Array 1 154088-155245 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXNQ010000005.1 Listeria seeligeri strain J2259 NODE_6_length_160645_cov_46.1432_ID_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 154088 36 100.0 30 .................................... GAGATGAAATTACATGCTGACTATCGCACG 154154 36 100.0 30 .................................... TACTTTACCAGTTGATGTTAAGAAAATGAT 154220 36 100.0 30 .................................... ATATTCCTAATTTTGTAGTAGATAAAGCTG 154286 36 100.0 30 .................................... CCAAAAAAATGTATGAAACATATCATGAGT 154352 36 100.0 30 .................................... TAGAAGGTGCTCCTGTTTGATTACCTCTGA 154418 36 100.0 30 .................................... TTTTAAACTTACTTTTGTACCAAGCTCGTT 154484 36 100.0 30 .................................... CCCACCGCGTCAATTGCGGAGTTTAGTACT 154550 36 100.0 30 .................................... CGAAACGACACGAAAACTAACCAAAACAGG 154616 36 100.0 30 .................................... TCTCCCAGATAAAATCGCCACGTTCTATGT 154682 36 100.0 30 .................................... CGCAAGTGGCTGTTTTTGCGAATGTTTGTC 154748 36 100.0 30 .................................... AAGCGGCGAACGATAAAGCTAAAAAAGATT 154814 36 100.0 30 .................................... TTGTTCCTGGTTAAAATACACAACGTTATC 154880 36 100.0 30 .................................... TTCCTGTAAAAAATAATCACCTGCAATCAA 154946 36 100.0 30 .................................... CTGCTTGTACCAATCTCTCTCTGAAGCGTG 155012 36 100.0 30 .................................... ATCCGCAACGGAGCTTATCACGGGACAATC 155078 36 100.0 30 .................................... ATCGTCTTTATCAAAGATACCAGGTAACGA 155144 36 100.0 30 .................................... TAAAAATAATAATGAATTAACGGTTATTGA 155210 36 97.2 0 .....................A.............. | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.8 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TGATAAGCTGACTGCAACAATTAGCGAGTTGATAGGTTACGAGCTATTGGAGCACGAGCTGGATTTAGAAGAAGACGAAATTACAGTCATTGAATTATTCAAAGCTTTAGGGATAAAAATAGAAACAAAAAGCGACACCATCTTTGAAAAAATAATTGAAATTGTACAAGTTTATAAATATTTATCAAAAAAGAAGCTGTTAGTTTTTATTAATGTATGTGCTTATCTTACAAAGGAAGAATTGTTAGAACTAAAGCGGTATATTTCTTTAAATCAAGTGAAAGTTTTATTTATTGAACCTAGAAAAATAAAGGAAGTTTCACAAATAGTTTTAGATTTAGATTATTTTTTACATGTGGAAAATGACGTTTAAGAATCGAATGCTCTTTGAAAATAAAATATATTTTATTTAACCCATTAAAACAGCATTCAAAATTGAAATCTTGCTATGGATGAGTAGTGCGATTACGAAATCTTAGAGGATAAAAAAATCCTACGAG # Right flank : CAGAGAGGGTGAACTACAAAAGTAATATCCTTTACATCTGTTTTTTTCTATATATAGTGGTAAAACTAGTTGGTTTATGTTATAAATTTTCTACAAAAAGATCACCTCGTTAGTTTGTTGTTTTGTCACTTTTATTCTAACAAAGGTGGTCTTTTTTGTGTATTAAAAAATGGATTTGATTATTCCTCTCAAAAAGAAATTCTCAAATCCATTTTTCTACTTACTAGGATTTATGTCCCACCCTCTTTTTCTATACGGACTGCTGTCTAAAACAAAACACCGAAGCAATTATCAATAACACAATCGCGGGAAAAGCTAAAAGTGCAGTAATGGCAAAACATGCGCACCCAATTATGCCTAAAATATGACCAATAATAGAAATCCCAGCTTTTTTAGATTTAACTAAACCGATAATATGAATAATAAGTCCAATAGCGGCCATTACGTAAAAGAAAGCACCGACTCCGCTTGTTTGTGATCCATCTCCGCCTGAGAAACTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 150097-148835 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXNQ010000041.1 Listeria seeligeri strain J2259 NODE_1_length_389540_cov_36.5545_ID_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 150096 29 100.0 37 ............................. TTAAAATAAACATTGAGAAAACCTAATCCCCCATCGA 150030 29 100.0 34 ............................. TTAGAAGGATTAGATTTAACTAAAGAAGAACGTG 149967 29 100.0 36 ............................. AACCTTATCTAGATGGGCTAGCGGAATGGAGAGAAG 149902 29 100.0 34 ............................. AATGGGAGATAATGTATATGGGTAAAAAGTCCTT 149839 29 100.0 37 ............................. AAATTGGAAAAATGGGCTAATGACATCCGCATCATGA 149773 29 100.0 35 ............................. CATTTTAAGCTAATTTGACAATATATCTGTATAAA 149709 29 100.0 36 ............................. ATCTGTCATTTTCATGTGTTTTAACAGGTTGCAACG 149644 29 96.6 35 T............................ CTAGTTAAATCTTTGGGTAAAAAAATATCATCTGG 149580 29 96.6 40 T............................ TCAGTCGTTCGGTTGTAGTAACATAGCGCTCTACTTCTTG 149511 29 96.6 36 T............................ GCCGGAACAAAATTAGAAGTTGTGTACGGTGAACGG 149446 29 93.1 35 T...............A............ CAATATGTGGCGGATTGGATTGTCGATAGTAAACG 149382 29 96.6 34 T............................ GTGATTGAAGTTCTTCCTAAGTGTTCTACAACAC 149319 29 100.0 36 ............................. ACAGGAAAGGGAGAAACGTCATTAGCTGGGCTAAAG 149254 29 96.6 35 ........................C.... AAAAATTTAGTAACTGCGCATGATAATGCGGTCAA 149190 29 100.0 37 ............................. ACCTGAAACAGCGAGCGGGACAACGGGAAATTTCACC 149124 29 100.0 36 ............................. GAAAGTGTAGAAAATGACGACTACAAGGGCTGGGGA 149059 29 100.0 36 ............................. ATGCTTACCATACAACCCGCCATAGCCGTTTTTTCC 148994 29 100.0 36 ............................. CCTGTCCCACCGACGACGAGCGCATGCGGATTAGCA 148929 29 100.0 37 ............................. GTGGTCACAGCGTTCTTGTTGCCAGCTGGTGAGCCCC 148863 29 72.4 0 .......C.G.....CA.....CA...CC | ========== ====== ====== ====== ============================= ======================================== ================== 20 29 97.4 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CTTCAAAATTTGGTGGTGAACATATGTATGTAATTTTAATTTATGATATTTCTGTGGAAAACGGTGGGGCAAAGGTGTGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACACATGTCCAAAAGTCTGTATTTGAGGGTGAAATAACGCCAGCTCTTTTAGTGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGTAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGGCTGATGAAAAAACGTCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGGTCGACAGAAACGTGGGAAGCCTTTGGGGAGAATGGTTTTCGGTGAATATGCTTGTTTAAGTCGAGAAAATAAGATAGATCTCACCTGCTTTTTACGGTGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGATATTGGCGG # Right flank : CCACCCATCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTTATTCGAAAAACCCCACCCCCAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGAGTGGGGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGGAAAAATAGAAAACGGAAAAATGGAAATATTTAATCATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTGTTGTGGGACTTTTAATGCTTTTAGTGGGGTGTGGAAGTGAAGAAGCATCGAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGGGGCGTTGGGTTTAAAACTGTAGGATATACGGATGTGACATCTTATGAGACAGCGGTGCAACAGTC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:85.71%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 160216-158705 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXNQ010000041.1 Listeria seeligeri strain J2259 NODE_1_length_389540_cov_36.5545_ID_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 160215 29 100.0 35 ............................. GAGATTGACAAATACCGTTTCACTAAACTAGCACA 160151 29 100.0 34 ............................. CACATCTCCGGAAACGATGCTGAAACTGGGATAT 160088 29 100.0 35 ............................. CAACTCGGAAAAATTTCACTCGATAAGTATGGGGA 160024 29 100.0 35 ............................. ACTGCTAAGATGATGACTGCTCCTTTCACTTTTAA 159960 29 100.0 36 ............................. AGACATATTTATTAAGAATACAAAGAACGGAACACA 159895 29 100.0 35 ............................. CTTTTTGTTTTTAAGCGAGGTGTACCTCCCTTTGT 159831 29 100.0 34 ............................. ACAAGATCGTGACTGCTGAGCCTGTTTCTGCCAA 159768 29 100.0 35 ............................. CGACCCCAGCGGGATAGATATGAGTAGGGATATCG 159704 29 100.0 35 ............................. TTGTTTATGACCTCATCGTCATCCAATGGCTTATC 159640 29 100.0 37 ............................. TATTTATAACGCCAATTACCTTCTTCAGTCGCTACAG 159574 29 100.0 36 ............................. GTTTGAATGCTCTGATTAAATGCTGTTTGAGATTGC 159509 29 100.0 36 ............................. TCCATTCTGAAGTGAAAACAAATTATTTTGTCTTTT 159444 29 100.0 35 ............................. TTAGATCAAATAGATTCAATTCCTCTGATGGCACC 159380 29 100.0 34 ............................. GAATACGGGCGAAGCATTACCGTCGTTCGTTTGT 159317 29 100.0 35 ............................. AATTTAATTTAATAGGAACATTCATTACAGACGCC 159253 29 100.0 37 ............................. GTTTTAGTCAGCAATGCATTAATTACTTTCATACTCG 159187 29 100.0 36 ............................. CAGATACATCTACAACACGCAAAAGCGTCCCAACAG 159122 29 100.0 37 ............................. TAGTCATCATCTAGTTTTATTCCCATCACCACATATC 159056 29 100.0 35 ............................. AATCGAACGGATATTCCAATACTCGAATCGCCTTG 158992 29 100.0 36 ............................. CCACGTGGGGAAAGTGTACCCTGCCCTGTTACTAAT 158927 29 100.0 36 ............................. CCAGAAAAGTTGCATATAATCTTTCCGCTTAGGTTC 158862 29 100.0 35 ............................. AACGATGAAAAAGCACAAATAGAAGCATTAAAATC 158798 29 96.6 35 ....A........................ ATATACGGTATCCGGTATACTCGCCGTCCCATTCT 158734 29 86.2 0 ........C....C..A...........G | T [158707] ========== ====== ====== ====== ============================= ===================================== ================== 24 29 99.3 35 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : TAAAAAGTAACCGTTCCATCTTTTTTCTCTTTTGTATCCGCTTTGCTCGTTGTTGAATCATTCCCACAGCCCGCAATCAAAAGTAAAGCGCAAAACATCACCATCAATTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATAAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAAGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATAATTTTAGCACAGATAGTAAGCGTTTACAAATTTGCGCAATTTCTGTCGATGTATGGTAGCGTAAAAAGTACTGGAGACCGACAGATTTGCGGGATTCGTTGGGAGAGAATGAGAGTGCGGGGATTTTGGTTTTGAATAGTAATTTTAGGAAGGTGGAAAGCCGATTTTGAGATAGGTCGACAAAAATAGTCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : CCCTTCAATCATGCTAGTAAAGCTGCAGAAATAATTATTGCGAATTATAAATTCATCTAGCAACTAAAACATAGATAGTAGCATTATCATAAATTTCCCAGACAATAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATTAATCATATAGCAAATGTTAAGTAAAACACTAGTATTTTCAGTGTTTTTTTTTCGCTAGCATTCACTCTTTTTTTGTGTTAAATTAAACACAAGCAACAGATGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGAATTCGAATCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAACAGGAATTGAGAAATCTAGTCCAGAAAGATATGGAGATTTATTTGGTAGTAATAAGCGGAAAAATTACACTTTTTCGATATACTTGCCTAAACCTAAAAATAATAAAAATGAAATTTATCTTGAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 166801-166450 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXNQ010000041.1 Listeria seeligeri strain J2259 NODE_1_length_389540_cov_36.5545_ID_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 166800 29 100.0 37 ............................. TTTTTTACTCCGCTGGCATCAACAACAATATCCGCTC 166734 29 100.0 34 ............................. ATTGAGCGCCTTAATCAACTCTTCGGGTGTTACT 166671 29 100.0 34 ............................. AAGGTACATATTTGCTTTTAAAAAATGGATTATC 166608 29 100.0 36 ............................. TACTTTTAATTTTCGGTCCTGTAAGCCTACTTTTAT 166543 29 100.0 36 ............................. CCGTCAGATTGATTATAATAGATTGTCCGTTTTTCT 166478 29 96.6 0 ............A................ | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 99.4 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTCATTGCCTGCGCAACCCACTCCGTTATGGCTGGAAACGCTACTGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCTGATTCCATTGATCTACCAGAAGATAAACAATTTGATAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTATTTTAAGAAAATCTATAAGCAGAGACTCAAAATTGGGTCTCTGCTTTTTTGTGCGTTAACATCTGTCGACCGTTAGTAGCGTAGAAAACAAGGGGAATCGACAGAACATTGAATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTGAGTTATGAAATTAAAGTTTGGTGCTTTGATTTTAAGAGGTTTTTTGGAGGTCGACAAAAATAGGCGCTTGAGGTAAGATTGGAGTAAGAGGAAAAGTGAACGG # Right flank : GTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAACCATCCGAAAAACACCAAAGAGGAGGAAACACTCATGAAAAAAGTATTTATCCCGCTACTTTTTCTACTAATCCTACTAGCTAGTTGCTCCGCGCCTGATGAAAAATTAACAAAAGACACCAAGATTTTTAAAGAAGGCGTCATCAACGCGGATTATCAGGTTCCAAAAAACCTAGCAGAGCTTGAATCGAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAATTGGTAAAGGAAATAACACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCAAATCAGGTGCGACAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAATACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATATCTTGTTTTTAAGTGGAGGACATGACGGGGATAAAGTAAGTTCTATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //