Array 1 612214-614747 **** Predicted by CRISPRDetect 2.4 *** >NC_017448.1 Fibrobacter succinogenes subsp. succinogenes S85, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================================ ============================== ================== 612214 48 100.0 29 ................................................ GCATATCTGAATAAACTAAACAACAAAAA 612291 48 100.0 30 ................................................ TATTTTCAGTGTAGGTCATGATTTACCCCA 612369 48 100.0 30 ................................................ TGTAGTTAATACCATTATCGCTAAAATCAA 612447 48 100.0 29 ................................................ AATAATACTTTGCAATTGTCAATAGAAAA 612524 48 100.0 30 ................................................ AGCATTTGGAATTTCTTTGAGTTGTGTTTC 612602 48 100.0 30 ................................................ TAATTTGATTCGCAATTGCACCGCTAGACG 612680 48 100.0 30 ................................................ TAGATATTTTTGACAATTTGGATTGTATCT 612758 48 100.0 30 ................................................ TTTCTTTTGTGTAGTTCATGGTTTTATCCT 612836 48 100.0 30 ................................................ AGGTCTGCTGGTCTTCCGGGAAGAGCATCT 612914 48 100.0 29 ................................................ GGAACGCGCACCGTTTGACGCAAAGAAAG 612991 48 100.0 30 ................................................ GATGCTCGGCATCTTGCCGAAAGGCCGAAG 613069 48 100.0 29 ................................................ AAAGTTTCTCCCAATAAACGCTACAAAGA 613146 48 100.0 30 ................................................ GCTGGCCCTCTTGGTGCTATGGCCGCAGGC 613224 48 100.0 30 ................................................ GCAAGTATGGTAATATGTATGACCACGGCG 613302 48 100.0 30 ................................................ AGTATTCGGACTATATCGGGCGGGCTCGTT 613380 48 100.0 30 ................................................ TACAAAGATAGGATGTTGCATATTTATTAA 613458 48 100.0 30 ................................................ TTAATTTCGTCCACACCGTCAAACCTAAAC 613536 48 100.0 29 ................................................ AGAAGAGCGAGTTCACGCCGTTGTGGGTT 613613 48 100.0 30 ................................................ GCTACTGTGCAGTCATTACAAGACCGCGTT 613691 48 100.0 29 ................................................ TGGTGTGAGTCTTGGTTCTCGCTTCGCTC 613768 48 100.0 30 ................................................ GCTACTGTGCAGTCATTACAAGACCGCGTT 613846 48 100.0 29 ................................................ TGGTGTGAGTCTTGGTTCTCGCTTCGCTC 613923 48 100.0 30 ................................................ GATTAACGTTACAATCCTCCACCTTTCCTT 614001 48 100.0 29 ................................................ GGGTTGAGTGGTCCAGCTTGTTATCTACT 614078 48 100.0 30 ................................................ GGGTGGAGGCTTTAATGTCCTTAGATGTTC 614156 48 100.0 29 ................................................ GGAAGGCGATACGGATAAGTTGAACGAAA 614233 48 100.0 30 ................................................ AGTATCATGGCAATATTCTTTCGGGGCATT 614311 48 100.0 30 ................................................ GCTCAGCAGCACGAAATTACTAATAGTCCT 614389 48 100.0 29 ................................................ TATCGACTTGCGACAACGAAGCTCTTGAT 614466 48 100.0 30 ................................................ AATCTGTAAGCACTATTGGAAATATGGTCT 614544 48 100.0 30 ................................................ TGCTTGACGAAGTTGGCAATGAATGGTACA 614622 48 100.0 29 ................................................ TAAAATCCCGACGTATGTATTCATCGACG 614699 48 87.5 0 ................................A....A.G...G.CC. | G [614741] ========== ====== ====== ====== ================================================ ============================== ================== 33 48 99.6 30 GTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAAC # Left flank : AGCTTCGCTTGCCAAGTGTTATTTAGGAACAACAAGGAAATTGCTCTATCCGGAGGTGTAGGATGGACCGATTTAGCGAGTACAGAATTATGTGGATTTTGTGTTTCTTTGATTTGCCGACAGAAACGAAAATTGAGCGGCAACGGCACAGCGAATTTCGCAAAAATCTGTTAAAAGATGGATTTTCAAGATTCCAATTATCCATATATGTTCGGCATTGCGCTTCTGTGGAAAATGCAGAAGTTCATATTGCTCGAGTAAAGAGTTTTATGCCGCCAGATGGTTCAGTAAGCATTCTCTGTATCACGGACAAGCAGTTCGGGAAAATCCAGGTTTTCTACGGTCGAAAGGAAAAACCGAAGCCAAAATCAACGGGGCAATTAGAGCTTTTCCTATAAAAAACGTTCAAAAACAAGAAAAAATCGACCCCAAAAGGTCGATTTTTTCTTTTCGCAATGATACATCTAACTCGTTCATAGCTGTATAGTTACAACGAATCA # Right flank : CAAACAGCGAGGAAGGGGGCTATGTCAACTGCAATATAGATTATTTAAAGAGAAAAGGAGATGCCCCGTCAAGCGGGGCATGACATCAGGGCGAGTGGCTAAGCTAAGCCGGGGCGTTGCGGGGCGGCGTCTGAGCGCCCGCATAGAGAGGGTGATGGAAGACTCGGCAACCCGCTTTTTGACGAAAGGGGTGTACGCTCAAAGGCGTACATGACAATCCGAAGTGACTAGGTTGCCGAGGCTGCAATCAGGGGGATTCCTCCCCCATCCTTCATAAGCTATCAAAATTTTCAATAACACATTTTGACATTCCTTTTTATACCTTAAAATGCATCGGACGAAACTACTAATAAAGTAATTCTATTAGTAGCGATATTTTTTTAGTATTGGACAAAGGGTTTTGCATTCTCTATATTTGTCTCTCAAAAATGGGAGACATTCTATGGCAGTTGATTATTCTACTCTTAAAAAGGGCGGCTGGATGCGCCAGAAGCAGAAGA # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:-0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTATTGCACTAGTAAAACTAGAAAATCTGAAAGCAATTCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.75%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.60,-4.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 2 2341980-2342564 **** Predicted by CRISPRDetect 2.4 *** >NC_017448.1 Fibrobacter succinogenes subsp. succinogenes S85, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================================================================================================== ================== 2341980 37 100.0 36 ..................................... TTAAACTCTTTTGTTGCTTTGAAGGGATTAAAATAG 2342053 37 100.0 37 ..................................... TTTCATATTGTTACCTCCTAGAATTTTTCTATTCCCT 2342127 37 100.0 37 ..................................... TTTGCAATCTTTGCCATGATCTTGGTCTTAGTGTTTT 2342201 37 100.0 36 ..................................... AGAACACGCATTTCAGTATCGAGCCTTTCCTTGTCA 2342274 37 100.0 38 ..................................... CATCACTCATCTTTTTGAGTACCTCTGCAGGTACATCA 2342349 37 89.2 142 ...............................GGCA.. CTGGCGGTTGCCTGCTTGTCGGCTCGGTCATGCCCACGCAAGCGTGTTCGCGACGCTCGCCTCTGTCGCAGTAAGACTTGGAACTCTCGCAAGAGAGATTAAGACGGAGCTGGTTCCCATTCAGCAGATTCAATTGCTGATC 2342528 37 86.5 0 ..............C................GGCA.. | ========== ====== ====== ====== ===================================== ============================================================================================================================================== ================== 7 37 96.5 54 CCCTGAAAAGCATTACTCTCGCAAGAGAGATTAAGAC # Left flank : TCGGGTGCGGCTGTTGCCAACGGCCGCCTGGAACCCTTTATTTATGCAGGTTCCAGAGGGGTACTCCCTGAAAAGCATTCCTCTCGCAAGAGAGATCTTTTTTCAAAAAACAGGTTGACACTTTTGTTGTCTTTGTCGATATATGTTATGTCAGACGCTCGTTACGTTCGGCATAACATTTTACTCCTGAGGTTGGCGGTCCCGGTAAAAATCGGGGCCGTTTTTTATTTGGCAATTGAGAGCGCGGAGCCTAAAAATTCCCATTTTCACTCAAAAAAGTGTAAATTTAAGGTGTCCGGTCTGCATGGCCGGGTCGCAACTTGACATTTGTTACAGACAACATTCGTGTTACCATGCCGAAATTGAGCTAAAAACGCCAATTTTGGGTGCTTTTTAGGGTTTTGTAAAGAAAAATTAAAATTCTATTAAGTGCTTTTGCGTGCAGTTGTTACCAACGGCCGCCTGGAACCCTTTATTTATGCAGGTTCCAGAGGGGTACT # Right flank : CCTAGCGGCTGCCAGCTTGTCGGCTCGGTCATGCCCGTGCAAGCACGGTCGCGACACTCGCCTCTGTCGCAGTAAGACTTGGAAAGCGTAAAGCACTAACGTCATTGCAAGGAGTATAACGACGCGACGATCCACAACTCTCGCAAGAGAGTTTTTTTCAAAAATCTGGTTGACACTATTGTTGTCTTTGTCGATATATGTTATGTCAGACGCTCGTTACGTTCGGCATAACATTTTACTCCTGAGGTTGGCGGTCTCGGTAAAATCGGGGCCGTTTTTTTTATGTGGTTGACGTTCTTCTATATCAAAGAGATATAATGGTTGTCGGGCGCATGGGGCGTTCGGAAAAAAGAGGTAAAATATGAAAACTATTCAGCAAAGCATTTGGACTATTCCGTGGGGCGACATCCCGACTCCCCCGAAAATTTCATTTTTTGAGTCGGCGCTTTCATTCTAAAACGATAAAAACAGAAGGGTGCAATGTTGCACTGTCAAACCTT # Questionable array : NO Score: 4.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:-1.87, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTGAAAAGCATTACTCTCGCAAGAGAGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 3 2343483-2344128 **** Predicted by CRISPRDetect 2.4 *** >NC_017448.1 Fibrobacter succinogenes subsp. succinogenes S85, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ================================================================================================================ ================== 2343483 26 100.0 48 .......................... TAAGACTACTTTGCTTCGCAGCGTTGCTTATGGAAGAGCGTACCCCTG 2343557 26 96.2 49 .........A................ TAAGACCTCTACGCTTATTATAGATAATGAAGTTCTTAGGTTCTCCCTG 2343632 26 96.2 48 .........A................ TAAGACCCTTACGCCAGTAAAGTGCAGTGTTAACGTTAAACAACCCTG 2343706 26 100.0 112 .......................... GGCAACCTTGCGGTTGCCTGCTTGTCGGCTCGGAAATGGTCCCGCAAGCGGTCCCGCTTCGCTCGCCTCTGTCGCAGTAAGACCAAGATGTCATTCTGGAGCCGAAGGCGAT 2343844 26 80.8 49 .G..T.CA.A................ TAAGACTTTTCTAGCCCCTCCGCTATATGCTTTTCGAACCTTTCCCCTG 2343919 26 100.0 80 .......................... TGCAGCTACGCCGCCAAATGGTCGGTTCGGTCATGCCGGAATGCAAGCATTCCGTCGCGACGCTCACCTTATCCATTTGT 2344025 26 80.8 50 ..G.CTC..T................ TAAGACTTCTTGAGACGACGCACATACTCGCCTACGTTATGGACACCCTG AA [2344035] 2344103 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ================================================================================================================ ================== 8 26 94.2 62 AAAAGCATTCCTCTCGCAAGAGAGAT # Left flank : CGAAAATTTCATTTTTTGAGTCGGCGCTTTCATTCTAAAACGATAAAAACAGAAGGGTGCAATGTTGCACTGTCAAACCTTAACGGAGGATACCTCAATGAGACCGATTGTCGCATCTGTTGATGAAACCGAAATCGAAATCCTTGCAAAACACTGCTAATCAACGAATAAAATTTCAAACTAAAGCTTTAAACCCCGGTGTCAAAAACCGGGCCTTTTTTGTTGTCAATTGGGGATGCGGAGCCTAAAATTCTCCATTTTCACTCAAAAAAGTGTAAATTTAAGGTGTCCGGTCTGCATGGCCGGGTCGCAATTTGACATTTGTTACAGACAACATTCGTGTTACCATGCCGAAATTGAGCTAAAAACGCCAATTTCGGGTGCTTTTTAGGGTTTTGTAAAGAAAAATTAAAATTCTATTAAGTGCTTTTGTGTGCAGTTGTTACCAACGGCCGCCTGGAGCCCTTTATTTATGCGGGTTCCAGAGGGGTACTCCCCTG # Right flank : TGACAATCTTCGATTGTCTGCTCCTAGGCTCGGCAATGGAAATGCAAGCATTTCCGCTGCTCTCGTCTTACGTCGCAGTGCGAGCCTGGCGGTTGCCTGCTTGTCGACTCGGAAATGGTCCCGCAAGCGTGTTCGCGACGCTCGCCTCTGTCGCAGTAAGACTAAAACAGGGTCCGTGAACCTGCCGAAGGGCCGCGAAGACTCTCGCAAGGGAATTTTTTTCAAAATTCTAGTTGACACTTTTGTTGTGCATAGCGATATAGTGTATGTTGAGTGGCTCCGGTGAAAACCGGGGCCGTTCGTGTTTTTGGTGGTTGACATTTTCCCAAAACGAAAAGACATAAAGGTTGTAGGGGTGCAAAGCCCCGGACACAACTCAAAAAATGGGGAATCTATGCTATGCATTTATACGTGACCGAACAGGGGACCCGCCTGGGGAAAAATGGCGGGCATTTGGTGGTCCAGCGCGACGGCTGTACCATAGACGATATTCTTTTGTC # Questionable array : NO Score: 4.28 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:-1.66, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAAAGCATTCCTCTCGCAAGAGAGAT # Alternate repeat : AAAAGCATTACTCTCGCAAGAGAGAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.69%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 4 2346550-2346092 **** Predicted by CRISPRDetect 2.4 *** >NC_017448.1 Fibrobacter succinogenes subsp. succinogenes S85, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ==================================================================================================================================================== ================== 2346549 27 81.5 148 G.................TT...C..C AGAGAAACATGGCGTTCCCGGCACAGGACCGAGATGACATTGTGAGGTATATTCCGCTTTTCTTTAGTCTTACTGCGACAGAGGCGAGCGAAGCGGGACCGCTTGCGGGACCATTTCCGAGCCGACAAGCAGGCAGCCGCCAGGCTGC TCT [2346529] 2346371 27 96.3 47 .....................G..... CAGGGGATGAAGCCTATTCTCCGGTTGTCGAGCTCCATTTGAGTCTT 2346297 27 85.2 79 .................A..G.G.C.. ACAAATGGATAAGGTGAGCGTCGCGACGGAATGCTTGCATTCCGGCATGACCGAACCGACCATTTGGCAGCGTAGCTGC TT [2346279] 2346189 27 100.0 44 ........................... CAGGGGGAGAAGAAGGTTGGGGCCAAAAGAAGGATCGACGTCTT 2346118 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ==================================================================================================================================================== ================== 5 27 92.6 80 AATCTCTCTTGCGAGAGGAATACTTTT # Left flank : CCCCAATTGACAACAAAAAAAGCCCGGTTTTTGACACCGGGGTTTAACGCTTTAGTTTGAAATATCATTCGTTGATTAGCAGTGTTTTGCAAGGATTTCGGTTTCATCGACAGATGTGACAATCGGTCTCATTGAGGTATCCTCCGTTAAGGTTTGACAGTGCAACATTGCACCCTTCTGTTTTTATCGCTTTAGAATGAAAGCGTTGACTCAAAAAATGAAATTTTCGGGGGAGTCGGGATGTCGCCCCACGGAATAGTCCAAATGCTTTGCTGAGTAGTTTTCATATTTTACCTCTTTTTTCCGAACGCCCCATGCGCCCGACAACCATTATATCACTTTGATATAGAAGAACGTCAACCACATAAAATAAAAAACGGCCCCGATTTTTACCGGGACCGCCAACCTCAGGAGTAAAATGTTATGCCGAACGTAACGAGCGTCTGACATAACATATATCGACAAAGACAACAAAAGTGTCAACCTGTTTTTTGAAAAAA # Right flank : CAGGGAGTACCCCTCTGGAACCCGCATAAATAAAGGGTTCCAGGCGGCCGTTGGTAACAACTGCACGCAAAAGCACTTAATAGAATTTTAATTTTTCTTTACAAAACCCTAAAAAGCACCCGAAATTGGCGTTTTTAGCTCAATTTCGGCATGGTAACACGAATGTTGTCTGTAACAAATGTCAAGTTGCGACCCGGCCATGCAGACCGGACGCCTTAAATTTACACTTTTTTGAGTGAAAATGGGAAATTTCTGGGTCCGCTACAGCACCTTGAAGGCGGGATTTTCAATACGCTTTCCGCAACCGACTATACGCACGCCTTCGTCAGCCCGCGCGTCAATCGGGTACAGCCTCACCGAATCCGTATCAGGATCAATAATCTTTTCGGCCTCGTTTTCAAAACTCGCCACCTGCACCGAGTCCAAGAACGACTCGAATACCGACTTCTGCACACGAAACCCAGTCGCAAGGCACAGCTTAACCATCCTCCCGCGGCGGC # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.63, 5:0, 6:0.25, 7:-3, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCTCTCTTGCGAGAGGAATACTTTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.96%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.64 Confidence: LOW] # Array family : NA // Array 5 2348830-2349487 **** Predicted by CRISPRDetect 2.4 *** >NC_017448.1 Fibrobacter succinogenes subsp. succinogenes S85, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================================================= ================== 2348830 32 100.0 42 ................................ AAGACTCATTACGAGCCAGAGCTGTCATCGGGCCGAGGTTCC 2348904 32 100.0 41 ................................ AAGACTTGAGTCTGATTCCATTTTCATAGAAGAGACTTTCG 2348977 32 100.0 42 ................................ AAGACGCACTTGATTTAAAGTTAACATTCTTTACAAATGCAA 2349051 32 100.0 41 ................................ AAGACTAACTCCTTCAGATCCTTTAAGAAGGAATTCTTTCC 2349124 32 100.0 42 ................................ AAGACTCCCCACATGCGGATCTTCTCATTGAGAAAATCGTCA 2349198 32 100.0 44 ................................ AAGACCCAGATGTAAAGTAGCCGTAAGCGAATCCACCACTATGT 2349274 32 93.8 73 ..............A................G GCAGCCTAGCGGCTGCCTGCTTGTCGGCTCGGAAATGGTCCCGCAAGCGGTCCCGCTTCGCTCGCCTCTGTCG 2349379 32 62.5 45 .AG.A.G.CCTGGAA..............C.. AAGACTGAAATTTCACCTGGGCATACGGTACTCATAATTATTTGC 2349456 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ========================================================================= ================== 9 32 95.1 46 CCCTGAAAAGCATTCCTCTCGCAAGAGAGATT # Left flank : TCCCCCGAAAATTTCATTTTTTGAGTCGGCGCTTCCATTCTAAAAAACGATAAAAACAGAAGGGTACAATGTTGCACTGTCAAACCTTAACGGAGGATACCTCAATGAGACCGATTATCGCATCTGTTGATGAAACCGAAATCGAAATCCTTGCAAAACACTGCTGATCAACGAATAATATTTCAAACTAAAGCGTTAAACCCCGGTGTCAAAGCCGGGCCTTTTTTGTTGTCATATGGGTATGCGGAGCCTAAAATTTCCCATTTTCACTCAAAAAAGTGTAAATTTAAGGTGTCCGGTCTGCATGGCCGGGTCGCAACTTGACATTTGTTACAGACAACATTCGTGTTACCATGCCGAAATTGAGTTAAAAACACCAATTTCGGGTGCTTTTTAGGGTTTTGTAAAGAAAAATTAAAATTCTATTAAGTGCTTTTGCGTGCAGTTGTTACCAATGGCCGCCTGGAACCCTTTATTTATGCGGGTTCCAGAGGGGTACT # Right flank : TGCAGCCTACGGCTGCCTGCTTGTCGGCTCGGTCATGCCCACGCAAGCGTGTTCGCGACGCACGCCTCAGTCGCAGTAAGACTAGGAGCTCTCGCAAGAGAGATTGCAGCTACGCTGCCAAATGGTCGGTTCGGTCATGCCGGAATGCAAGCATTCCGTCGCGACGCTCACCTTATCCATTTGTAAGACACTTTAACTCTCGCAAGAGAGATTAAGACTTACGTCTGTAGAGACTTTTAATCCATCTCATATCCCCTGAAAAGCATTCCTCTCGCAAGAGAGATCTTTTTTCAAAAAAAACAGGTTGACACTATTGTTGTCTTTGTCGATATATGTTATGTCAGACGCTCGTTACGTTCGGCATAACATTTTACTCCTGAGGTTGGCGGTCCCGGTAAAAATCGGGGCCGTTTTTTATTTTATGTGGTTGACGTTCTTCTATATCAAAGTGATATAATGGTTGTCGGGCGCATGGGGCGTTCGGAAAAAAGAGGTAAAAT # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.35, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTGAAAAGCATTCCTCTCGCAAGAGAGATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0.37 Confidence: LOW] # Array family : NA // Array 6 2350542-2351130 **** Predicted by CRISPRDetect 2.4 *** >NC_017448.1 Fibrobacter succinogenes subsp. succinogenes S85, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================================================================================================= ================== 2350542 37 100.0 36 ..................................... TGAGATCAATTTGATGGTTAATCTTATCCATCTCGT 2350615 37 100.0 39 ..................................... CGTATACTCTTCTTGGTGCAAAGAAGAAGGAAAATACGG 2350691 37 100.0 38 ..................................... TCAAAGAATTTAGCTATAAGAGGTAACTGATCCCAATA 2350766 37 100.0 38 ..................................... CCTCAGCTTGCGAGTCATACTCTACAAGAGAATTCGTA 2350841 37 100.0 38 ..................................... CTTCAGCTTGCGAGTCATACTCTACAAGAGAATTCGTA 2350916 37 89.2 141 ...............................GGCA.. CTGGCGGTTGCCTGCTTGTCGGCTCGGAAATGGTCCCGCAAGCGGTCCCGCTTCACTCGCCTCTGTCGCAGTAAGACTTGGAGCTCTCGCAAGAGAGATTAAGACTCCTGAGAAGTTTGGTTAGACGGACGCTGCTTGAAA 2351094 36 91.9 0 ..............A.................C.-.. | G [2351126] ========== ====== ====== ====== ===================================== ============================================================================================================================================= ================== 7 37 97.3 55 CCCTGAAAAGCATTCCTCTCGCAAGAGAGATTAAGAC # Left flank : CCCCGAAAATTTCATCTTTTGAGTTGACGCATCCATTCTGAAAACCGATAAAAAGACAGAAGGGGGCAATGTTGTACTGTCAAACCTTAACGGAGGATACCTCAATGAGACCGATTGTCGCATCTGTTGATGAAACCGAAATCGAAATCCTTGCAAAACACTGCTAATCAACGAATAAAATTTCAAACTAAAGCTTTAAACCCCGGTGTCAAAAACCGGGCCTTTTTGTTGTCAATTGGGGATGCGGAGCCTAAAATTCTCCATTTTCACTCAAAAAAGTGTAAATTTAAGGTGTCCGGTCTGCATGGCCGGGTCGCAACTTGACATTTGTTACAGACAACATTCGTGTTACCATGCCGAAATTGAGCTAAAAACGCCAATTTTGGGTGCTTTTTAGGGTTTTGTAAAGAAAAATTAAAATTCTATTAAGTGCTTTTGCGTGCAGTTGTTACCAACGGCCGCCTGGAACCCTTTATTTATGCAGGTTCCAGAGGGGTACT # Right flank : CCTGGCGGTTGCCTGCTTGTCGGCTCGGAAATGGTCCCGCAAGCGGTCCCGCTTCGCTCGCCTCTGTCGCAGTAAGACCAAGATGTCATTCTGGAGCCGAAGGCGATAGAATCCATACTCTCGCAAGAGAGTTTTTTTTCAAAAATCTGGTTGACACTTTTGTTGTCTTTGTCGATATAATTCATGTCAGGCGCTCATTACCGTCTGGCTGAACATATGTACCTCCTGTGGTTGGCGGCTCCGGTGAAAATCGGGGCCGTTTTTTTATTTTATGTGGTTGATGTTCTTCTATATCAGAGAGATATAATGGTTGTCGGGCGCATGGGGCGTTCGAGAAAAAAGAGGTAAAATATGAAAACTGTTCAGCAAAGCATTTGGACTATTCCGTGGGGCGACATCCCGACTCCCCCGAAAATTTCATTTTTTGAGTCAACGCTTCCATTTTAAAAACGAAAAGACAGAAGGGTGCAATGTTGCACTGCCAAACCTTAACGGAGGAT # Questionable array : NO Score: 4.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-1.85, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTGAAAAGCATTCCTCTCGCAAGAGAGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.20,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 7 2352033-2352216 **** Predicted by CRISPRDetect 2.4 *** >NC_017448.1 Fibrobacter succinogenes subsp. succinogenes S85, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 2352033 37 100.0 37 ..................................... AGTTATATTTGTCAAAGTCTGGAGGAAGTGTAGTTTT 2352107 37 100.0 36 ..................................... CTTTCTAATTTCCTTACGGCGTCGTCTAGTGAATTC 2352180 37 91.9 0 ................................GCA.. | ========== ====== ====== ====== ===================================== ===================================== ================== 3 37 97.3 37 CCCTGAAAAGCATTCCTCTCGCAAGAGAGATTAAGAC # Left flank : CTCCCCCGAAAATTTCATTTTTTGAGTCAACGCTTCCATTTTAAAAACGAAAAGACAGAAGGGTGCAATGTTGCACTGCCAAACCTTAACGGAGGATACCTCAATGAGACCGATTATCGCATCTGTTGATGAAACCGAAATCGAAATCCTTGCAAAACACTGCTGATCAACGAATAAAATTTCAAACTAAAGCTTTAAACCCCGGTGTCAAAAACCGGGCCTTTTTTGTTGTCAATTGGGGATGCGGAGCCTAAAATTTCCCGTTTTCACTCAAAAAAGTGTAAATTTAAGGAGTCCGGTCTGCATGGCCGGGTCGCAACTTGACATTTGTTACAGACAACATTTGTGTTACCATGCCTAAATTGAGCTAAAAACGCCAATTTCGGGTGCTTTTTAGGGTTTTGTAAAGAAAAATTAAAATTCTATTAAGTGCTTTTGTGTGCAGTTGTTACCAGCGGCCGCCTGGAACCCTTTATTTATGCGGGTTCCAGAGGGGTACT # Right flank : CCTGGCGGCTGCCTGCTTGTCGGCTCGGTCATGCCCGTGCAAGCACGGTCGCGACACTCGCCTCTGTCGCAGTAAGACTTGGAGCTCTCGCAAGAGAGATTATGACCGAAGATCCTGAAGCCATTCGATGTAGTCGTCCGAAACCCTGAAAAGCGTTCGCTCTCTTGCACTTTTTTTCAAAAATCTGGTTGACACTATTGTTGTCTTTGTCGATATATGTTATGTCAGACGCTCGTTACGTTCGGCATAACATATTTACTCCTTAGGTTAGGTTGGCGGTCCCGGTAAAAATCGGGGCCGTTTTTTTTATGTGGTTGACGTTCTTCTAAATCAAAGAGATATAATGGTTGTCGGGCGCATGGGGCGTTCGGAAAAAAGAGGTAAAATATGAAAACTGTTCAGCAAAGCATTTGGACTATTCCATGGGGCGATATCCCGACTCCCCCGAAAATTTCATCTTTTGAGTTGACGCATCCATTCTGAAAACCGATAAAAAGACA # Questionable array : NO Score: 5.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTGAAAAGCATTCCTCTCGCAAGAGAGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.20,-6.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA //