Array 1 84109-85644 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGJO01000001.1 Escherichia coli strain WCHEC050613C1G1000M9 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 84109 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 84170 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 84231 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 84292 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 84353 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 84414 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 84475 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 84536 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 84597 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 84658 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 84719 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 84780 29 86.2 12 ...............C.A.C.....G... CAAACAGAGCCG G [84804] Deletion [84821] 84822 29 100.0 32 ............................. ATCCCCTGCGTCCTCTTTTGAATAATCGCGGC 84883 29 100.0 32 ............................. CGAGCGCCGTTGGCTACTGGCGTAGCCGTGGA 84944 29 100.0 32 ............................. CGCCGCGCGGCGGGTGAGTCCGTGTTTTATAC 85005 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 85066 29 96.6 32 .........A................... TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 85127 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 85188 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 85249 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 85310 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 85371 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 85432 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 85494 29 100.0 32 ............................. AATAGCAATAGTCCATAGATTTGCGAAAACAG 85555 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 85616 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.9 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 111194-112137 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGJO01000001.1 Escherichia coli strain WCHEC050613C1G1000M9 1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 111194 29 100.0 32 ............................. AGCAGCCAGTGCCGGTAGTGCCTGGTGATGGT 111255 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 111316 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 111377 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 111438 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 111499 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 111560 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 111621 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 111682 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 111743 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 111804 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 111865 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 111926 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 111987 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 112048 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 112109 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.4 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //