAAGTGTCCTGGCTAAACCCGGGACGTTCGCACAACTCTAACCCCTTGTTCTTACGAACCGACAAGGCGTGAGTCCCCAGCTAAGGGGAACGGTCGCATGTCCCCGCCGCACATTCGCGGAAAAGCATTTTTTTCTATTTGTGGATCAGTGGTTTATGATGGTAGCG # Right flank : CTCGCCACGCCGGGCGTGCGATGTACTTGTCAGTGGGCGCGTACCCGCCCGCAAGGGCGTGACTCGATGGCATCCAGCATCGGCCAGGGATTCACGGTTGTCGGGGAAGCGATCGGGTCAATCTCGTGAAAGAGGCCGGCGCGGTAGCGGTTGGGCCGCGCTACCGCCTGGCGGGGCGGTTTATTTGGATTTGATCGCCACCGCCGACAGGCCGCCGTTGGCGAGTTTCTGTTTGGCGTCGGCCAGCTCGGTGGCGCTGGCGTAGGGGCCCATGCGCACGCGGAAGACGGTCTTGCCGCCGATGTCGGCCGATTCCACCCGTGCGTTGAGGCCGAGCAGGGCGATTCTGGCCTTGGTCGCTTCCGCATCGCCATTGGCCTGGAAGGCGCCGGCTTGCAGGATGTACGGGGTGGCGTTGGCCGGCCTGGCGGCGGTTTCGGCGCGCGCGGCCTGGGAGGCGGGCGGCGCGGGTGGCGGTGCGACCGGCGGGTTGTTGCCAG # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCCCTCGCGGGCGTGGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA //